Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34745 * 117.00053 * 2 1 4 4 O 1.21505 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.47513 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.40014 * 120.00226 * 0.02562 * 5 3 2 7 7 C 1.37611 * 120.24088 * 180.02562 * 6 5 3 8 8 C 1.38956 * 120.24579 * 359.97438 * 7 6 5 9 9 O 1.35473 * 120.00197 * 179.97438 * 8 7 6 10 10 C 1.40376 * 120.00071 * 359.97438 * 8 7 6 11 11 C 1.47543 * 120.12436 * 180.02562 * 10 8 7 12 12 O 1.21597 * 120.00069 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00761 * 180.02562 * 11 10 8 14 14 C 1.39867 * 120.00430 * 175.30059 * 13 11 10 15 15 C 1.39311 * 119.94939 * 326.41157 * 14 13 11 16 16 C 1.38477 * 120.42667 * 179.75937 * 15 14 13 17 17 C 1.37689 * 120.32477 * 0.52662 * 16 15 14 18 18 C 1.40740 * 119.88809 * 359.73355 * 17 16 15 19 19 C 1.41406 * 120.21123 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99892 * 151.38057 * 19 18 17 21 21 C 1.39929 * 120.00001 * 331.38373 * 19 18 17 22 22 N 1.30833 * 119.99984 * 166.58238 * 21 19 18 23 23 Si 1.86799 * 119.99808 * 346.58377 * 21 19 18 24 24 H 1.48502 * 109.47188 * 95.30817 * 23 21 19 25 25 H 1.48505 * 109.47225 * 215.30392 * 23 21 19 26 26 H 1.48495 * 109.47390 * 335.30845 * 23 21 19 27 27 C 1.38262 * 119.95073 * 146.69235 * 14 13 11 28 28 C 1.39293 * 119.75976 * 0.27911 * 10 8 7 29 29 H 1.09004 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47066 * 300.00021 * 1 2 3 31 31 H 1.08996 * 109.47199 * 60.00071 * 1 2 3 32 32 H 1.08001 * 119.87899 * 359.97438 * 6 5 3 33 33 H 1.07999 * 119.87710 * 179.97438 * 7 6 5 34 34 H 0.96699 * 113.99509 * 270.02186 * 9 8 7 35 35 H 0.97003 * 119.99581 * 355.02765 * 13 11 10 36 36 H 1.08004 * 119.78166 * 0.02846 * 15 14 13 37 37 H 1.07997 * 119.83741 * 180.25770 * 16 15 14 38 38 H 1.07997 * 120.05712 * 179.76183 * 17 16 15 39 39 H 0.97000 * 119.99896 * 180.02562 * 22 21 19 40 40 H 1.08004 * 120.15890 * 359.95959 * 27 14 13 41 41 H 1.08000 * 120.11977 * 179.72054 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5368 1.2778 0.0006 6 6 4.2994 0.1036 0.0006 7 6 5.6739 0.1699 0.0016 8 6 6.3152 1.4026 0.0022 9 8 7.6686 1.4621 0.0038 10 6 5.5607 2.5863 0.0011 11 6 6.2388 3.8967 0.0011 12 8 7.4534 3.9527 0.0016 13 7 5.5120 5.0317 0.0006 14 6 6.1514 6.2717 0.0998 15 6 7.3146 6.3958 0.8563 16 6 7.9585 7.6176 0.9573 17 6 7.4495 8.7265 0.3192 18 6 6.2721 8.6176 -0.4442 19 6 5.7437 9.7519 -1.1028 20 1 5.1700 9.6311 -2.0099 21 6 5.9641 11.0307 -0.5793 22 7 5.7116 12.0880 -1.3074 23 14 6.6187 11.2283 1.1590 24 1 8.0949 11.3845 1.1172 25 1 6.0112 12.4311 1.7831 26 1 6.2707 10.0264 1.9586 27 6 5.6249 7.3737 -0.5483 28 6 4.1694 2.5194 0.0054 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8071 -0.8577 0.0006 33 1 6.2564 -0.7396 0.0020 34 1 8.0605 1.4792 0.8876 35 1 4.5457 4.9888 -0.0726 36 1 7.7192 5.5325 1.3638 37 1 8.8619 7.7021 1.5429 38 1 7.9530 9.6781 0.4040 39 1 5.8647 12.9745 -0.9447 40 1 4.7210 7.2794 -1.1319 41 1 3.5831 3.4264 0.0091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192396161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -104.217276 kcal Electronic energy + Delta-G solvation = -27995.080718 eV Core-core repulsion = 23805.523328 eV Total energy + Delta-G solvation = -4189.557390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13149 -40.35961 -39.05878 -37.34683 -37.18383 -36.59142 -34.52629 -33.30947 -31.89921 -30.94371 -30.28779 -28.67872 -27.99162 -25.15669 -24.46276 -24.13124 -22.29090 -21.17013 -21.10488 -19.97322 -18.87117 -18.46320 -17.78868 -17.39322 -16.72930 -16.58873 -16.12956 -15.89717 -15.84091 -15.11088 -14.94833 -14.70904 -14.39619 -14.16105 -13.81222 -13.79663 -13.55585 -13.09174 -12.76779 -12.67589 -12.62524 -12.42524 -12.29926 -12.03278 -11.71325 -11.19368 -11.06403 -11.04332 -10.96116 -10.74191 -10.62022 -10.17525 -9.70848 -9.59858 -9.55406 -9.38217 -9.19998 -8.97366 -7.69172 -7.15696 -6.91673 -4.50079 0.10573 0.53723 1.94736 2.24473 2.43329 2.63247 2.95523 3.13175 3.23874 3.30069 3.34002 3.51990 3.79323 3.99960 4.23795 4.32715 4.39217 4.53819 4.71574 4.77258 4.81810 4.84678 5.09038 5.18735 5.32098 5.42549 5.50964 5.68030 5.79007 5.94655 6.02239 6.10128 6.32008 6.35911 6.50467 6.71225 6.76985 7.12853 7.29629 7.33617 7.36672 7.45692 7.64202 7.84284 7.86506 8.09310 8.34031 8.45188 8.63610 8.80943 10.10867 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002649 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.529276 B =10566.980061 C =12120.918935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.500 6.500 5 C -0.148 4.148 6 C -0.024 4.024 7 C -0.169 4.169 8 C 0.209 3.791 9 O -0.473 6.473 10 C -0.170 4.170 11 C 0.552 3.448 12 O -0.499 6.499 13 N -0.663 5.663 14 C 0.168 3.832 15 C -0.230 4.230 16 C -0.067 4.067 17 C -0.241 4.241 18 C 0.105 3.895 19 C -0.445 4.445 20 H 0.090 0.910 21 C 0.082 3.918 22 N -0.813 5.813 23 Si 0.915 3.085 24 H -0.272 1.272 25 H -0.294 1.294 26 H -0.240 1.240 27 C -0.230 4.230 28 C -0.005 4.005 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.402 0.598 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.104 0.896 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -25.011 5.587 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.388 6.388 5 C -0.150 4.150 6 C -0.042 4.042 7 C -0.188 4.188 8 C 0.162 3.838 9 O -0.285 6.285 10 C -0.174 4.174 11 C 0.339 3.661 12 O -0.373 6.373 13 N -0.308 5.308 14 C 0.076 3.924 15 C -0.251 4.251 16 C -0.086 4.086 17 C -0.261 4.261 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.108 0.892 21 C -0.136 4.136 22 N -0.438 5.438 23 Si 0.743 3.257 24 H -0.198 1.198 25 H -0.222 1.222 26 H -0.164 1.164 27 C -0.252 4.252 28 C -0.024 4.024 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.263 0.737 35 H 0.237 0.763 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.785 -24.428 4.920 25.582 hybrid contribution -0.424 0.347 0.984 1.126 sum -6.209 -24.082 5.903 25.560 Atomic orbital electron populations 1.23318 0.75579 1.03876 1.02930 1.86519 1.23861 1.32453 1.84437 1.21014 0.88851 0.81647 0.72943 1.90892 1.66640 1.35889 1.45385 1.18930 0.89423 0.94528 1.12075 1.21466 0.93177 0.98163 0.91393 1.21446 0.94650 0.97698 1.04982 1.18800 0.84030 0.90526 0.90470 1.84676 1.14234 1.95825 1.33776 1.20465 0.93253 0.94508 1.09185 1.17867 0.87248 0.83176 0.77844 1.90839 1.12630 1.86715 1.47162 1.43431 1.10218 1.04987 1.72154 1.17470 0.94703 0.82799 0.97461 1.20307 0.99508 0.97545 1.07707 1.20464 0.97737 0.92651 0.97780 1.21001 0.99430 0.97514 1.08115 1.17482 0.89983 0.92508 0.89855 1.19460 1.29351 0.88912 1.09649 0.89178 1.26167 0.92104 0.95294 1.00075 1.69663 1.36988 0.99709 1.37401 0.86276 0.78703 0.78255 0.82486 1.19841 1.22249 1.16366 1.20707 1.03156 0.93086 1.08209 1.21401 0.92876 0.97588 0.90547 0.87852 0.91635 0.91602 0.83510 0.83592 0.73665 0.76276 0.87437 0.88402 0.88327 0.90467 0.87785 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.36 -2.99 9.80 -40.61 -0.40 -3.39 16 3 C 0.51 5.40 7.89 34.51 0.27 5.68 16 4 O -0.50 -6.65 16.12 -19.27 -0.31 -6.96 16 5 C -0.15 -1.46 5.87 -105.04 -0.62 -2.07 16 6 C -0.02 -0.18 9.60 -39.15 -0.38 -0.55 16 7 C -0.17 -1.32 9.96 -39.54 -0.39 -1.71 16 8 C 0.21 2.27 6.72 -38.51 -0.26 2.01 16 9 O -0.47 -5.39 11.54 -40.05 -0.46 -5.85 16 10 C -0.17 -2.16 5.88 -104.91 -0.62 -2.78 16 11 C 0.55 9.22 7.50 -12.47 -0.09 9.13 16 12 O -0.50 -9.83 12.81 -16.66 -0.21 -10.05 16 13 N -0.66 -11.46 5.28 -10.85 -0.06 -11.52 16 14 C 0.17 3.61 6.27 -83.78 -0.52 3.08 16 15 C -0.23 -5.10 8.66 -39.09 -0.34 -5.44 16 16 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 17 C -0.24 -5.94 6.92 -38.84 -0.27 -6.20 16 18 C 0.11 2.70 5.19 -106.85 -0.55 2.15 16 19 C -0.44 -12.13 9.61 -37.74 -0.36 -12.49 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.08 2.17 5.47 -17.34 -0.09 2.07 16 22 N -0.81 -21.92 13.93 55.55 0.77 -21.15 16 23 Si 0.92 21.05 24.37 -169.99 -4.14 16.91 16 24 H -0.27 -6.09 6.76 56.52 0.38 -5.71 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.24 -5.61 6.49 56.52 0.37 -5.25 16 27 C -0.23 -5.36 9.70 -38.68 -0.38 -5.74 16 28 C -0.01 -0.06 9.07 -38.78 -0.35 -0.41 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.15 0.74 7.59 -52.49 -0.40 0.34 16 33 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.40 2.96 9.06 45.56 0.41 3.38 16 35 H 0.40 5.72 6.85 -40.82 -0.28 5.44 16 36 H 0.11 2.30 6.39 -52.48 -0.34 1.96 16 37 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.10 2.41 4.21 -52.49 -0.22 2.18 16 39 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 40 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 41 H 0.15 1.59 5.98 -52.49 -0.31 1.28 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -33.78 354.11 -7.04 -40.83 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.28 Total: 9.76 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -4.28 Total: -13.91 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.72 Total: -32.67 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -1.38 Total: -26.25 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.14 Total: 16.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.78 -7.04 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192396161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.392 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds