Wall clock time and date at job start Sat Apr 11 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34709 * 117.00120 * 2 1 4 4 O 1.21470 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.47738 * 120.00010 * 180.02562 * 3 2 1 6 6 C 1.39679 * 120.50316 * 0.02562 * 5 3 2 7 7 N 1.31698 * 120.82999 * 179.97438 * 6 5 3 8 8 C 1.31802 * 122.02639 * 359.97438 * 7 6 5 9 9 C 1.39451 * 120.92112 * 359.97438 * 8 7 6 10 10 C 1.48331 * 120.47320 * 180.27426 * 9 8 7 11 11 C 1.39726 * 119.54590 * 179.71940 * 10 9 8 12 12 C 1.37821 * 121.15496 * 179.97438 * 11 10 9 13 13 C 1.39506 * 120.19320 * 359.97438 * 12 11 10 14 14 C 1.47165 * 120.45184 * 180.02562 * 13 12 11 15 15 O 1.21543 * 120.00566 * 174.33451 * 14 13 12 16 16 O 1.34832 * 119.99523 * 354.33454 * 14 13 12 17 17 C 1.45203 * 116.99752 * 180.02562 * 16 14 13 18 18 C 1.46494 * 119.10321 * 0.02562 * 13 12 11 19 19 C 1.40914 * 120.54749 * 180.02562 * 18 13 12 20 20 H 1.08004 * 119.99514 * 327.49568 * 19 18 13 21 21 C 1.40279 * 120.00143 * 147.49713 * 19 18 13 22 22 N 1.30622 * 119.99709 * 350.25113 * 21 19 18 23 23 Si 1.86795 * 119.99941 * 170.24977 * 21 19 18 24 24 H 1.48503 * 109.47124 * 90.00054 * 23 21 19 25 25 H 1.48504 * 109.46962 * 209.99813 * 23 21 19 26 26 H 1.48500 * 109.47590 * 330.00029 * 23 21 19 27 27 C 1.38713 * 119.54196 * 359.44777 * 10 9 8 28 28 C 1.39560 * 119.05912 * 359.97438 * 9 8 7 29 29 H 1.08992 * 109.46780 * 59.99887 * 1 2 3 30 30 H 1.08992 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46471 * 300.00085 * 1 2 3 32 32 H 1.08001 * 119.58858 * 359.97438 * 6 5 3 33 33 H 1.08004 * 119.53655 * 180.02562 * 8 7 6 34 34 H 1.07993 * 119.42249 * 359.96080 * 11 10 9 35 35 H 1.08007 * 119.90177 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.46918 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.46957 * 300.00227 * 17 16 14 38 38 H 1.09002 * 109.47057 * 59.99645 * 17 16 14 39 39 H 0.96996 * 120.00022 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.13473 * 0.02562 * 27 10 9 41 41 H 1.07997 * 120.91219 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3100 0.1128 -0.0017 7 7 5.6256 0.1742 -0.0027 8 6 6.2717 1.3230 -0.0032 9 6 5.5802 2.5340 -0.0033 10 6 6.3174 3.8212 -0.0100 11 6 5.6051 5.0232 -0.0159 12 6 6.2562 6.2379 -0.0217 13 6 7.6504 6.2866 -0.0213 14 6 8.3515 7.5805 -0.0269 15 8 9.5619 7.6164 0.0774 16 8 7.6510 8.7262 -0.1478 17 6 8.4083 9.9651 -0.1462 18 6 8.4072 5.0323 -0.0152 19 6 9.8162 5.0459 -0.0140 20 1 10.3489 5.8378 -0.5197 21 6 10.5270 4.0311 0.6438 22 7 9.8956 3.1841 1.4120 23 14 12.3764 3.8911 0.4212 24 1 13.0627 4.7022 1.4587 25 1 12.7847 2.4695 0.5540 26 1 12.7521 4.3902 -0.9260 27 6 7.7045 3.8149 -0.0047 28 6 4.1847 2.5178 -0.0033 29 1 -0.3632 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.8212 -0.8503 -0.0017 33 1 7.3517 1.3264 -0.0045 34 1 4.5254 5.0000 -0.0161 35 1 5.6853 7.1547 -0.0258 36 1 7.7255 10.8083 -0.2503 37 1 8.9566 10.0545 0.7915 38 1 9.1113 9.9622 -0.9793 39 1 10.3871 2.4826 1.8672 40 1 8.2425 2.8784 0.0039 41 1 3.6192 3.4379 -0.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243147821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:57 Heat of formation + Delta-G solvation = -114.860045 kcal Electronic energy + Delta-G solvation = -28152.527132 eV Core-core repulsion = 23962.508236 eV Total energy + Delta-G solvation = -4190.018895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77083 -39.63446 -39.25412 -37.31293 -36.55873 -35.35321 -34.15734 -32.73648 -32.26873 -29.97476 -29.10951 -27.96488 -27.09305 -25.81261 -24.59517 -23.69587 -22.29510 -21.18904 -20.60211 -19.64358 -18.19689 -17.40468 -17.16926 -16.92646 -16.49225 -16.37202 -15.94486 -15.64500 -15.43222 -15.26175 -14.60639 -13.99491 -13.81453 -13.72796 -13.38495 -13.21775 -13.07060 -12.91802 -12.63271 -12.62175 -12.32838 -12.05316 -11.80431 -11.55146 -11.34178 -11.26029 -11.09815 -10.98378 -10.90453 -10.73227 -10.47097 -10.02664 -9.97407 -9.82771 -9.55815 -9.28266 -9.21157 -8.98718 -7.69750 -7.40363 -7.09879 -4.69334 0.56754 1.07614 2.14587 2.51194 2.54997 2.64038 2.95937 3.01537 3.08623 3.65834 3.68233 3.75660 4.09019 4.43612 4.44319 4.69765 4.89758 4.91934 4.98198 5.01235 5.10993 5.29500 5.32051 5.45828 5.55434 5.62957 5.71806 5.79107 5.97694 6.05456 6.10768 6.19533 6.27002 6.32893 6.64399 6.77167 6.80786 6.90316 7.13330 7.29350 7.41710 7.59269 7.65304 7.66665 7.84148 8.02526 8.32582 8.44797 8.54456 8.99267 9.80490 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003156 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.593731 B = 8869.493048 C =11117.710582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.518 3.482 4 O -0.505 6.505 5 C -0.185 4.185 6 C 0.138 3.862 7 N -0.488 5.488 8 C 0.138 3.862 9 C -0.073 4.073 10 C -0.026 4.026 11 C -0.244 4.244 12 C -0.023 4.023 13 C -0.257 4.257 14 C 0.504 3.496 15 O -0.519 6.519 16 O -0.374 6.374 17 C 0.041 3.959 18 C 0.145 3.855 19 C -0.397 4.397 20 H 0.109 0.891 21 C 0.068 3.932 22 N -0.775 5.775 23 Si 0.923 3.077 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.128 4.128 28 C -0.014 4.014 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.165 0.835 33 H 0.172 0.828 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.290 0.710 40 H 0.130 0.870 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -4.326 -1.906 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.393 6.393 5 C -0.188 4.188 6 C -0.021 4.021 7 N -0.195 5.195 8 C -0.018 4.018 9 C -0.075 4.075 10 C -0.027 4.027 11 C -0.263 4.263 12 C -0.041 4.041 13 C -0.260 4.260 14 C 0.355 3.645 15 O -0.410 6.410 16 O -0.292 6.292 17 C -0.054 4.054 18 C 0.141 3.859 19 C -0.424 4.424 20 H 0.126 0.874 21 C -0.153 4.153 22 N -0.398 5.398 23 Si 0.746 3.254 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.180 1.180 27 C -0.147 4.147 28 C -0.039 4.039 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.147 0.853 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.933 -4.981 -1.712 10.370 hybrid contribution 0.089 0.963 0.163 0.980 sum -8.844 -4.018 -1.549 9.836 Atomic orbital electron populations 1.23279 0.75966 1.03719 1.02689 1.86538 1.23564 1.32613 1.84474 1.21038 0.88782 0.81433 0.72529 1.90838 1.66680 1.36001 1.45812 1.19993 0.89920 0.96206 1.12666 1.23091 0.89462 0.97483 0.92059 1.67766 1.09340 1.29290 1.13151 1.23457 1.01457 0.86471 0.90402 1.20084 0.92624 0.95578 0.99180 1.18303 0.93243 0.89693 1.01474 1.20182 0.97608 0.91530 1.17027 1.20721 0.93018 0.96504 0.93876 1.19757 0.92376 0.88705 1.25129 1.21266 0.85910 0.83771 0.73594 1.90728 1.15184 1.87213 1.47902 1.86593 1.41879 1.15229 1.85518 1.22979 0.96590 0.84042 1.01765 1.18326 0.92873 0.88435 0.86274 1.20300 0.91430 1.06388 1.24236 0.87355 1.26235 1.02556 0.93425 0.93117 1.69667 1.39403 1.12137 1.18643 0.86042 0.80443 0.78276 0.80642 1.18987 1.19790 1.18003 1.21420 0.90967 0.98577 1.03729 1.21872 0.93943 0.97122 0.90932 0.91796 0.87952 0.91799 0.81788 0.81138 0.88297 0.87461 0.89396 0.92760 0.92779 0.89889 0.85279 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.36 -4.07 9.84 -40.52 -0.40 -4.47 16 3 C 0.52 7.30 7.91 34.61 0.27 7.58 16 4 O -0.50 -8.21 16.20 -19.24 -0.31 -8.52 16 5 C -0.18 -2.73 5.88 -104.88 -0.62 -3.35 16 6 C 0.14 1.93 10.78 -17.07 -0.18 1.74 16 7 N -0.49 -7.82 10.33 -12.62 -0.13 -7.95 16 8 C 0.14 2.36 10.58 -17.11 -0.18 2.18 16 9 C -0.07 -1.30 5.89 -104.80 -0.62 -1.92 16 10 C -0.03 -0.53 5.86 -105.01 -0.62 -1.14 16 11 C -0.24 -4.93 9.38 -39.18 -0.37 -5.29 16 12 C -0.02 -0.48 9.60 -39.26 -0.38 -0.86 16 13 C -0.26 -6.08 6.07 -102.48 -0.62 -6.70 16 14 C 0.50 11.67 7.86 34.35 0.27 11.94 16 15 O -0.52 -13.03 13.54 -19.30 -0.26 -13.29 16 16 O -0.37 -7.37 9.84 -40.86 -0.40 -7.77 16 17 C 0.04 0.62 10.57 101.05 1.07 1.69 16 18 C 0.15 3.59 5.67 -104.68 -0.59 2.99 16 19 C -0.40 -9.96 7.85 -37.80 -0.30 -10.25 16 20 H 0.11 2.82 5.96 -52.48 -0.31 2.51 16 21 C 0.07 1.56 5.26 -17.30 -0.09 1.47 16 22 N -0.77 -17.83 11.05 55.56 0.61 -17.22 16 23 Si 0.92 17.81 29.57 -169.99 -5.03 12.78 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 26 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 27 C -0.13 -2.90 8.02 -38.53 -0.31 -3.21 16 28 C -0.01 -0.22 9.06 -38.49 -0.35 -0.57 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.16 1.81 7.61 -52.49 -0.40 1.42 16 33 H 0.17 2.91 6.16 -52.48 -0.32 2.58 16 34 H 0.10 1.77 6.16 -52.49 -0.32 1.44 16 35 H 0.11 2.04 7.63 -52.48 -0.40 1.64 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 40 H 0.13 2.86 4.58 -52.49 -0.24 2.62 16 41 H 0.15 2.41 5.92 -52.49 -0.31 2.09 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -28.71 359.61 -7.02 -35.73 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.98 Total: 7.62 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.54 Total: -2.33 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.48 Total: -25.16 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.37 Total: -34.05 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.71 -7.02 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243147821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.129 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds