Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34790 * 117.00274 * 2 1 4 4 O 1.21545 * 120.00097 * 359.97438 * 3 2 1 5 5 C 1.47062 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.40315 * 120.25101 * 89.97879 * 5 3 2 7 7 O 1.35639 * 120.11906 * 359.97438 * 6 5 3 8 8 C 1.38522 * 119.76033 * 180.02562 * 6 5 3 9 9 C 1.38291 * 120.28375 * 359.97438 * 8 6 5 10 10 C 1.38188 * 120.51246 * 359.74518 * 9 8 6 11 11 C 1.38720 * 120.22916 * 0.51143 * 10 9 8 12 12 N 1.39168 * 120.14633 * 179.76886 * 11 10 9 13 13 C 1.34776 * 120.00096 * 28.82955 * 12 11 10 14 14 O 1.21554 * 119.99911 * 355.56427 * 13 12 11 15 15 C 1.47843 * 120.00232 * 175.83413 * 13 12 11 16 16 C 1.39937 * 120.02799 * 359.45457 * 15 13 12 17 17 C 1.38320 * 120.35605 * 179.69559 * 16 15 13 18 18 C 1.37760 * 120.41481 * 0.60330 * 17 16 15 19 19 C 1.40746 * 120.04035 * 359.67396 * 18 17 16 20 20 C 1.41440 * 120.17433 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99940 * 332.37560 * 20 19 18 22 22 C 1.39939 * 120.00029 * 152.36942 * 20 19 18 23 23 N 1.30828 * 119.99833 * 347.63327 * 22 20 19 24 24 Si 1.86801 * 120.00033 * 167.63317 * 22 20 19 25 25 H 1.48500 * 109.47136 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46925 * 120.00188 * 24 22 20 27 27 H 1.48503 * 109.46970 * 240.00125 * 24 22 20 28 28 C 1.39015 * 120.02818 * 179.72934 * 15 13 12 29 29 H 1.09000 * 109.46963 * 59.99660 * 1 2 3 30 30 H 1.08999 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47068 * 300.00018 * 1 2 3 32 32 H 0.96696 * 114.00145 * 90.00138 * 7 6 5 33 33 H 1.08003 * 119.85821 * 179.97438 * 8 6 5 34 34 H 1.08000 * 119.74595 * 180.02562 * 9 8 6 35 35 H 1.08003 * 119.88816 * 180.25765 * 10 9 8 36 36 H 0.97004 * 120.00265 * 208.83405 * 12 11 10 37 37 H 1.08006 * 119.81897 * 359.96990 * 16 15 13 38 38 H 1.08001 * 119.79361 * 180.30267 * 17 16 15 39 39 H 1.08002 * 119.97706 * 179.69823 * 18 17 16 40 40 H 0.97003 * 120.00069 * 179.97438 * 23 22 20 41 41 H 1.08004 * 120.20655 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5326 1.2778 -0.0006 6 6 4.2381 1.3146 -1.2129 7 8 3.5680 1.2788 -2.3917 8 6 5.6214 1.3865 -1.2016 9 6 6.3080 1.4226 -0.0017 10 6 5.6246 1.3928 1.1989 11 6 4.2396 1.3155 1.2125 12 7 3.5533 1.2808 2.4227 13 6 4.0773 1.8770 3.5119 14 8 5.1849 2.3749 3.4585 15 6 3.3075 1.9202 4.7733 16 6 2.0300 1.3523 4.8339 17 6 1.3063 1.3834 6.0123 18 6 1.8293 1.9843 7.1362 19 6 3.1102 2.5659 7.0929 20 6 3.6501 3.1831 8.2453 21 1 2.9921 3.6108 8.9873 22 6 5.0369 3.2395 8.4242 23 7 5.8240 2.5213 7.6652 24 14 5.7640 4.3401 9.7469 25 1 4.6692 5.0424 10.4634 26 1 6.5349 3.5134 10.7100 27 1 6.6659 5.3389 9.1189 28 6 3.8498 2.5301 5.8987 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.3272 2.1506 -2.7338 33 1 6.1660 1.4144 -2.1338 34 1 7.3865 1.4791 -0.0030 35 1 6.1708 1.4257 2.1301 36 1 2.6978 0.8275 2.4823 37 1 1.6086 0.8834 3.9569 38 1 0.3232 0.9380 6.0501 39 1 1.2561 2.0087 8.0513 40 1 6.7853 2.5607 7.7889 41 1 4.8338 2.9733 5.8556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188678036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -127.304031 kcal Electronic energy + Delta-G solvation = -28800.485973 eV Core-core repulsion = 24609.927466 eV Total energy + Delta-G solvation = -4190.558507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34790 -41.29227 -40.18361 -39.06972 -37.84551 -37.58455 -35.97396 -35.49153 -32.55887 -31.95355 -31.38302 -30.16822 -28.67645 -27.28563 -25.51186 -25.05349 -23.38490 -22.85386 -22.17156 -21.44573 -19.91574 -19.70002 -19.01556 -18.47043 -18.22366 -17.53062 -17.43266 -17.00273 -16.62390 -16.54466 -16.23222 -16.04561 -15.61961 -15.59218 -15.10514 -14.72478 -14.58296 -14.37317 -14.23110 -13.93529 -13.54908 -13.51004 -13.19319 -13.00717 -12.92944 -12.81930 -12.60747 -12.28517 -12.21822 -11.91821 -11.90975 -11.71342 -11.60408 -11.56495 -11.14608 -10.87397 -10.00304 -9.66278 -9.43951 -9.27561 -8.65560 -6.43453 -0.28253 -0.02061 0.37071 0.76458 0.94546 1.37867 1.44494 1.53352 1.58630 1.73624 1.88616 2.19204 2.44213 2.74150 3.04448 3.55170 3.61027 3.65927 3.92672 3.95645 4.21312 4.24211 4.27422 4.29286 4.33984 4.46558 4.57850 4.67523 4.81543 4.91554 5.01630 5.04389 5.09671 5.12804 5.22661 5.27621 5.35125 5.43765 5.69332 5.74537 5.82193 5.98460 6.12522 6.24107 6.41815 6.53695 6.59383 6.84102 6.87552 6.91250 8.30743 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.003116 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.119355 B = 8982.905512 C =10510.859396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.354 6.354 3 C 0.527 3.473 4 O -0.518 6.518 5 C -0.196 4.196 6 C 0.170 3.830 7 O -0.495 6.495 8 C -0.154 4.154 9 C -0.047 4.047 10 C -0.164 4.164 11 C 0.193 3.807 12 N -0.663 5.663 13 C 0.568 3.432 14 O -0.543 6.543 15 C -0.144 4.144 16 C -0.200 4.200 17 C -0.094 4.094 18 C -0.208 4.208 19 C 0.068 3.932 20 C -0.493 4.493 21 H 0.085 0.915 22 C 0.029 3.971 23 N -0.828 5.828 24 Si 0.985 3.015 25 H -0.253 1.253 26 H -0.265 1.265 27 H -0.270 1.270 28 C -0.115 4.115 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.175 0.825 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.416 0.584 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.113 0.887 40 H 0.287 0.713 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -4.964 -17.140 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.270 6.270 3 C 0.370 3.630 4 O -0.407 6.407 5 C -0.200 4.200 6 C 0.124 3.876 7 O -0.309 6.309 8 C -0.173 4.173 9 C -0.065 4.065 10 C -0.184 4.184 11 C 0.096 3.904 12 N -0.307 5.307 13 C 0.361 3.639 14 O -0.421 6.421 15 C -0.147 4.147 16 C -0.220 4.220 17 C -0.111 4.111 18 C -0.228 4.228 19 C 0.066 3.934 20 C -0.523 4.523 21 H 0.103 0.897 22 C -0.186 4.186 23 N -0.454 5.454 24 Si 0.806 3.194 25 H -0.176 1.176 26 H -0.189 1.189 27 H -0.195 1.195 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.084 0.916 32 H 0.276 0.724 33 H 0.193 0.807 34 H 0.187 0.813 35 H 0.155 0.845 36 H 0.255 0.745 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.838 -4.973 -17.090 18.024 hybrid contribution -0.338 0.774 0.794 1.159 sum -3.176 -4.199 -16.296 17.126 Atomic orbital electron populations 1.23713 0.74000 1.06279 1.03054 1.86703 1.25594 1.31540 1.83156 1.20973 0.88788 0.81898 0.71322 1.90876 1.67143 1.36893 1.45752 1.19317 0.89508 1.17060 0.94143 1.18121 0.90462 0.96270 0.82765 1.84674 1.76286 1.36185 1.33778 1.21633 0.91834 1.03338 1.00450 1.21481 1.02040 0.93065 0.89951 1.21602 0.91652 1.03771 1.01404 1.17685 0.91969 0.97421 0.83325 1.43282 1.24642 1.54916 1.07812 1.18868 0.85423 0.75919 0.83712 1.90640 1.20536 1.46610 1.84318 1.19589 0.96550 1.06171 0.92367 1.20775 0.94196 1.07903 0.99105 1.20897 0.99503 0.98601 0.92143 1.21488 0.97975 1.04451 0.98883 1.17957 0.92278 0.90678 0.92512 1.19902 0.92615 1.34248 1.05525 0.89711 1.26833 0.97397 0.95196 0.99153 1.69853 1.06265 1.32646 1.36645 0.85103 0.78638 0.78169 0.77496 1.17624 1.18940 1.19474 1.21506 1.00410 1.00462 0.91200 0.91224 0.84507 0.91635 0.72381 0.80715 0.81333 0.84462 0.74547 0.85870 0.84225 0.86866 0.90217 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -8.87 10.58 -57.01 -0.60 -9.47 16 3 C 0.53 15.44 5.90 70.14 0.41 15.85 16 4 O -0.52 -17.37 16.90 19.69 0.33 -17.03 16 5 C -0.20 -5.65 5.78 -19.92 -0.12 -5.77 16 6 C 0.17 3.86 6.72 22.84 0.15 4.02 16 7 O -0.50 -9.19 12.95 -89.53 -1.16 -10.35 16 8 C -0.15 -2.83 9.97 22.35 0.22 -2.61 16 9 C -0.05 -1.01 10.02 22.27 0.22 -0.78 16 10 C -0.16 -5.07 8.73 22.37 0.20 -4.87 16 11 C 0.19 6.32 6.41 38.63 0.25 6.57 16 12 N -0.66 -23.79 5.05 -305.55 -1.54 -25.33 16 13 C 0.57 25.15 7.64 86.79 0.66 25.81 16 14 O -0.54 -26.61 13.39 -3.89 -0.05 -26.67 16 15 C -0.14 -6.79 5.87 -20.14 -0.12 -6.91 16 16 C -0.20 -8.05 9.54 22.70 0.22 -7.83 16 17 C -0.09 -3.69 10.01 22.18 0.22 -3.47 16 18 C -0.21 -9.54 9.78 22.77 0.22 -9.32 16 19 C 0.07 3.62 5.55 -21.32 -0.12 3.50 16 20 C -0.49 -26.26 9.06 23.47 0.21 -26.05 16 21 H 0.08 4.26 7.88 -2.91 -0.02 4.24 16 22 C 0.03 1.46 5.23 85.25 0.45 1.90 16 23 N -0.83 -44.81 10.85 21.83 0.24 -44.58 16 24 Si 0.99 38.74 29.58 68.60 2.03 40.77 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 27 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 28 C -0.12 -6.27 8.21 23.01 0.19 -6.08 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.42 4.23 9.06 -74.06 -0.67 3.56 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.14 5.00 5.73 -2.91 -0.02 4.99 16 36 H 0.42 13.28 6.04 -92.71 -0.56 12.72 16 37 H 0.12 4.00 6.39 -2.91 -0.02 3.98 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 41 H 0.11 6.44 5.77 -2.91 -0.02 6.42 16 Total: -1.00 -72.14 361.39 3.61 -68.53 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.11 Total: 38.58 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.47 Total: -14.45 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.30 Total: -69.91 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -1.48 Total: -63.53 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -72.14 3.61 -68.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188678036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.773 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds