Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65608 * 119.99727 * 2 1 4 4 O 1.42097 * 106.39935 * 311.45556 * 3 2 1 5 5 O 1.42097 * 106.39702 * 178.54114 * 3 2 1 6 6 C 1.76194 * 107.22077 * 64.99894 * 3 2 1 7 7 C 1.38307 * 119.96324 * 89.99983 * 6 3 2 8 8 C 1.38256 * 120.13661 * 180.25714 * 7 6 3 9 9 C 1.38136 * 120.07216 * 359.48410 * 8 7 6 10 10 C 1.50707 * 120.03866 * 180.23657 * 9 8 7 11 11 C 1.38850 * 119.92899 * 0.53572 * 9 8 7 12 12 N 1.39942 * 120.06976 * 179.69991 * 11 9 8 13 13 C 1.34779 * 119.99817 * 145.29825 * 12 11 9 14 14 O 1.21582 * 120.00368 * 4.46662 * 13 12 11 15 15 N 1.34783 * 119.99688 * 184.47405 * 13 12 11 16 16 C 1.46495 * 120.00141 * 359.97438 * 15 13 12 17 17 C 1.46506 * 119.99693 * 179.97438 * 15 13 12 18 18 C 1.50705 * 109.46830 * 89.99913 * 17 15 13 19 19 H 1.08002 * 120.00053 * 359.97438 * 18 17 15 20 20 C 1.37878 * 119.99810 * 180.02562 * 18 17 15 21 21 N 1.31517 * 119.99600 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00025 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47215 * 90.00166 * 22 20 18 24 24 H 1.48506 * 109.47021 * 210.00368 * 22 20 18 25 25 H 1.48500 * 109.47455 * 329.99897 * 22 20 18 26 26 C 1.38086 * 119.96739 * 270.02140 * 6 3 2 27 27 H 1.09003 * 109.47370 * 60.00008 * 1 2 3 28 28 H 1.08991 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46921 * 300.00164 * 1 2 3 30 30 H 0.96995 * 120.00117 * 179.97438 * 2 1 3 31 31 H 1.07996 * 119.93064 * 359.97273 * 7 6 3 32 32 H 1.08002 * 119.96420 * 179.74565 * 8 7 6 33 33 H 1.08999 * 109.46818 * 270.30209 * 10 9 8 34 34 H 1.09005 * 109.46744 * 30.29594 * 10 9 8 35 35 H 1.08992 * 109.46971 * 150.30212 * 10 9 8 36 36 H 0.96998 * 120.00359 * 325.29226 * 12 11 9 37 37 H 1.08999 * 109.47127 * 90.00483 * 16 15 13 38 38 H 1.08998 * 109.47215 * 210.00175 * 16 15 13 39 39 H 1.08995 * 109.47180 * 330.00246 * 16 15 13 40 40 H 1.08990 * 109.46976 * 209.99661 * 17 15 13 41 41 H 1.09002 * 109.47293 * 330.00336 * 17 15 13 42 42 H 0.97005 * 119.99604 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.03456 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6737 1.1003 0.0347 6 6 1.9378 2.2416 1.5253 7 6 2.7390 2.0152 2.6297 8 6 2.4604 2.6427 3.8297 9 6 1.3867 3.5064 3.9263 10 6 1.0869 4.1941 5.2333 11 6 0.5801 3.7355 2.8195 12 7 -0.5121 4.6050 2.9158 13 6 -0.8595 5.3698 1.8618 14 8 -0.2761 5.2461 0.8023 15 7 -1.8536 6.2719 1.9824 16 6 -2.5569 6.4207 3.2588 17 6 -2.2309 7.1037 0.8368 18 6 -3.3021 6.4048 0.0398 19 1 -3.6653 5.4377 0.3548 20 6 -3.8178 6.9997 -1.0921 21 7 -4.7531 6.3900 -1.7873 22 14 -3.1892 8.6720 -1.6373 23 1 -2.0380 8.4921 -2.5579 24 1 -4.2743 9.4041 -2.3387 25 1 -2.7557 9.4495 -0.4487 26 6 0.8595 3.0994 1.6169 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 3.5813 1.3433 2.5557 32 1 3.0855 2.4607 4.6914 33 1 0.4130 3.5736 5.8241 34 1 2.0150 4.3486 5.7838 35 1 0.6159 5.1573 5.0374 36 1 -1.0192 4.6572 3.7410 37 1 -2.0501 7.1693 3.8677 38 1 -3.5833 6.7374 3.0734 39 1 -2.5606 5.4662 3.7850 40 1 -2.6095 8.0618 1.1926 41 1 -1.3581 7.2696 0.2052 42 1 -5.1162 6.8087 -2.5835 43 1 0.2343 3.2758 0.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085588674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = -56.129515 kcal Electronic energy + Delta-G solvation = -28228.154087 eV Core-core repulsion = 24208.418641 eV Total energy + Delta-G solvation = -4019.735446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61354 -38.77497 -37.17568 -35.78150 -35.24647 -35.07018 -34.70219 -32.89365 -32.48353 -29.94634 -28.35805 -27.33921 -26.07662 -26.02075 -23.53140 -22.27537 -21.76607 -19.68027 -19.56576 -18.50340 -17.59207 -17.34487 -16.99213 -16.31733 -16.21941 -15.63486 -15.37727 -14.95605 -14.76847 -14.42966 -14.11165 -13.91242 -13.77414 -13.71155 -13.36422 -12.91197 -12.86064 -12.73361 -12.43396 -12.36093 -12.27359 -12.12331 -12.02055 -11.94982 -11.65346 -11.63333 -11.47603 -11.00886 -10.88477 -10.53691 -10.37919 -10.14726 -9.71596 -9.62026 -9.42761 -9.13015 -8.58738 -8.20479 -7.74120 -6.09096 -4.08223 0.38544 0.76487 1.27851 2.89976 3.00314 3.30705 3.34610 3.36120 3.39772 3.70848 3.84275 4.22938 4.39899 4.41928 4.61834 4.67896 4.93354 4.97824 5.12806 5.23679 5.27396 5.30954 5.37382 5.38323 5.50050 5.62699 5.66723 5.69521 5.73244 5.74889 5.95677 6.02541 6.13477 6.24466 6.41477 6.50089 6.79972 6.82952 6.99777 7.15562 7.36451 7.59340 8.32305 8.45598 8.92471 9.02737 9.50860 11.04238 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.003883 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.738668 B = 7209.623339 C = 8817.630644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.694 3.306 4 O -0.941 6.941 5 O -0.965 6.965 6 C -0.664 4.664 7 C -0.043 4.043 8 C -0.124 4.124 9 C -0.068 4.068 10 C -0.121 4.121 11 C 0.158 3.842 12 N -0.693 5.693 13 C 0.696 3.304 14 O -0.560 6.560 15 N -0.605 5.605 16 C 0.083 3.917 17 C 0.229 3.771 18 C -0.531 4.531 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.019 4.019 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.416 0.584 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.040 0.960 42 H 0.265 0.735 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.055 -11.361 15.982 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.880 5.880 3 S 2.783 3.217 4 O -0.931 6.931 5 O -0.955 6.955 6 C -0.752 4.752 7 C -0.064 4.064 8 C -0.144 4.144 9 C -0.072 4.072 10 C -0.177 4.177 11 C 0.061 3.939 12 N -0.343 5.343 13 C 0.398 3.602 14 O -0.435 6.435 15 N -0.340 5.340 16 C -0.061 4.061 17 C 0.109 3.891 18 C -0.570 4.570 19 H 0.093 0.907 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.040 4.040 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.241 0.759 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.647 -10.815 14.330 21.400 hybrid contribution -0.311 0.609 0.860 1.099 sum 11.336 -10.206 15.190 21.527 Atomic orbital electron populations 1.21531 0.78122 1.04058 1.02740 1.55335 1.16338 1.24204 1.92172 1.01945 0.72846 0.72755 0.74161 1.93669 1.78184 1.67797 1.53434 1.93567 1.30916 1.83655 1.87373 1.30764 1.07165 1.15722 1.21543 1.20752 0.96952 0.97421 0.91252 1.20873 0.97490 0.97988 0.98014 1.19985 0.93898 0.97779 0.95542 1.20840 1.02971 1.00313 0.93590 1.17397 0.89449 0.92640 0.94429 1.42923 1.31820 1.42373 1.17230 1.15936 0.81419 0.79611 0.83271 1.90949 1.55952 1.70397 1.26213 1.47142 1.34172 1.39117 1.13575 1.21632 0.99038 0.99970 0.85474 1.19662 0.96668 0.89424 0.83362 1.21313 1.19675 1.06440 1.09555 0.90745 1.24833 0.94566 0.97655 0.95812 1.69893 1.27618 1.38597 1.17323 0.86860 0.79001 0.84292 0.79572 1.19735 1.21069 1.19122 1.21297 0.94717 0.89404 0.98619 0.90813 0.89971 0.92078 0.75057 0.84501 0.84989 0.90557 0.90690 0.91142 0.75859 0.93461 0.89867 0.92960 0.94919 0.94221 0.92519 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.14 59.85 0.67 1.45 16 2 N -1.12 -11.11 6.19 -16.63 -0.10 -11.21 16 3 S 2.69 37.88 5.74 -107.50 -0.62 37.26 16 4 O -0.94 -17.71 17.00 -57.17 -0.97 -18.68 16 5 O -0.96 -14.63 17.28 -57.17 -0.99 -15.62 16 6 C -0.66 -9.42 5.94 -39.61 -0.24 -9.65 16 7 C -0.04 -0.51 9.52 -39.55 -0.38 -0.89 16 8 C -0.12 -1.30 9.70 -39.61 -0.38 -1.68 16 9 C -0.07 -0.79 5.90 -104.43 -0.62 -1.40 16 10 C -0.12 -0.96 9.47 36.01 0.34 -0.61 16 11 C 0.16 2.37 6.29 -83.69 -0.53 1.84 16 12 N -0.69 -10.54 4.63 -14.22 -0.07 -10.60 16 13 C 0.70 14.23 8.12 -86.91 -0.71 13.52 16 14 O -0.56 -13.98 13.34 5.29 0.07 -13.91 16 15 N -0.61 -12.12 2.86 -188.74 -0.54 -12.66 16 16 C 0.08 1.17 10.24 59.84 0.61 1.78 16 17 C 0.23 5.54 4.23 -5.19 -0.02 5.51 16 18 C -0.53 -15.08 9.94 -34.44 -0.34 -15.43 16 19 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 20 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 21 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 22 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 26 C -0.02 -0.31 8.17 -39.40 -0.32 -0.63 16 27 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.42 2.91 8.96 -34.48 -0.31 2.60 16 31 H 0.14 1.30 7.61 -52.49 -0.40 0.90 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.07 0.58 7.17 -51.93 -0.37 0.21 16 36 H 0.40 4.65 5.55 -40.82 -0.23 4.42 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 40 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 41 H 0.04 1.04 6.85 -51.93 -0.36 0.68 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.16 3.28 5.75 -52.48 -0.30 2.98 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -39.52 369.91 -9.17 -48.69 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.63 Total: 5.13 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.01 Total: -4.14 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.07 Total: -61.21 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.89 Total: -48.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 16 Polarization: 37.88 SS G_CDS: -0.62 Total: 37.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.52 -9.17 -48.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085588674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.440 kcal (2) G-P(sol) polarization free energy of solvation -39.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds