Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38310 * 119.96669 * 2 1 4 4 C 1.38249 * 120.14157 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.96309 * 180.02562 * 4 3 2 6 6 N 1.65605 * 107.22033 * 269.97876 * 5 4 3 7 7 O 1.42091 * 106.40409 * 23.51887 * 5 4 3 8 8 O 1.42098 * 106.40230 * 156.44354 * 5 4 3 9 9 C 1.38142 * 120.07292 * 359.97438 * 4 3 2 10 10 C 1.38844 * 119.92505 * 0.02562 * 9 4 3 11 11 N 1.39948 * 120.06446 * 179.97438 * 10 9 4 12 12 C 1.34771 * 120.00316 * 335.17609 * 11 10 9 13 13 O 1.21586 * 119.99847 * 354.34476 * 12 11 10 14 14 N 1.34776 * 120.00114 * 174.06223 * 12 11 10 15 15 C 1.46501 * 120.00012 * 0.28243 * 14 12 11 16 16 C 1.46503 * 120.00020 * 180.27201 * 14 12 11 17 17 C 1.50703 * 109.46660 * 90.00843 * 16 14 12 18 18 H 1.08002 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.37871 * 119.99845 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47091 * 59.99893 * 21 19 17 23 23 H 1.48504 * 109.47404 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47245 * 300.00049 * 21 19 17 25 25 C 1.38093 * 119.96688 * 180.28140 * 2 1 3 26 26 C 1.50702 * 120.03467 * 359.96828 * 25 2 1 27 27 H 1.08999 * 109.47400 * 89.99982 * 1 2 3 28 28 H 1.08998 * 109.47012 * 209.99705 * 1 2 3 29 29 H 1.09003 * 109.47356 * 329.99700 * 1 2 3 30 30 H 1.07997 * 119.92324 * 0.04473 * 3 2 1 31 31 H 0.97002 * 119.99299 * 0.02562 * 6 5 4 32 32 H 0.96997 * 120.00011 * 180.02562 * 6 5 4 33 33 H 1.07996 * 120.03684 * 180.02562 * 9 4 3 34 34 H 0.97000 * 119.99372 * 155.17875 * 11 10 9 35 35 H 1.09000 * 109.47463 * 89.99239 * 15 14 12 36 36 H 1.08997 * 109.47222 * 209.99438 * 15 14 12 37 37 H 1.09000 * 109.46730 * 329.99654 * 15 14 12 38 38 H 1.08999 * 109.46905 * 210.00245 * 16 14 12 39 39 H 1.08996 * 109.47436 * 330.00956 * 16 14 12 40 40 H 0.96996 * 120.00788 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.47343 * 270.28410 * 26 25 2 42 42 H 1.09001 * 109.46816 * 30.28300 * 26 25 2 43 43 H 1.09005 * 109.46508 * 150.27985 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2024 -0.0005 5 16 4.4556 2.7316 0.0002 6 7 4.6991 3.1579 -1.5815 7 8 3.5705 3.7004 0.5451 8 8 5.7396 2.4587 0.5443 9 6 4.2761 0.0091 -0.0005 10 6 3.5856 -1.1954 -0.0005 11 7 4.2876 -2.4061 -0.0011 12 6 5.5418 -2.4576 -0.4916 13 8 6.0259 -1.4791 -1.0267 14 7 6.2615 -3.5920 -0.3838 15 6 5.6782 -4.7711 0.2610 16 6 7.6270 -3.6461 -0.9117 17 6 8.5976 -3.2269 0.1623 18 1 8.2336 -2.9477 1.1400 19 6 9.9502 -3.1999 -0.1034 20 7 10.3935 -3.5394 -1.2942 21 14 11.1533 -2.6796 1.2275 22 1 11.0340 -3.5974 2.3888 23 1 12.5376 -2.7357 0.6929 24 1 10.8446 -1.2926 1.6590 25 6 2.1967 -1.1963 -0.0059 26 6 1.4432 -2.5014 -0.0116 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6560 2.1324 0.0007 31 1 4.3714 2.5866 -2.2936 32 1 5.1693 3.9787 -1.7957 33 1 5.3561 0.0131 -0.0005 34 1 3.8714 -3.2081 0.3516 35 1 5.1701 -5.3802 -0.4867 36 1 6.4685 -5.3567 0.7307 37 1 4.9618 -4.4537 1.0188 38 1 7.8538 -4.6639 -1.2291 39 1 7.7143 -2.9718 -1.7636 40 1 11.3451 -3.5207 -1.4810 41 1 1.2576 -2.8183 1.0147 42 1 0.4928 -2.3699 -0.5287 43 1 2.0344 -3.2599 -0.5249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085600548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -69.175136 kcal Electronic energy + Delta-G solvation = -28123.560237 eV Core-core repulsion = 24103.259091 eV Total energy + Delta-G solvation = -4020.301147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71015 -38.95147 -37.02879 -35.72562 -35.30636 -34.76574 -33.67235 -33.13830 -32.62848 -30.77986 -28.08268 -27.53006 -26.78131 -25.89474 -23.44759 -22.01338 -21.64973 -19.58516 -19.30577 -18.46489 -17.47256 -17.28042 -16.62754 -16.44968 -16.10900 -15.98302 -15.19018 -15.05185 -14.83481 -14.65323 -14.43168 -13.99303 -13.41444 -13.22143 -13.13829 -12.96210 -12.82060 -12.47034 -12.22550 -12.21810 -12.09575 -12.01038 -11.98000 -11.94920 -11.86467 -11.54297 -11.21348 -10.94551 -10.84855 -10.57807 -10.45601 -10.37276 -10.14529 -9.71049 -9.36238 -8.95561 -8.43583 -8.10369 -7.69213 -6.05385 -4.10340 0.42821 0.76731 1.27274 2.96855 3.06375 3.32608 3.34327 3.38735 3.44504 3.70469 3.86961 4.28481 4.44226 4.49251 4.66407 4.72728 4.84762 5.06856 5.14211 5.27739 5.29262 5.36606 5.37513 5.42174 5.53063 5.61068 5.70467 5.72776 5.79186 5.99377 5.99639 6.05964 6.21953 6.31740 6.41461 6.67844 7.00885 7.02579 7.26002 7.39978 7.55643 7.91179 8.19446 8.41712 8.88430 9.07554 9.55301 11.02556 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.003941 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.463921 B = 7103.825366 C = 9111.332284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.050 4.050 4 C -0.654 4.654 5 S 2.701 3.299 6 N -1.249 6.249 7 O -0.971 6.971 8 O -0.955 6.955 9 C -0.032 4.032 10 C 0.169 3.831 11 N -0.691 5.691 12 C 0.695 3.305 13 O -0.563 6.563 14 N -0.608 5.608 15 C 0.081 3.919 16 C 0.259 3.741 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.074 4.074 26 C -0.122 4.122 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.417 0.583 32 H 0.418 0.582 33 H 0.173 0.827 34 H 0.404 0.596 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.264 0.736 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.642 4.195 0.157 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.071 4.071 4 C -0.742 4.742 5 S 2.790 3.210 6 N -0.923 5.923 7 O -0.961 6.961 8 O -0.944 6.944 9 C -0.054 4.054 10 C 0.070 3.930 11 N -0.339 5.339 12 C 0.397 3.603 13 O -0.440 6.440 14 N -0.343 5.343 15 C -0.063 4.063 16 C 0.140 3.860 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.078 4.078 26 C -0.179 4.179 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.244 0.756 32 H 0.248 0.752 33 H 0.190 0.810 34 H 0.241 0.759 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.711 5.188 0.594 21.359 hybrid contribution 0.315 -0.809 0.208 0.893 sum -20.397 4.378 0.802 20.877 Atomic orbital electron populations 1.20808 0.90471 1.03146 1.02541 1.19553 0.96092 0.91784 1.01603 1.20656 0.91690 0.98538 0.96186 1.30379 1.05658 1.18811 1.19399 1.01509 0.73869 0.73185 0.72396 1.52998 1.76072 1.36571 1.26670 1.93573 1.66949 1.58892 1.76666 1.93657 1.39747 1.84628 1.76352 1.21441 1.02776 0.89124 0.92072 1.17413 0.89889 0.85939 0.99716 1.43029 1.15573 1.10041 1.65273 1.15966 0.79795 0.84746 0.79841 1.90859 1.70078 1.34411 1.48622 1.47545 1.16902 1.09698 1.60126 1.21635 0.99142 0.89077 0.96487 1.19300 0.73398 0.98022 0.95247 1.21395 0.91235 1.45861 0.98384 0.92434 1.24904 0.98221 0.95026 0.95731 1.69911 1.14797 1.48099 1.20577 0.86560 0.79778 0.79539 0.81602 1.20294 1.21150 1.19908 1.19707 0.91510 0.95968 1.00609 1.20865 1.00420 0.93823 1.02743 0.90953 0.91149 0.91134 0.84343 0.75553 0.75173 0.80970 0.75860 0.93517 0.89968 0.93137 0.94655 0.93530 0.92608 0.90511 0.90396 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.18 36.00 0.33 -0.48 16 2 C -0.09 -0.96 5.88 -104.65 -0.62 -1.58 16 3 C -0.05 -0.60 9.17 -39.55 -0.36 -0.96 16 4 C -0.65 -9.32 5.94 -39.61 -0.24 -9.55 16 5 S 2.70 37.61 6.28 -107.50 -0.68 36.93 16 6 N -1.25 -12.49 9.55 60.35 0.58 -11.91 16 7 O -0.97 -14.72 17.28 -57.17 -0.99 -15.71 16 8 O -0.95 -17.82 17.28 -57.17 -0.99 -18.81 16 9 C -0.03 -0.56 8.19 -39.39 -0.32 -0.88 16 10 C 0.17 2.58 6.41 -83.69 -0.54 2.05 16 11 N -0.69 -10.75 4.80 -14.23 -0.07 -10.82 16 12 C 0.69 14.35 8.08 -86.92 -0.70 13.65 16 13 O -0.56 -13.86 13.09 5.29 0.07 -13.79 16 14 N -0.61 -12.50 2.86 -188.74 -0.54 -13.04 16 15 C 0.08 1.19 10.16 59.85 0.61 1.79 16 16 C 0.26 6.64 5.16 -5.19 -0.03 6.61 16 17 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 20 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.07 -0.87 5.90 -104.43 -0.62 -1.49 16 26 C -0.12 -0.98 8.62 36.01 0.31 -0.67 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.42 6.72 -51.93 -0.35 0.07 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.14 1.37 7.61 -52.49 -0.40 0.97 16 31 H 0.42 3.40 8.92 -34.47 -0.31 3.09 16 32 H 0.42 3.32 8.96 -34.47 -0.31 3.01 16 33 H 0.17 3.59 5.35 -52.49 -0.28 3.30 16 34 H 0.40 4.82 5.23 -40.82 -0.21 4.61 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.05 0.59 6.45 -51.93 -0.33 0.25 16 38 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.50 6.72 -51.93 -0.35 0.15 16 43 H 0.07 0.56 6.99 -51.93 -0.36 0.19 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -38.66 367.94 -9.30 -47.96 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.36 Total: 7.28 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.59 Total: -5.07 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.71 Total: -61.46 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -1.91 Total: -48.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.68 Total: 36.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.66 -9.30 -47.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.213 kcal (2) G-P(sol) polarization free energy of solvation -38.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds