Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42098 * 108.58023 * 2 1 4 4 O 1.42105 * 108.57770 * 228.97015 * 2 1 3 5 5 C 1.81409 * 101.92074 * 114.48770 * 2 1 3 6 6 C 1.53003 * 109.47156 * 180.02562 * 5 2 1 7 7 H 1.08999 * 109.47209 * 59.99526 * 6 5 2 8 8 O 1.42897 * 109.46742 * 299.99592 * 6 5 2 9 9 C 1.52993 * 109.46828 * 180.02562 * 6 5 2 10 10 N 1.46509 * 109.47054 * 185.00104 * 9 6 5 11 11 C 1.34776 * 120.00067 * 179.97438 * 10 9 6 12 12 O 1.21280 * 119.99689 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99613 * 179.97438 * 11 10 9 14 14 H 1.08993 * 109.47185 * 321.81981 * 13 11 10 15 15 C 1.50699 * 109.46882 * 81.82437 * 13 11 10 16 16 H 1.07997 * 120.00594 * 54.38345 * 15 13 11 17 17 C 1.37880 * 119.99662 * 234.37537 * 15 13 11 18 18 N 1.31513 * 119.99787 * 172.37626 * 17 15 13 19 19 Si 1.86794 * 120.00092 * 352.38073 * 17 15 13 20 20 H 1.48501 * 109.47286 * 83.59700 * 19 17 15 21 21 H 1.48507 * 109.47306 * 203.59733 * 19 17 15 22 22 H 1.48504 * 109.47091 * 323.59601 * 19 17 15 23 23 C 1.50701 * 109.46739 * 201.82267 * 13 11 10 24 24 C 1.38236 * 119.99976 * 292.61651 * 23 13 11 25 25 C 1.38237 * 119.99867 * 179.78886 * 24 23 13 26 26 C 1.38232 * 120.00046 * 0.44188 * 25 24 23 27 27 C 1.38231 * 119.99915 * 359.81329 * 26 25 24 28 28 C 1.38231 * 120.00066 * 112.89240 * 23 13 11 29 29 H 1.09000 * 109.47075 * 305.51278 * 1 2 3 30 30 H 1.08999 * 109.46744 * 65.51306 * 1 2 3 31 31 H 1.09003 * 109.47400 * 185.51031 * 1 2 3 32 32 H 1.08998 * 109.46930 * 59.99811 * 5 2 1 33 33 H 1.08999 * 109.46544 * 299.99731 * 5 2 1 34 34 H 0.96700 * 114.00303 * 299.99967 * 8 6 5 35 35 H 1.09000 * 109.47030 * 304.99299 * 9 6 5 36 36 H 1.08998 * 109.47567 * 64.99876 * 9 6 5 37 37 H 0.96999 * 119.99753 * 359.97438 * 10 9 6 38 38 H 0.96999 * 120.00104 * 180.02562 * 18 17 15 39 39 H 1.08008 * 120.00086 * 359.97438 * 24 23 13 40 40 H 1.08002 * 119.99723 * 180.27340 * 25 24 23 41 41 H 1.07999 * 119.99868 * 179.83327 * 26 25 24 42 42 H 1.08002 * 119.99886 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.00080 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7055 -0.8185 1.7985 7 1 4.1328 0.1830 1.7474 8 8 4.2666 -1.6292 0.7642 9 6 4.0214 -1.4395 3.1606 10 7 5.4686 -1.4097 3.3871 11 6 5.9822 -1.9065 4.5298 12 8 5.2464 -2.3778 5.3708 13 6 7.4708 -1.8762 4.7624 14 1 7.9891 -2.0870 3.8270 15 6 7.8733 -0.5133 5.2637 16 1 7.3912 -0.0940 6.1344 17 6 8.8573 0.1985 4.6109 18 7 9.1049 1.4439 4.9532 19 14 9.8386 -0.6061 3.2401 20 1 9.0811 -0.5095 1.9665 21 1 11.1440 0.0866 3.0934 22 1 10.0709 -2.0351 3.5707 23 6 7.8403 -2.9177 5.7870 24 6 7.4264 -2.7748 7.0981 25 6 7.7616 -3.7324 8.0371 26 6 8.5185 -4.8282 7.6669 27 6 8.9369 -4.9684 6.3569 28 6 8.5980 -4.0130 5.4170 29 1 -0.3633 0.5970 0.8365 30 1 -0.3633 0.4260 -0.9352 31 1 -0.3634 -1.0229 0.0987 32 1 1.7610 -1.7370 1.6665 33 1 1.7610 -0.1170 2.4042 34 1 3.9311 -2.5360 0.7495 35 1 3.5194 -0.8718 3.9440 36 1 3.6720 -2.4718 3.1791 37 1 6.0570 -1.0324 2.7145 38 1 9.7969 1.9448 4.4937 39 1 6.8384 -1.9165 7.3883 40 1 7.4344 -3.6229 9.0605 41 1 8.7827 -5.5749 8.4010 42 1 9.5280 -5.8248 6.0675 43 1 8.9249 -4.1227 4.3935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363785330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -132.832222 kcal Electronic energy + Delta-G solvation = -27489.828847 eV Core-core repulsion = 23434.474571 eV Total energy + Delta-G solvation = -4055.354276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.47847 -38.40937 -37.51176 -37.18333 -36.19739 -33.83742 -33.62224 -31.71534 -31.49133 -30.14468 -29.94358 -28.14263 -26.44129 -23.55682 -22.25717 -21.85534 -21.01503 -19.39110 -19.12326 -17.56398 -17.13568 -16.84648 -16.69365 -16.34965 -16.09489 -15.76974 -15.60246 -15.07745 -14.66960 -14.32576 -14.11368 -13.92795 -13.65912 -13.59435 -13.51759 -12.99092 -12.86698 -12.73413 -12.61079 -12.26186 -12.19947 -12.17482 -12.05640 -11.76753 -11.65551 -11.24997 -11.16574 -11.13453 -11.03522 -10.49910 -10.37108 -10.14107 -10.01130 -9.54736 -9.08610 -8.69824 -8.53842 -8.15018 -7.83881 -6.31993 -4.34625 -0.35154 2.12571 2.19684 2.44311 3.13814 3.24262 3.25319 3.26916 3.56735 3.63900 3.75859 4.06088 4.20697 4.32013 4.32107 4.39780 4.61738 4.63982 4.70864 5.03225 5.06892 5.15168 5.23017 5.53218 5.57085 5.65915 5.72493 5.78715 5.96122 6.10766 6.18364 6.34271 6.39589 6.72067 6.84506 6.97458 7.15454 7.24283 7.27642 7.34961 7.58336 7.77884 8.11452 8.28474 8.71153 9.05667 9.25689 10.79216 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003033 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.525159 B = 9229.646832 C =10276.900877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.433 3.567 3 O -0.935 6.935 4 O -0.923 6.923 5 C -0.652 4.652 6 C 0.106 3.894 7 H 0.126 0.874 8 O -0.545 6.545 9 C 0.101 3.899 10 N -0.731 5.731 11 C 0.533 3.467 12 O -0.561 6.561 13 C 0.034 3.966 14 H 0.060 0.940 15 C -0.509 4.509 16 H 0.083 0.917 17 C 0.083 3.917 18 N -0.879 5.879 19 Si 0.865 3.135 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.032 4.032 24 C -0.069 4.069 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.131 4.131 28 C -0.133 4.133 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.382 0.618 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.405 0.595 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 -6.779 -7.187 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.613 3.387 3 O -0.932 6.932 4 O -0.921 6.921 5 C -0.780 4.780 6 C 0.045 3.955 7 H 0.143 0.857 8 O -0.351 6.351 9 C -0.025 4.025 10 N -0.384 5.384 11 C 0.323 3.677 12 O -0.439 6.439 13 C 0.012 3.988 14 H 0.078 0.922 15 C -0.546 4.546 16 H 0.101 0.899 17 C -0.122 4.122 18 N -0.514 5.514 19 Si 0.691 3.309 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.033 4.033 24 C -0.088 4.088 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.151 4.151 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.392 -6.082 -7.405 17.290 hybrid contribution -0.168 -0.775 -0.119 0.802 sum -14.560 -6.857 -7.524 17.766 Atomic orbital electron populations 1.30365 1.27603 1.11420 1.11757 1.07632 0.77761 0.75924 0.77372 1.93620 1.78851 1.34504 1.86237 1.93611 1.78404 1.66846 1.53196 1.31118 1.06718 1.15019 1.25171 1.21861 0.87572 0.97596 0.88492 0.85671 1.86735 1.68871 1.27090 1.52436 1.21787 0.84177 1.01067 0.95501 1.45870 1.06342 1.64615 1.21577 1.21525 0.92262 0.74253 0.79675 1.90566 1.62261 1.46942 1.44170 1.18322 0.88904 0.96313 0.95255 0.92158 1.20519 1.21858 0.96950 1.15269 0.89857 1.25048 0.96260 0.94332 0.96544 1.69861 1.31638 1.08352 1.41537 0.87012 0.80645 0.80667 0.82556 1.19371 1.20872 1.18452 1.19998 0.94956 0.92866 0.95463 1.20925 0.97504 0.97899 0.92423 1.21056 0.99706 0.95231 0.99009 1.20879 1.00644 0.98506 0.95999 1.20887 1.01317 0.99021 0.93704 1.21015 1.00404 0.94689 0.99039 0.85402 0.85297 0.85457 0.84377 0.83613 0.76907 0.90712 0.91454 0.76019 0.91984 0.86160 0.87110 0.87337 0.87242 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.46 10.62 101.05 1.07 -1.39 16 2 S 2.43 18.78 5.25 -107.50 -0.56 18.22 16 3 O -0.93 -11.51 18.10 -57.83 -1.05 -12.55 16 4 O -0.92 -10.55 17.12 -63.76 -1.09 -11.64 16 5 C -0.65 -4.06 5.51 37.16 0.20 -3.85 16 6 C 0.11 1.13 3.05 -26.73 -0.08 1.05 16 7 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 8 O -0.55 -6.28 12.08 -48.26 -0.58 -6.87 16 9 C 0.10 1.34 5.31 -4.04 -0.02 1.31 16 10 N -0.73 -12.84 5.50 -60.29 -0.33 -13.18 16 11 C 0.53 11.40 6.94 -10.99 -0.08 11.33 16 12 O -0.56 -12.99 15.20 5.56 0.08 -12.90 16 13 C 0.03 0.77 2.20 -94.08 -0.21 0.56 16 14 H 0.06 1.32 4.73 -51.93 -0.25 1.07 16 15 C -0.51 -13.30 8.24 -34.44 -0.28 -13.58 16 16 H 0.08 2.42 7.72 -52.49 -0.40 2.02 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.88 -24.99 13.96 55.43 0.77 -24.22 16 19 Si 0.87 19.70 26.84 -169.99 -4.56 15.14 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -5.72 6.96 56.52 0.39 -5.32 16 23 C -0.03 -0.70 4.52 -104.62 -0.47 -1.18 16 24 C -0.07 -1.50 8.04 -39.58 -0.32 -1.82 16 25 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.14 -2.42 10.05 -39.59 -0.40 -2.82 16 27 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 28 C -0.13 -2.65 9.67 -39.58 -0.38 -3.03 16 29 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.15 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.38 3.01 9.04 45.56 0.41 3.42 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.40 6.97 8.47 -40.82 -0.35 6.63 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.12 2.73 7.47 -52.48 -0.39 2.34 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 2.02 7.96 -52.49 -0.42 1.60 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -37.92 377.94 -8.67 -46.58 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.19 Total: 12.56 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -1.86 Total: -16.83 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.44 Total: -37.40 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.64 Total: -43.97 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.56 Total: 15.14 kcal Atomic # 16 Polarization: 18.78 SS G_CDS: -0.56 Total: 18.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.92 -8.67 -46.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363785330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.247 kcal (2) G-P(sol) polarization free energy of solvation -37.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds