Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 117.00085 * 2 1 4 4 C 1.38755 * 120.05587 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94570 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05408 * 359.74795 * 5 4 3 7 7 C 1.38243 * 120.11300 * 0.50748 * 6 5 4 8 8 S 1.76199 * 119.97382 * 179.76500 * 7 6 5 9 9 O 1.42102 * 104.27602 * 153.65456 * 8 7 6 10 10 O 1.42094 * 104.27878 * 25.79373 * 8 7 6 11 11 C 1.81404 * 104.44982 * 269.72239 * 8 7 6 12 12 C 1.52997 * 109.47086 * 179.97438 * 11 8 7 13 13 N 1.46896 * 109.47112 * 180.02562 * 12 11 8 14 14 C 1.47962 * 111.00206 * 170.00029 * 13 12 11 15 15 C 1.53933 * 86.18036 * 137.57868 * 14 13 12 16 16 O 1.42903 * 113.73455 * 90.64263 * 15 14 13 17 17 C 1.50702 * 113.73325 * 221.81483 * 15 14 13 18 18 H 1.07996 * 120.00082 * 358.09933 * 17 15 14 19 19 C 1.37882 * 119.99818 * 178.10181 * 17 15 14 20 20 N 1.31513 * 119.99991 * 179.97438 * 19 17 15 21 21 Si 1.86800 * 120.00259 * 0.02562 * 19 17 15 22 22 H 1.48496 * 109.47207 * 89.99694 * 21 19 17 23 23 H 1.48499 * 109.47265 * 210.00042 * 21 19 17 24 24 H 1.48505 * 109.46693 * 330.00032 * 21 19 17 25 25 C 1.48304 * 111.00332 * 269.35041 * 13 12 11 26 26 C 1.38167 * 120.05270 * 359.49222 * 7 6 5 27 27 H 1.09002 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47417 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47473 * 60.00153 * 1 2 3 30 30 H 1.08005 * 120.02306 * 359.96111 * 4 3 2 31 31 H 1.08001 * 119.97410 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.94261 * 180.27484 * 6 5 4 33 33 H 1.09003 * 109.46763 * 60.00335 * 11 8 7 34 34 H 1.09001 * 109.47254 * 300.00271 * 11 8 7 35 35 H 1.08991 * 109.47191 * 60.00129 * 12 11 8 36 36 H 1.09001 * 109.47318 * 300.00260 * 12 11 8 37 37 H 1.08997 * 113.75944 * 23.26083 * 14 13 12 38 38 H 1.09001 * 113.85960 * 251.90728 * 14 13 12 39 39 H 0.96700 * 114.00311 * 181.89938 * 16 15 14 40 40 H 0.96996 * 120.00295 * 179.97438 * 20 19 17 41 41 H 1.09004 * 113.85839 * 108.14487 * 25 13 12 42 42 H 1.09000 * 113.75896 * 336.68350 * 25 13 12 43 43 H 1.08005 * 120.02902 * 180.23026 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0063 7 6 4.0560 2.5171 0.0005 8 16 5.8154 2.6118 0.0010 9 8 6.2317 1.3953 0.6060 10 8 6.0987 3.8657 0.6065 11 6 6.2679 2.6366 -1.7556 12 6 7.7898 2.7192 -1.8891 13 7 8.1561 2.7399 -3.3114 14 6 9.5907 3.0580 -3.4850 15 6 9.6014 1.9500 -4.5535 16 8 9.3133 2.4197 -5.8720 17 6 10.8206 1.0659 -4.4983 18 1 11.5975 1.2621 -3.7743 19 6 10.9441 0.0066 -5.3723 20 7 12.0083 -0.7646 -5.3245 21 14 9.6007 -0.3322 -6.6251 22 1 9.8917 0.4121 -7.8767 23 1 9.5500 -1.7877 -6.9153 24 1 8.2921 0.1096 -6.0794 25 6 8.3789 1.3658 -3.8230 26 6 3.4311 1.2848 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2127 2.3202 0.0003 31 1 1.3339 4.5113 0.0019 32 1 3.7922 4.6380 0.0112 33 1 5.8138 3.5035 -2.2355 34 1 5.9095 1.7261 -2.2359 35 1 8.2442 1.8526 -1.4090 36 1 8.1477 3.6299 -1.4088 37 1 10.1999 2.8305 -2.6103 38 1 9.7760 4.0551 -3.8845 39 1 9.2904 1.7224 -6.5417 40 1 12.0951 -1.5100 -5.9390 41 1 7.5949 1.0121 -4.4926 42 1 8.6345 0.6443 -3.0469 43 1 4.0206 0.3798 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364393095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -68.164473 kcal Electronic energy + Delta-G solvation = -27269.246625 eV Core-core repulsion = 23216.696553 eV Total energy + Delta-G solvation = -4052.550072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55100 -39.44480 -37.87200 -37.18788 -36.03251 -35.22508 -32.48305 -32.12773 -31.79825 -30.71607 -27.79217 -27.51958 -25.49470 -24.75727 -23.52542 -22.89328 -21.39471 -19.50655 -19.19047 -18.53087 -17.38244 -16.87306 -16.66602 -16.58094 -16.26897 -16.23190 -16.08711 -15.77882 -15.17954 -14.82946 -14.34678 -14.08911 -14.05927 -13.57012 -13.32659 -13.26548 -13.00291 -12.80588 -12.44361 -12.41979 -12.15609 -12.14187 -12.05299 -11.75341 -11.68090 -11.66741 -11.46627 -11.11815 -11.00713 -10.64169 -10.53612 -10.45001 -10.00089 -9.78333 -9.34811 -8.92086 -8.74056 -8.67602 -8.15234 -6.34973 -4.39884 -0.12734 0.42458 0.93018 2.65157 2.84103 3.04445 3.04822 3.10972 3.19871 3.71569 4.03965 4.10903 4.26045 4.40024 4.43802 4.57998 4.60609 4.66443 4.71224 4.73441 4.87129 4.92887 5.01246 5.04270 5.32325 5.37151 5.41657 5.49458 5.62222 5.64138 5.76191 5.80073 5.82127 5.93000 6.10956 6.13300 6.38066 6.54500 6.80356 6.82308 6.87873 7.29825 7.57748 8.12429 8.64505 8.67893 9.23849 10.77518 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002747 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.374948 B =10189.815671 C =11081.115883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.107 3.893 4 C -0.159 4.159 5 C -0.100 4.100 6 C -0.061 4.061 7 C -0.618 4.618 8 S 2.493 3.507 9 O -0.933 6.933 10 O -0.935 6.935 11 C -0.586 4.586 12 C 0.024 3.976 13 N -0.470 5.470 14 C 0.022 3.978 15 C 0.202 3.798 16 O -0.552 6.552 17 C -0.538 4.538 18 H 0.087 0.913 19 C 0.078 3.922 20 N -0.881 5.881 21 Si 0.859 3.141 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.252 1.252 25 C -0.037 4.037 26 C -0.055 4.055 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.349 0.651 40 H 0.269 0.731 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.886 5.361 9.985 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.061 3.939 4 C -0.177 4.177 5 C -0.119 4.119 6 C -0.080 4.080 7 C -0.704 4.704 8 S 2.673 3.327 9 O -0.930 6.930 10 O -0.932 6.932 11 C -0.717 4.717 12 C -0.107 4.107 13 N -0.193 5.193 14 C -0.106 4.106 15 C 0.161 3.839 16 O -0.362 6.362 17 C -0.576 4.576 18 H 0.105 0.895 19 C -0.127 4.127 20 N -0.517 5.517 21 Si 0.687 3.313 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.177 1.177 25 C -0.166 4.166 26 C -0.074 4.074 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.200 0.800 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.743 6.011 10.681 26.720 hybrid contribution -1.197 -1.319 -1.114 2.101 sum -24.940 4.692 9.567 27.121 Atomic orbital electron populations 1.23118 0.78089 1.04419 1.01354 1.86124 1.21582 1.26251 1.88684 1.19048 0.92355 0.84607 0.97884 1.21564 1.00460 0.92529 1.03187 1.21101 0.94586 0.97417 0.98812 1.20926 0.94199 0.97393 0.95529 1.30623 1.26423 0.98426 1.14890 1.05653 0.73876 0.74895 0.78300 1.93589 1.80057 1.45769 1.73556 1.93568 1.82881 1.43139 1.73585 1.30228 1.06637 1.12732 1.22150 1.22366 0.90290 1.02655 0.95354 1.68636 1.20223 1.18654 1.11762 1.24052 0.87593 1.00743 0.98226 1.20434 0.91571 0.91343 0.80573 1.86452 1.93975 1.37817 1.17943 1.21386 1.04681 1.11223 1.20300 0.89530 1.25017 0.95362 0.95490 0.96814 1.69870 1.27236 1.17293 1.37298 0.87327 0.83349 0.78128 0.82495 1.19469 1.21197 1.17737 1.25306 1.00697 0.90297 1.00302 1.20217 0.92122 0.97394 0.97653 0.87835 0.92540 0.92485 0.84710 0.84626 0.83674 0.83931 0.84573 0.92001 0.89696 0.90366 0.89633 0.79966 0.92057 0.90491 0.90288 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.02 10.50 -19.41 -0.20 -3.23 16 3 C 0.11 1.10 6.69 -39.22 -0.26 0.84 16 4 C -0.16 -1.29 9.04 -39.43 -0.36 -1.65 16 5 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 6 C -0.06 -0.59 9.47 -39.56 -0.37 -0.97 16 7 C -0.62 -6.84 5.66 -39.61 -0.22 -7.07 16 8 S 2.49 30.52 5.16 -107.50 -0.55 29.97 16 9 O -0.93 -14.18 17.12 -57.54 -0.99 -15.17 16 10 O -0.93 -13.30 17.11 -57.54 -0.98 -14.29 16 11 C -0.59 -6.96 6.29 37.16 0.23 -6.72 16 12 C 0.02 0.36 4.80 -3.83 -0.02 0.34 16 13 N -0.47 -8.74 6.17 -237.94 -1.47 -10.21 16 14 C 0.02 0.45 7.34 -2.76 -0.02 0.43 16 15 C 0.20 4.71 1.05 -90.84 -0.10 4.62 16 16 O -0.55 -13.29 13.35 -35.23 -0.47 -13.76 16 17 C -0.54 -14.45 9.19 -34.44 -0.32 -14.76 16 18 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.88 -25.51 13.96 55.43 0.77 -24.74 16 21 Si 0.86 19.62 24.31 -169.99 -4.13 15.49 16 22 H -0.27 -5.95 7.05 56.52 0.40 -5.55 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.25 -5.43 5.15 56.52 0.29 -5.14 16 25 C -0.04 -0.77 6.45 -2.57 -0.02 -0.78 16 26 C -0.05 -0.62 9.41 -39.43 -0.37 -0.99 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 30 H 0.14 0.70 6.30 -52.48 -0.33 0.37 16 31 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.15 1.18 7.56 -52.48 -0.40 0.78 16 33 H 0.14 1.43 8.14 -51.92 -0.42 1.00 16 34 H 0.14 1.49 8.14 -51.92 -0.42 1.06 16 35 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 36 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.08 1.48 7.87 -51.93 -0.41 1.07 16 38 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 39 H 0.35 8.07 3.57 45.56 0.16 8.23 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.08 1.57 6.82 -51.93 -0.35 1.22 16 42 H 0.08 1.60 7.43 -51.93 -0.39 1.22 16 43 H 0.15 1.66 7.57 -52.48 -0.40 1.26 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -35.09 362.60 -9.38 -44.47 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.50 Total: 10.76 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -1.33 Total: -24.77 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.69 Total: -34.95 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -2.64 Total: -46.44 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.13 Total: 15.49 kcal Atomic # 16 Polarization: 30.52 SS G_CDS: -0.55 Total: 29.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.09 -9.38 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364393095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.691 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds