Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34790 * 117.00274 * 2 1 4 4 O 1.21545 * 120.00097 * 359.97438 * 3 2 1 5 5 C 1.47062 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.40315 * 120.25101 * 89.97879 * 5 3 2 7 7 O 1.35639 * 120.11906 * 359.97438 * 6 5 3 8 8 C 1.38522 * 119.76033 * 180.02562 * 6 5 3 9 9 C 1.38291 * 120.28375 * 359.97438 * 8 6 5 10 10 C 1.38188 * 120.51246 * 359.74518 * 9 8 6 11 11 C 1.38720 * 120.22916 * 0.51143 * 10 9 8 12 12 N 1.39168 * 120.14633 * 179.76886 * 11 10 9 13 13 C 1.34776 * 120.00096 * 28.82955 * 12 11 10 14 14 O 1.21554 * 119.99911 * 355.56427 * 13 12 11 15 15 C 1.47843 * 120.00232 * 175.83413 * 13 12 11 16 16 C 1.39937 * 120.02799 * 359.45457 * 15 13 12 17 17 C 1.38320 * 120.35605 * 179.69559 * 16 15 13 18 18 C 1.37760 * 120.41481 * 0.60330 * 17 16 15 19 19 C 1.40746 * 120.04035 * 359.67396 * 18 17 16 20 20 C 1.41440 * 120.17433 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99940 * 332.37560 * 20 19 18 22 22 C 1.39939 * 120.00029 * 152.36942 * 20 19 18 23 23 N 1.30828 * 119.99833 * 347.63327 * 22 20 19 24 24 Si 1.86801 * 120.00033 * 167.63317 * 22 20 19 25 25 H 1.48500 * 109.47136 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46925 * 120.00188 * 24 22 20 27 27 H 1.48503 * 109.46970 * 240.00125 * 24 22 20 28 28 C 1.39015 * 120.02818 * 179.72934 * 15 13 12 29 29 H 1.09000 * 109.46963 * 59.99660 * 1 2 3 30 30 H 1.08999 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47068 * 300.00018 * 1 2 3 32 32 H 0.96696 * 114.00145 * 90.00138 * 7 6 5 33 33 H 1.08003 * 119.85821 * 179.97438 * 8 6 5 34 34 H 1.08000 * 119.74595 * 180.02562 * 9 8 6 35 35 H 1.08003 * 119.88816 * 180.25765 * 10 9 8 36 36 H 0.97004 * 120.00265 * 208.83405 * 12 11 10 37 37 H 1.08006 * 119.81897 * 359.96990 * 16 15 13 38 38 H 1.08001 * 119.79361 * 180.30267 * 17 16 15 39 39 H 1.08002 * 119.97706 * 179.69823 * 18 17 16 40 40 H 0.97003 * 120.00069 * 179.97438 * 23 22 20 41 41 H 1.08004 * 120.20655 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5326 1.2778 -0.0006 6 6 4.2381 1.3146 -1.2129 7 8 3.5680 1.2788 -2.3917 8 6 5.6214 1.3865 -1.2016 9 6 6.3080 1.4226 -0.0017 10 6 5.6246 1.3928 1.1989 11 6 4.2396 1.3155 1.2125 12 7 3.5533 1.2808 2.4227 13 6 4.0773 1.8770 3.5119 14 8 5.1849 2.3749 3.4585 15 6 3.3075 1.9202 4.7733 16 6 2.0300 1.3523 4.8339 17 6 1.3063 1.3834 6.0123 18 6 1.8293 1.9843 7.1362 19 6 3.1102 2.5659 7.0929 20 6 3.6501 3.1831 8.2453 21 1 2.9921 3.6108 8.9873 22 6 5.0369 3.2395 8.4242 23 7 5.8240 2.5213 7.6652 24 14 5.7640 4.3401 9.7469 25 1 4.6692 5.0424 10.4634 26 1 6.5349 3.5134 10.7100 27 1 6.6659 5.3389 9.1189 28 6 3.8498 2.5301 5.8987 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.3272 2.1506 -2.7338 33 1 6.1660 1.4144 -2.1338 34 1 7.3865 1.4791 -0.0030 35 1 6.1708 1.4257 2.1301 36 1 2.6978 0.8275 2.4823 37 1 1.6086 0.8834 3.9569 38 1 0.3232 0.9380 6.0501 39 1 1.2561 2.0087 8.0513 40 1 6.7853 2.5607 7.7889 41 1 4.8338 2.9733 5.8556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188678036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -107.610279 kcal Electronic energy + Delta-G solvation = -28799.631988 eV Core-core repulsion = 24609.927466 eV Total energy + Delta-G solvation = -4189.704522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14184 -39.94012 -39.04987 -37.46613 -36.63665 -36.46519 -34.55586 -33.76544 -31.21848 -30.53290 -29.60262 -28.93036 -27.81885 -25.46716 -24.27610 -23.77775 -22.02460 -21.19652 -20.96791 -19.92220 -18.70871 -18.24804 -17.84045 -17.14293 -17.04375 -16.33613 -16.01844 -15.50942 -15.34446 -15.11454 -14.94061 -14.73546 -14.29725 -14.08806 -13.74576 -13.33770 -13.23097 -12.89557 -12.72543 -12.66286 -12.55979 -12.24540 -11.93383 -11.74889 -11.28585 -11.25563 -11.17638 -10.94611 -10.85131 -10.61799 -10.57949 -10.40541 -10.09544 -9.82035 -9.35415 -9.27117 -8.91756 -8.18983 -7.76612 -7.61536 -6.85295 -4.52656 0.81491 1.10933 1.91576 2.00682 2.58718 2.70594 3.03764 3.05861 3.08803 3.09853 3.37256 3.67888 3.86458 3.99314 4.53842 4.56566 4.84571 4.94302 4.95613 5.04581 5.18334 5.30296 5.33191 5.44397 5.46858 5.61693 5.90280 5.97923 6.08282 6.11847 6.19164 6.27785 6.41175 6.58242 6.80006 6.85806 6.87823 7.11033 7.23721 7.33004 7.44180 7.52376 7.56743 7.70526 7.85741 8.04533 8.38791 8.48992 8.70445 8.72620 10.08930 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.003116 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.119355 B = 8982.905512 C =10510.859396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.524 3.476 4 O -0.491 6.491 5 C -0.182 4.182 6 C 0.165 3.835 7 O -0.494 6.494 8 C -0.173 4.173 9 C -0.059 4.059 10 C -0.144 4.144 11 C 0.223 3.777 12 N -0.675 5.675 13 C 0.570 3.430 14 O -0.515 6.515 15 C -0.134 4.134 16 C -0.214 4.214 17 C -0.096 4.096 18 C -0.203 4.203 19 C 0.098 3.902 20 C -0.457 4.457 21 H 0.082 0.918 22 C 0.071 3.929 23 N -0.790 5.790 24 Si 0.914 3.086 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.271 1.271 28 C -0.080 4.080 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.411 0.589 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.284 0.716 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -4.098 -14.978 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.266 6.266 3 C 0.366 3.634 4 O -0.377 6.377 5 C -0.187 4.187 6 C 0.119 3.881 7 O -0.305 6.305 8 C -0.192 4.192 9 C -0.077 4.077 10 C -0.164 4.164 11 C 0.125 3.875 12 N -0.318 5.318 13 C 0.363 3.637 14 O -0.391 6.391 15 C -0.137 4.137 16 C -0.234 4.234 17 C -0.114 4.114 18 C -0.223 4.223 19 C 0.095 3.905 20 C -0.486 4.486 21 H 0.101 0.899 22 C -0.147 4.147 23 N -0.414 5.414 24 Si 0.738 3.262 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.100 4.100 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.253 0.747 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.182 0.818 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.897 -4.080 -14.877 15.543 hybrid contribution -0.483 0.633 0.405 0.893 sum -2.379 -3.447 -14.472 15.066 Atomic orbital electron populations 1.23353 0.76040 1.03985 1.02813 1.86711 1.23554 1.32574 1.83759 1.20898 0.88669 0.81784 0.72048 1.90894 1.66563 1.36012 1.44242 1.19169 0.89342 1.16423 0.93782 1.17949 0.89757 0.97414 0.82938 1.84719 1.76412 1.34442 1.34927 1.21236 0.92506 1.06107 0.99379 1.21145 1.00487 0.95044 0.91069 1.21682 0.91790 1.02064 1.00840 1.17538 0.91477 0.94881 0.83650 1.43620 1.24606 1.55609 1.07996 1.19076 0.85823 0.75608 0.83188 1.90654 1.19495 1.45190 1.83737 1.19303 0.95427 1.06745 0.92228 1.20325 0.95500 1.09949 0.97668 1.20435 0.97913 0.99817 0.93272 1.21186 0.98877 1.04980 0.97302 1.17615 0.90859 0.89635 0.92372 1.19640 0.91622 1.32479 1.04908 0.89947 1.25967 0.97365 0.94335 0.97060 1.69753 1.05981 1.30987 1.34727 0.86166 0.79499 0.80215 0.80337 1.18370 1.19857 1.19560 1.21710 1.00813 0.97834 0.89649 0.91766 0.87796 0.91487 0.74723 0.84599 0.84514 0.81833 0.75178 0.89510 0.88611 0.88300 0.90452 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.70 10.58 -40.74 -0.43 -5.13 16 3 C 0.52 7.99 5.90 34.31 0.20 8.20 16 4 O -0.49 -8.43 16.90 -19.30 -0.33 -8.76 16 5 C -0.18 -2.74 5.78 -104.71 -0.60 -3.34 16 6 C 0.16 2.10 6.72 -38.70 -0.26 1.84 16 7 O -0.49 -5.38 12.95 -18.62 -0.24 -5.62 16 8 C -0.17 -1.91 9.97 -39.46 -0.39 -2.30 16 9 C -0.06 -0.69 10.02 -39.58 -0.40 -1.09 16 10 C -0.14 -2.20 8.73 -39.42 -0.34 -2.55 16 11 C 0.22 3.65 6.41 -83.52 -0.54 3.11 16 12 N -0.67 -11.95 5.05 -10.54 -0.05 -12.00 16 13 C 0.57 12.10 7.64 -12.33 -0.09 12.00 16 14 O -0.51 -11.84 13.39 5.32 0.07 -11.77 16 15 C -0.13 -3.07 5.87 -105.04 -0.62 -3.68 16 16 C -0.21 -4.43 9.54 -38.92 -0.37 -4.80 16 17 C -0.10 -1.99 10.01 -39.73 -0.40 -2.39 16 18 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 19 C 0.10 2.50 5.55 -106.87 -0.59 1.90 16 20 C -0.46 -11.63 9.06 -37.73 -0.34 -11.97 16 21 H 0.08 2.00 7.88 -52.49 -0.41 1.58 16 22 C 0.07 1.74 5.23 -17.34 -0.09 1.65 16 23 N -0.79 -20.13 10.85 55.55 0.60 -19.53 16 24 Si 0.91 18.26 29.58 -169.99 -5.03 13.23 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.08 -2.05 8.21 -38.44 -0.32 -2.37 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.40 2.65 9.06 45.56 0.41 3.06 16 33 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 2.81 5.73 -52.48 -0.30 2.51 16 36 H 0.41 6.65 6.04 -40.82 -0.25 6.40 16 37 H 0.09 1.52 6.39 -52.48 -0.34 1.19 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 41 H 0.14 3.80 5.77 -52.48 -0.30 3.50 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -30.90 361.39 -7.70 -38.60 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -3.28 Total: 14.99 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -4.46 Total: -9.46 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.55 Total: -31.53 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.93 Total: -31.28 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.90 -7.70 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188678036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.007 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds