Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34745 * 117.00053 * 2 1 4 4 O 1.21505 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.47513 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.40014 * 120.00226 * 0.02562 * 5 3 2 7 7 C 1.37611 * 120.24088 * 180.02562 * 6 5 3 8 8 C 1.38956 * 120.24579 * 359.97438 * 7 6 5 9 9 O 1.35473 * 120.00197 * 179.97438 * 8 7 6 10 10 C 1.40376 * 120.00071 * 359.97438 * 8 7 6 11 11 C 1.47543 * 120.12436 * 180.02562 * 10 8 7 12 12 O 1.21597 * 120.00069 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00761 * 180.02562 * 11 10 8 14 14 C 1.39867 * 120.00430 * 175.30059 * 13 11 10 15 15 C 1.39311 * 119.94939 * 326.41157 * 14 13 11 16 16 C 1.38477 * 120.42667 * 179.75937 * 15 14 13 17 17 C 1.37689 * 120.32477 * 0.52662 * 16 15 14 18 18 C 1.40740 * 119.88809 * 359.73355 * 17 16 15 19 19 C 1.41406 * 120.21123 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99892 * 151.38057 * 19 18 17 21 21 C 1.39929 * 120.00001 * 331.38373 * 19 18 17 22 22 N 1.30833 * 119.99984 * 166.58238 * 21 19 18 23 23 Si 1.86799 * 119.99808 * 346.58377 * 21 19 18 24 24 H 1.48502 * 109.47188 * 95.30817 * 23 21 19 25 25 H 1.48505 * 109.47225 * 215.30392 * 23 21 19 26 26 H 1.48495 * 109.47390 * 335.30845 * 23 21 19 27 27 C 1.38262 * 119.95073 * 146.69235 * 14 13 11 28 28 C 1.39293 * 119.75976 * 0.27911 * 10 8 7 29 29 H 1.09004 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47066 * 300.00021 * 1 2 3 31 31 H 1.08996 * 109.47199 * 60.00071 * 1 2 3 32 32 H 1.08001 * 119.87899 * 359.97438 * 6 5 3 33 33 H 1.07999 * 119.87710 * 179.97438 * 7 6 5 34 34 H 0.96699 * 113.99509 * 270.02186 * 9 8 7 35 35 H 0.97003 * 119.99581 * 355.02765 * 13 11 10 36 36 H 1.08004 * 119.78166 * 0.02846 * 15 14 13 37 37 H 1.07997 * 119.83741 * 180.25770 * 16 15 14 38 38 H 1.07997 * 120.05712 * 179.76183 * 17 16 15 39 39 H 0.97000 * 119.99896 * 180.02562 * 22 21 19 40 40 H 1.08004 * 120.15890 * 359.95959 * 27 14 13 41 41 H 1.08000 * 120.11977 * 179.72054 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5368 1.2778 0.0006 6 6 4.2994 0.1036 0.0006 7 6 5.6739 0.1699 0.0016 8 6 6.3152 1.4026 0.0022 9 8 7.6686 1.4621 0.0038 10 6 5.5607 2.5863 0.0011 11 6 6.2388 3.8967 0.0011 12 8 7.4534 3.9527 0.0016 13 7 5.5120 5.0317 0.0006 14 6 6.1514 6.2717 0.0998 15 6 7.3146 6.3958 0.8563 16 6 7.9585 7.6176 0.9573 17 6 7.4495 8.7265 0.3192 18 6 6.2721 8.6176 -0.4442 19 6 5.7437 9.7519 -1.1028 20 1 5.1700 9.6311 -2.0099 21 6 5.9641 11.0307 -0.5793 22 7 5.7116 12.0880 -1.3074 23 14 6.6187 11.2283 1.1590 24 1 8.0949 11.3845 1.1172 25 1 6.0112 12.4311 1.7831 26 1 6.2707 10.0264 1.9586 27 6 5.6249 7.3737 -0.5483 28 6 4.1694 2.5194 0.0054 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8071 -0.8577 0.0006 33 1 6.2564 -0.7396 0.0020 34 1 8.0605 1.4792 0.8876 35 1 4.5457 4.9888 -0.0726 36 1 7.7192 5.5325 1.3638 37 1 8.8619 7.7021 1.5429 38 1 7.9530 9.6781 0.4040 39 1 5.8647 12.9745 -0.9447 40 1 4.7210 7.2794 -1.1319 41 1 3.5831 3.4264 0.0091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192396161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -126.651929 kcal Electronic energy + Delta-G solvation = -27996.053558 eV Core-core repulsion = 23805.523328 eV Total energy + Delta-G solvation = -4190.530230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05815 -41.38231 -40.24903 -38.96804 -37.96675 -37.39532 -36.14953 -35.12144 -32.92586 -32.16103 -31.70218 -30.29800 -28.55994 -27.09075 -25.51557 -24.91020 -23.54332 -22.92097 -22.15554 -21.34944 -19.93855 -19.43111 -19.32386 -18.24318 -17.87749 -17.63748 -17.44077 -17.24948 -16.79075 -16.44707 -16.34805 -16.01387 -15.65184 -15.38639 -14.90307 -14.83859 -14.54268 -14.45979 -14.35382 -13.94739 -13.86120 -13.52876 -13.37057 -13.21274 -12.91209 -12.89842 -12.62361 -12.47010 -12.04447 -11.83348 -11.82951 -11.77166 -11.57119 -11.21772 -11.09001 -10.65992 -10.34133 -10.00126 -9.59138 -8.90906 -8.89616 -6.55453 -0.67538 -0.30188 0.67017 0.76089 1.20026 1.27476 1.41765 1.50378 1.56500 1.83671 2.00485 2.12915 2.51086 2.64400 3.02564 3.37325 3.49038 3.58428 3.60404 3.99675 4.02369 4.25829 4.31574 4.35941 4.42053 4.47226 4.56259 4.60030 4.70338 4.79885 4.82349 4.92096 4.95474 4.98278 5.09537 5.24345 5.30943 5.43369 5.53664 5.65546 5.76900 5.89522 6.16134 6.30508 6.48821 6.58125 6.67163 6.70652 6.78382 7.07659 8.18288 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002649 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.529276 B =10566.980061 C =12120.918935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.513 3.487 4 O -0.536 6.536 5 C -0.157 4.157 6 C 0.001 3.999 7 C -0.154 4.154 8 C 0.207 3.793 9 O -0.490 6.490 10 C -0.192 4.192 11 C 0.553 3.447 12 O -0.532 6.532 13 N -0.662 5.662 14 C 0.175 3.825 15 C -0.226 4.226 16 C -0.068 4.068 17 C -0.256 4.256 18 C 0.088 3.912 19 C -0.479 4.479 20 H 0.057 0.943 21 C 0.045 3.955 22 N -0.852 5.852 23 Si 0.970 3.030 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.247 1.247 27 C -0.242 4.242 28 C -0.007 4.007 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.418 0.582 35 H 0.415 0.585 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.294 0.706 40 H 0.109 0.891 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -28.885 7.257 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.360 3.640 4 O -0.427 6.427 5 C -0.158 4.158 6 C -0.017 4.017 7 C -0.172 4.172 8 C 0.160 3.840 9 O -0.305 6.305 10 C -0.196 4.196 11 C 0.343 3.657 12 O -0.410 6.410 13 N -0.307 5.307 14 C 0.081 3.919 15 C -0.247 4.247 16 C -0.087 4.087 17 C -0.276 4.276 18 C 0.085 3.915 19 C -0.508 4.508 20 H 0.075 0.925 21 C -0.169 4.169 22 N -0.479 5.479 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.208 1.208 26 H -0.170 1.170 27 C -0.263 4.263 28 C -0.026 4.026 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.199 0.801 33 H 0.199 0.801 34 H 0.281 0.719 35 H 0.253 0.747 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.484 -28.346 6.589 29.614 hybrid contribution -0.577 1.213 0.445 1.415 sum -6.061 -27.133 7.034 28.678 Atomic orbital electron populations 1.23619 0.74096 1.06092 1.02607 1.86507 1.25254 1.30996 1.83772 1.21157 0.89097 0.81767 0.72023 1.90882 1.67435 1.37176 1.47249 1.18979 0.89346 0.94834 1.12651 1.21850 0.92964 0.98571 0.88285 1.21731 0.94796 0.97487 1.03136 1.19049 0.83891 0.90957 0.90149 1.84630 1.14655 1.95882 1.35325 1.20132 0.93750 0.92880 1.12801 1.18464 0.86982 0.84073 0.76227 1.90805 1.14080 1.87341 1.48737 1.43424 1.11039 1.03993 1.72292 1.17521 0.94433 0.83971 0.95964 1.20621 0.99284 0.97861 1.06892 1.20827 0.98624 0.91915 0.97289 1.21103 0.99299 0.98453 1.08712 1.17639 0.90721 0.92764 0.90392 1.19441 1.31096 0.90570 1.09743 0.92506 1.26859 0.92175 0.94627 1.03279 1.69692 1.38746 1.00393 1.39028 0.85436 0.78848 0.78232 0.78073 1.18482 1.20806 1.17022 1.20839 1.03604 0.93229 1.08677 1.21327 0.92265 0.98333 0.90652 0.84346 0.91933 0.92071 0.80086 0.80109 0.71942 0.74705 0.86219 0.85131 0.88219 0.89541 0.87317 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.47 16 2 O -0.35 -4.89 9.80 -56.55 -0.55 -5.44 16 3 C 0.51 9.97 7.89 70.27 0.55 10.53 16 4 O -0.54 -14.07 16.12 19.82 0.32 -13.75 16 5 C -0.16 -2.71 5.87 -20.14 -0.12 -2.83 16 6 C 0.00 0.01 9.60 22.55 0.22 0.23 16 7 C -0.15 -1.72 9.96 22.29 0.22 -1.50 16 8 C 0.21 3.98 6.72 22.96 0.15 4.13 16 9 O -0.49 -10.17 11.54 -66.74 -0.77 -10.94 16 10 C -0.19 -4.63 5.88 -20.05 -0.12 -4.75 16 11 C 0.55 18.16 7.50 86.70 0.65 18.81 16 12 O -0.53 -20.63 12.81 16.95 0.22 -20.41 16 13 N -0.66 -22.76 5.28 -306.49 -1.62 -24.38 16 14 C 0.17 7.49 6.27 38.12 0.24 7.73 16 15 C -0.23 -9.74 8.66 22.58 0.20 -9.55 16 16 C -0.07 -2.97 10.02 22.20 0.22 -2.74 16 17 C -0.26 -12.55 6.92 22.75 0.16 -12.40 16 18 C 0.09 4.64 5.19 -21.31 -0.11 4.53 16 19 C -0.48 -27.49 9.61 23.46 0.23 -27.26 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 21 C 0.04 2.45 5.47 85.25 0.47 2.91 16 22 N -0.85 -47.65 13.93 21.82 0.30 -47.34 16 23 Si 0.97 43.67 24.37 68.60 1.67 45.34 16 24 H -0.26 -11.04 6.76 99.48 0.67 -10.37 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.25 -11.24 6.49 99.48 0.65 -10.59 16 27 C -0.24 -11.55 9.70 22.85 0.22 -11.33 16 28 C -0.01 -0.14 9.07 22.79 0.21 0.06 16 29 H 0.14 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.18 0.76 7.59 -2.91 -0.02 0.74 16 33 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.42 5.36 9.06 -74.06 -0.67 4.68 16 35 H 0.41 11.91 6.85 -92.71 -0.64 11.27 16 36 H 0.12 4.91 6.39 -2.91 -0.02 4.89 16 37 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.10 4.81 4.21 -2.91 -0.01 4.79 16 39 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 40 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.14 3.06 5.98 -2.91 -0.02 3.04 16 Total: -1.00 -75.94 354.11 3.88 -72.06 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.27 Total: 26.80 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.58 Total: -21.95 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.31 Total: -71.72 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.79 Total: -50.54 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.67 Total: 45.34 kcal Total: -75.94 3.88 -72.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192396161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.592 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds