Wall clock time and date at job start Sat Apr 11 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42104 * 110.54206 * 2 1 4 4 O 1.42097 * 110.54347 * 223.24732 * 2 1 3 5 5 N 1.65598 * 104.45048 * 111.61931 * 2 1 3 6 6 C 1.39678 * 119.99708 * 60.01543 * 5 2 1 7 7 C 1.38936 * 120.07341 * 35.49056 * 6 5 2 8 8 C 1.38079 * 119.92139 * 180.27173 * 7 6 5 9 9 C 1.38307 * 120.07655 * 359.72611 * 8 7 6 10 10 C 1.38261 * 120.15329 * 359.97438 * 9 8 7 11 11 C 1.38132 * 120.07022 * 0.04619 * 10 9 8 12 12 C 1.50703 * 120.03490 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47249 * 264.99823 * 12 11 10 14 14 O 1.20826 * 120.00050 * 0.02562 * 13 12 11 15 15 O 1.34231 * 120.00315 * 180.02562 * 13 12 11 16 16 C 1.45192 * 117.00415 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47526 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47201 * 179.97438 * 17 16 15 19 19 C 1.50710 * 109.46810 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99755 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00028 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99625 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47337 * 60.00052 * 23 21 19 25 25 H 1.48508 * 109.46898 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47212 * 299.99186 * 23 21 19 27 27 H 1.09001 * 109.47398 * 308.37769 * 1 2 3 28 28 H 1.08999 * 109.47277 * 68.37982 * 1 2 3 29 29 H 1.08998 * 109.47191 * 188.38000 * 1 2 3 30 30 H 0.96996 * 120.00775 * 240.01857 * 5 2 1 31 31 H 1.08000 * 120.03736 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.96348 * 179.75209 * 8 7 6 33 33 H 1.08000 * 119.92268 * 179.97438 * 9 8 7 34 34 H 1.07993 * 119.96472 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46681 * 144.99411 * 12 11 10 36 36 H 1.09003 * 109.46986 * 25.00319 * 12 11 10 37 37 H 1.09006 * 109.47224 * 300.00188 * 16 15 13 38 38 H 1.09001 * 109.47183 * 59.99314 * 16 15 13 39 39 H 1.09009 * 109.46727 * 299.99483 * 17 16 15 40 40 H 1.08992 * 109.47435 * 59.99196 * 17 16 15 41 41 H 1.09002 * 109.47514 * 299.99200 * 18 17 16 42 42 H 1.08992 * 109.47520 * 59.99857 * 18 17 16 43 43 H 0.97005 * 119.99985 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5908 1.4908 6 6 1.8161 -1.8696 1.8737 7 6 1.7482 -2.8899 0.9330 8 6 1.3359 -4.1515 1.3138 9 6 0.9962 -4.4015 2.6310 10 6 1.0686 -3.3901 3.5709 11 6 1.4798 -2.1256 3.1967 12 6 1.5578 -1.0236 4.2217 13 6 0.2809 -0.2237 4.1975 14 8 -0.6021 -0.5185 3.4273 15 8 0.1245 0.8163 5.0316 16 6 -1.1313 1.5409 4.9535 17 6 -1.1251 2.6834 5.9711 18 6 -2.4481 3.4472 5.8883 19 6 -2.4422 4.5722 6.8912 20 1 -1.5812 4.7265 7.5245 21 6 -3.5366 5.4037 7.0009 22 7 -4.5854 5.2155 6.2300 23 14 -3.5289 6.7985 8.2434 24 1 -2.4052 7.7220 7.9440 25 1 -4.8132 7.5399 8.1631 26 1 -3.3624 6.2428 9.6103 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3786 -0.9553 29 1 -0.3633 -1.0167 0.1498 30 1 2.7547 -0.0489 2.0982 31 1 2.0129 -2.6952 -0.0958 32 1 1.2790 -4.9441 0.5824 33 1 0.6737 -5.3891 2.9260 34 1 0.8030 -3.5888 4.5986 35 1 2.3998 -0.3712 3.9903 36 1 1.6960 -1.4577 5.2120 37 1 -1.2535 1.9492 3.9502 38 1 -1.9562 0.8630 5.1727 39 1 -1.0029 2.2754 6.9746 40 1 -0.3003 3.3611 5.7515 41 1 -2.5700 3.8553 4.8849 42 1 -3.2732 2.7697 6.1077 43 1 -5.3551 5.8007 6.3069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322732545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:04 Heat of formation + Delta-G solvation = -165.069073 kcal Electronic energy + Delta-G solvation = -27307.038321 eV Core-core repulsion = 23250.286150 eV Total energy + Delta-G solvation = -4056.752171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70248 -40.48303 -38.39486 -37.75972 -37.26447 -36.12318 -35.92413 -34.00804 -33.55658 -30.50927 -30.36290 -29.41179 -28.31810 -25.28021 -23.78803 -23.19713 -22.15926 -21.52336 -20.65689 -19.08473 -18.78178 -18.72580 -18.39551 -17.75539 -17.41855 -17.29429 -16.69915 -16.56001 -16.47218 -16.06055 -15.52057 -14.98303 -14.72359 -14.49934 -14.23368 -14.18883 -14.08610 -13.96201 -13.89899 -13.61864 -13.49965 -13.40208 -13.22155 -13.06099 -12.78376 -12.54689 -12.47588 -12.37925 -12.21587 -12.04757 -12.00616 -11.77698 -11.56268 -11.40962 -11.38952 -11.23282 -10.57076 -9.82474 -9.24012 -8.22302 -6.33668 -0.95856 0.28732 0.41489 1.19299 1.41337 1.42865 1.44294 1.52061 1.75033 2.41127 2.56709 2.80125 3.06424 3.11751 3.52862 3.73392 3.85473 3.87867 3.97972 4.01187 4.05855 4.06960 4.17942 4.33236 4.42746 4.49670 4.62395 4.70565 4.80408 4.83250 4.87331 5.01176 5.08382 5.12717 5.31211 5.44220 5.54799 5.55516 5.63203 5.63929 5.79930 5.80095 6.09985 6.19001 6.73312 6.82551 7.35941 8.89612 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002415 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.575950 B =11592.702037 C =12672.298561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.623 3.377 3 O -0.985 6.985 4 O -0.971 6.971 5 N -1.055 6.055 6 C 0.160 3.840 7 C -0.192 4.192 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.085 4.085 11 C -0.108 4.108 12 C -0.070 4.070 13 C 0.453 3.547 14 O -0.528 6.528 15 O -0.358 6.358 16 C 0.078 3.922 17 C -0.096 4.096 18 C 0.026 3.974 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.265 1.265 27 H 0.128 0.872 28 H 0.154 0.846 29 H 0.140 0.860 30 H 0.431 0.569 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.065 0.935 41 H -0.004 1.004 42 H -0.003 1.003 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.047 -21.057 -9.356 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.719 3.281 3 O -0.976 6.976 4 O -0.961 6.961 5 N -0.805 5.805 6 C 0.063 3.937 7 C -0.213 4.213 8 C -0.107 4.107 9 C -0.155 4.155 10 C -0.104 4.104 11 C -0.112 4.112 12 C -0.107 4.107 13 C 0.297 3.703 14 O -0.417 6.417 15 O -0.275 6.275 16 C 0.005 3.995 17 C -0.133 4.133 18 C -0.011 4.011 19 C -0.582 4.582 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.147 0.853 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.270 0.730 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.144 -20.782 -10.446 27.755 hybrid contribution -1.036 1.140 0.891 1.780 sum 14.108 -19.641 -9.555 26.002 Atomic orbital electron populations 1.30321 1.24217 1.13146 1.13052 1.04492 0.78519 0.72590 0.72466 1.93603 1.79583 1.38723 1.85660 1.93518 1.78483 1.61183 1.62884 1.53302 1.65974 1.22972 1.38286 1.17363 0.98444 0.83824 0.94032 1.22020 1.04613 0.93241 1.01406 1.21368 0.96115 0.96155 0.97058 1.21488 1.00645 1.00417 0.92936 1.21256 0.96395 0.91498 1.01231 1.19267 1.03813 0.95434 0.92667 1.20373 0.92611 0.95083 1.02610 1.24333 0.90266 0.78664 0.77037 1.90648 1.44192 1.67917 1.38908 1.86492 1.40735 1.42042 1.58235 1.23093 0.82787 0.93161 1.00498 1.21459 0.99224 0.94691 0.97945 1.18922 0.92077 0.94239 0.95839 1.21611 1.01986 1.14059 1.20574 0.91693 1.25994 0.95060 1.00660 0.98130 1.70087 1.06378 1.40123 1.40760 0.85468 0.77490 0.78654 0.79257 1.19130 1.20975 1.18975 0.85321 0.82784 0.84133 0.72974 0.82778 0.83215 0.83214 0.83597 0.85093 0.83461 0.91975 0.91852 0.91431 0.91588 0.98592 0.98499 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -10.63 10.71 113.37 1.21 -9.41 16 2 S 2.62 50.44 5.87 -56.49 -0.33 50.11 16 3 O -0.99 -25.78 18.08 -127.65 -2.31 -28.08 16 4 O -0.97 -22.06 15.05 -127.65 -1.92 -23.98 16 5 N -1.05 -17.91 5.39 -51.37 -0.28 -18.19 16 6 C 0.16 2.82 6.10 38.21 0.23 3.05 16 7 C -0.19 -3.32 9.25 22.40 0.21 -3.11 16 8 C -0.09 -1.21 10.04 22.25 0.22 -0.98 16 9 C -0.14 -1.68 10.04 22.29 0.22 -1.45 16 10 C -0.09 -1.18 9.68 22.25 0.22 -0.97 16 11 C -0.11 -1.75 4.39 -19.73 -0.09 -1.84 16 12 C -0.07 -1.03 5.62 29.10 0.16 -0.86 16 13 C 0.45 11.06 7.95 71.23 0.57 11.62 16 14 O -0.53 -15.51 15.78 21.96 0.35 -15.16 16 15 O -0.36 -10.29 10.22 -51.42 -0.53 -10.82 16 16 C 0.08 2.70 5.47 71.98 0.39 3.09 16 17 C -0.10 -3.81 5.53 30.59 0.17 -3.64 16 18 C 0.03 1.36 4.97 29.85 0.15 1.51 16 19 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 21 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 22 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 23 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 27 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.43 5.77 7.41 -96.75 -0.72 5.06 16 31 H 0.15 2.86 5.18 -2.91 -0.02 2.84 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.13 1.36 6.73 -2.39 -0.02 1.34 16 36 H 0.15 1.35 8.05 -2.39 -0.02 1.33 16 37 H 0.06 2.17 8.13 -2.38 -0.02 2.15 16 38 H 0.06 2.22 8.13 -2.39 -0.02 2.21 16 39 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -77.39 379.71 1.98 -75.41 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.32 Total: 13.85 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 4.37 Total: -32.72 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: 0.01 Total: -74.19 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: -4.41 Total: -78.04 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.33 Total: 50.11 kcal Total: -77.39 1.98 -75.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322732545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.661 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds