Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42106 * 108.57779 * 2 1 4 4 O 1.42102 * 108.58078 * 131.02423 * 2 1 3 5 5 C 1.81402 * 101.92082 * 245.51510 * 2 1 3 6 6 C 1.53005 * 109.46991 * 180.02562 * 5 2 1 7 7 H 1.09001 * 109.46752 * 304.99572 * 6 5 2 8 8 O 1.42898 * 109.47135 * 64.99562 * 6 5 2 9 9 C 1.53000 * 109.46947 * 184.99785 * 6 5 2 10 10 N 1.46497 * 109.46944 * 179.97438 * 9 6 5 11 11 C 1.34781 * 120.00165 * 179.97438 * 10 9 6 12 12 O 1.21277 * 119.99628 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00354 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47129 * 59.99853 * 13 11 10 15 15 C 1.50708 * 109.47072 * 300.00474 * 13 11 10 16 16 H 1.08003 * 119.99674 * 324.87599 * 15 13 11 17 17 C 1.37874 * 120.00160 * 144.88029 * 15 13 11 18 18 N 1.31519 * 120.00252 * 5.19386 * 17 15 13 19 19 Si 1.86800 * 119.99979 * 185.19227 * 17 15 13 20 20 H 1.48498 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46957 * 120.00014 * 19 17 15 22 22 H 1.48501 * 109.47105 * 240.00109 * 19 17 15 23 23 C 1.50701 * 109.47483 * 180.02562 * 13 11 10 24 24 C 1.38232 * 119.99465 * 66.01285 * 23 13 11 25 25 C 1.38240 * 119.99813 * 179.81574 * 24 23 13 26 26 C 1.38236 * 119.99635 * 0.39206 * 25 24 23 27 27 C 1.38232 * 120.00070 * 359.85874 * 26 25 24 28 28 C 1.38230 * 120.00414 * 359.95485 * 27 26 25 29 29 H 1.09002 * 109.47462 * 54.48880 * 1 2 3 30 30 H 1.09002 * 109.47340 * 174.48502 * 1 2 3 31 31 H 1.09007 * 109.47409 * 294.48993 * 1 2 3 32 32 H 1.09000 * 109.47072 * 299.99434 * 5 2 1 33 33 H 1.08992 * 109.47503 * 60.00032 * 5 2 1 34 34 H 0.96701 * 113.99898 * 60.00215 * 8 6 5 35 35 H 1.08992 * 109.47215 * 299.99727 * 9 6 5 36 36 H 1.09006 * 109.47094 * 59.99990 * 9 6 5 37 37 H 0.97005 * 120.00472 * 0.02562 * 10 9 6 38 38 H 0.96994 * 120.00537 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00277 * 359.97438 * 24 23 13 40 40 H 1.07999 * 120.00273 * 180.23183 * 25 24 23 41 41 H 1.08001 * 120.00307 * 179.84151 * 26 25 24 42 42 H 1.08001 * 120.00174 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.00676 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1886 -0.7356 -1.6153 6 6 3.7054 -0.8195 -1.7980 7 1 4.1434 0.1689 -1.6584 8 8 4.2519 -1.7230 -0.8351 9 6 4.0222 -1.3233 -3.2075 10 7 5.4745 -1.4031 -3.3826 11 6 5.9899 -1.8255 -4.5541 12 8 5.2513 -2.1390 -5.4635 13 6 7.4838 -1.9080 -4.7341 14 1 7.9007 -2.5969 -3.9994 15 6 8.0893 -0.5415 -4.5415 16 1 7.5526 0.3376 -4.8667 17 6 9.3282 -0.4134 -3.9503 18 7 10.0263 -1.4861 -3.6474 19 14 10.0153 1.2836 -3.5795 20 1 9.0417 2.3174 -4.0135 21 1 10.2555 1.4122 -2.1198 22 1 11.2947 1.4700 -4.3100 23 6 7.7959 -2.4042 -6.1225 24 6 7.4759 -1.6292 -7.2215 25 6 7.7656 -2.0825 -8.4949 26 6 8.3680 -3.3144 -8.6695 27 6 8.6833 -4.0916 -7.5707 28 6 8.3970 -3.6366 -6.2972 29 1 -0.3634 0.5969 -0.8365 30 1 -0.3634 -1.0229 -0.0988 31 1 -0.3634 0.4260 0.9353 32 1 1.7610 -1.7369 -1.6665 33 1 1.7610 -0.1171 -2.4043 34 1 3.9064 -2.6238 -0.9005 35 1 3.5843 -2.3116 -3.3470 36 1 3.6054 -0.6341 -3.9419 37 1 6.0653 -1.1526 -2.6551 38 1 10.8978 -1.3961 -3.2311 39 1 7.0018 -0.6684 -7.0852 40 1 7.5190 -1.4754 -9.3534 41 1 8.5921 -3.6698 -9.6644 42 1 9.1535 -5.0543 -7.7071 43 1 8.6430 -4.2440 -5.4387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363785333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -166.001727 kcal Electronic energy + Delta-G solvation = -27422.052845 eV Core-core repulsion = 23365.260231 eV Total energy + Delta-G solvation = -4056.792614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91026 -39.56934 -38.68230 -37.91557 -36.92125 -35.51824 -35.07297 -32.92156 -32.42643 -31.53046 -30.33103 -29.39068 -27.47502 -25.59444 -23.24583 -23.12696 -22.38642 -20.92835 -19.78871 -18.72299 -18.43151 -17.75192 -17.59777 -17.45110 -17.19586 -16.58000 -16.50061 -16.36971 -16.15216 -15.81328 -15.44010 -15.17579 -14.92692 -14.39495 -14.10621 -13.94933 -13.90779 -13.87345 -13.75604 -13.39116 -13.30018 -13.12472 -12.99629 -12.93312 -12.84440 -12.75432 -12.47067 -12.19374 -11.93638 -11.89378 -11.76315 -11.67952 -11.26737 -11.12228 -10.69944 -10.43543 -9.90992 -9.55337 -9.25234 -8.22123 -6.33654 -0.89914 0.76210 0.81087 1.40482 1.44225 1.53653 1.93576 1.94055 2.37976 2.42623 2.86831 3.07707 3.12662 3.27182 3.38241 3.57538 3.69234 3.87340 4.14441 4.20223 4.22851 4.30681 4.37303 4.39890 4.47806 4.54677 4.66303 4.75904 4.86494 4.90255 4.98227 5.00974 5.11146 5.37272 5.45311 5.63691 5.65443 5.79042 5.83502 5.94966 6.23954 6.40958 6.67298 6.70667 6.77697 7.33857 7.52434 8.86108 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003001 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.230169 B = 9328.361120 C =10682.187158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.426 3.574 3 O -0.993 6.993 4 O -0.974 6.974 5 C -0.638 4.638 6 C 0.106 3.894 7 H 0.107 0.893 8 O -0.564 6.564 9 C 0.096 3.904 10 N -0.719 5.719 11 C 0.527 3.473 12 O -0.591 6.591 13 C 0.051 3.949 14 H 0.064 0.936 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.034 3.966 18 N -0.905 5.905 19 Si 0.952 3.048 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.284 1.284 23 C -0.037 4.037 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.143 4.143 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.135 0.865 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.395 0.605 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.410 0.590 38 H 0.267 0.733 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -0.945 2.523 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.613 3.387 3 O -0.990 6.990 4 O -0.971 6.971 5 C -0.768 4.768 6 C 0.046 3.954 7 H 0.125 0.875 8 O -0.372 6.372 9 C -0.029 4.029 10 N -0.370 5.370 11 C 0.316 3.684 12 O -0.473 6.473 13 C 0.029 3.971 14 H 0.082 0.918 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.168 4.168 18 N -0.541 5.541 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.210 1.210 23 C -0.038 4.038 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.161 4.161 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.153 0.847 32 H 0.194 0.806 33 H 0.193 0.807 34 H 0.246 0.754 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.072 -0.394 2.848 18.299 hybrid contribution 0.237 0.308 -0.029 0.390 sum -17.835 -0.086 2.819 18.057 Atomic orbital electron populations 1.30112 1.21362 1.14082 1.13348 1.07366 0.79943 0.74143 0.77227 1.93548 1.81364 1.37043 1.87090 1.93559 1.80783 1.67325 1.55423 1.30982 1.03444 1.17797 1.24547 1.21741 0.90722 0.95194 0.87784 0.87485 1.86722 1.69858 1.24930 1.55680 1.22054 0.81462 1.02561 0.96831 1.45794 1.07680 1.67809 1.15755 1.21331 0.91779 0.73972 0.81308 1.90538 1.62793 1.51744 1.42188 1.18010 0.88040 0.98631 0.92385 0.91763 1.20798 1.03414 0.90517 1.40728 0.92806 1.25590 0.96766 0.99937 0.94522 1.70018 1.12760 1.29833 1.41527 0.85587 0.78203 0.80365 0.78060 1.19189 1.20058 1.20987 1.20113 0.94811 0.92857 0.95978 1.20852 1.00082 0.99010 0.93041 1.21329 1.00050 0.97313 0.96562 1.21273 1.00749 0.94782 0.99355 1.21301 1.00643 1.00656 0.92133 1.21134 1.01152 0.96110 0.97723 0.82817 0.82538 0.84676 0.80650 0.80712 0.75397 0.90306 0.90663 0.75479 0.92406 0.88644 0.84591 0.83502 0.84272 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.21 10.62 113.37 1.20 -1.01 16 2 S 2.43 34.81 5.29 -56.49 -0.30 34.51 16 3 O -0.99 -24.44 18.10 -127.37 -2.31 -26.74 16 4 O -0.97 -22.85 17.31 -122.95 -2.13 -24.98 16 5 C -0.64 -6.29 5.47 71.98 0.39 -5.90 16 6 C 0.11 2.22 3.05 30.60 0.09 2.32 16 7 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 8 O -0.56 -13.46 12.17 -141.20 -1.72 -15.18 16 9 C 0.10 2.49 5.34 86.38 0.46 2.95 16 10 N -0.72 -26.19 5.35 -463.07 -2.48 -28.66 16 11 C 0.53 23.65 7.04 87.65 0.62 24.27 16 12 O -0.59 -28.37 15.42 -3.02 -0.05 -28.41 16 13 C 0.05 2.50 2.38 -13.03 -0.03 2.47 16 14 H 0.06 3.44 7.13 -2.39 -0.02 3.42 16 15 C -0.52 -26.83 7.47 25.60 0.19 -26.64 16 16 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 17 C 0.03 1.77 5.45 84.65 0.46 2.23 16 18 N -0.90 -49.60 12.84 21.45 0.28 -49.33 16 19 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C -0.04 -1.77 4.30 -19.87 -0.09 -1.86 16 24 C -0.11 -5.10 8.30 22.27 0.18 -4.91 16 25 C -0.13 -5.10 10.05 22.27 0.22 -4.88 16 26 C -0.14 -4.94 10.05 22.27 0.22 -4.72 16 27 C -0.13 -4.80 10.05 22.27 0.22 -4.57 16 28 C -0.14 -6.38 9.67 22.27 0.22 -6.16 16 29 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.16 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.18 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.18 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.40 6.39 9.05 -74.06 -0.67 5.72 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 37 H 0.41 15.26 8.23 -92.70 -0.76 14.49 16 38 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.10 4.50 7.89 -2.91 -0.02 4.47 16 40 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 41 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.11 4.67 7.96 -2.91 -0.02 4.65 16 Total: -1.00 -84.04 382.26 -2.69 -86.72 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.39 Total: 34.28 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.38 Total: -26.40 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -2.20 Total: -77.99 kcal Atomic # 8 Polarization: -89.12 SS G_CDS: -6.20 Total: -95.31 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 34.81 SS G_CDS: -0.30 Total: 34.51 kcal Total: -84.04 -2.69 -86.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363785333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.277 kcal (2) G-P(sol) polarization free energy of solvation -84.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds