Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 117.00085 * 2 1 4 4 C 1.38755 * 120.05587 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94570 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05408 * 359.74795 * 5 4 3 7 7 C 1.38243 * 120.11300 * 0.50748 * 6 5 4 8 8 S 1.76199 * 119.97382 * 179.76500 * 7 6 5 9 9 O 1.42102 * 104.27602 * 153.65456 * 8 7 6 10 10 O 1.42094 * 104.27878 * 25.79373 * 8 7 6 11 11 C 1.81404 * 104.44982 * 269.72239 * 8 7 6 12 12 C 1.52997 * 109.47086 * 179.97438 * 11 8 7 13 13 N 1.46896 * 109.47112 * 180.02562 * 12 11 8 14 14 C 1.47962 * 111.00206 * 170.00029 * 13 12 11 15 15 C 1.53933 * 86.18036 * 137.57868 * 14 13 12 16 16 O 1.42903 * 113.73455 * 90.64263 * 15 14 13 17 17 C 1.50702 * 113.73325 * 221.81483 * 15 14 13 18 18 H 1.07996 * 120.00082 * 358.09933 * 17 15 14 19 19 C 1.37882 * 119.99818 * 178.10181 * 17 15 14 20 20 N 1.31513 * 119.99991 * 179.97438 * 19 17 15 21 21 Si 1.86800 * 120.00259 * 0.02562 * 19 17 15 22 22 H 1.48496 * 109.47207 * 89.99694 * 21 19 17 23 23 H 1.48499 * 109.47265 * 210.00042 * 21 19 17 24 24 H 1.48505 * 109.46693 * 330.00032 * 21 19 17 25 25 C 1.48304 * 111.00332 * 269.35041 * 13 12 11 26 26 C 1.38167 * 120.05270 * 359.49222 * 7 6 5 27 27 H 1.09002 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47417 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47473 * 60.00153 * 1 2 3 30 30 H 1.08005 * 120.02306 * 359.96111 * 4 3 2 31 31 H 1.08001 * 119.97410 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.94261 * 180.27484 * 6 5 4 33 33 H 1.09003 * 109.46763 * 60.00335 * 11 8 7 34 34 H 1.09001 * 109.47254 * 300.00271 * 11 8 7 35 35 H 1.08991 * 109.47191 * 60.00129 * 12 11 8 36 36 H 1.09001 * 109.47318 * 300.00260 * 12 11 8 37 37 H 1.08997 * 113.75944 * 23.26083 * 14 13 12 38 38 H 1.09001 * 113.85960 * 251.90728 * 14 13 12 39 39 H 0.96700 * 114.00311 * 181.89938 * 16 15 14 40 40 H 0.96996 * 120.00295 * 179.97438 * 20 19 17 41 41 H 1.09004 * 113.85839 * 108.14487 * 25 13 12 42 42 H 1.09000 * 113.75896 * 336.68350 * 25 13 12 43 43 H 1.08005 * 120.02902 * 180.23026 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0063 7 6 4.0560 2.5171 0.0005 8 16 5.8154 2.6118 0.0010 9 8 6.2317 1.3953 0.6060 10 8 6.0987 3.8657 0.6065 11 6 6.2679 2.6366 -1.7556 12 6 7.7898 2.7192 -1.8891 13 7 8.1561 2.7399 -3.3114 14 6 9.5907 3.0580 -3.4850 15 6 9.6014 1.9500 -4.5535 16 8 9.3133 2.4197 -5.8720 17 6 10.8206 1.0659 -4.4983 18 1 11.5975 1.2621 -3.7743 19 6 10.9441 0.0066 -5.3723 20 7 12.0083 -0.7646 -5.3245 21 14 9.6007 -0.3322 -6.6251 22 1 9.8917 0.4121 -7.8767 23 1 9.5500 -1.7877 -6.9153 24 1 8.2921 0.1096 -6.0794 25 6 8.3789 1.3658 -3.8230 26 6 3.4311 1.2848 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2127 2.3202 0.0003 31 1 1.3339 4.5113 0.0019 32 1 3.7922 4.6380 0.0112 33 1 5.8138 3.5035 -2.2355 34 1 5.9095 1.7261 -2.2359 35 1 8.2442 1.8526 -1.4090 36 1 8.1477 3.6299 -1.4088 37 1 10.1999 2.8305 -2.6103 38 1 9.7760 4.0551 -3.8845 39 1 9.2904 1.7224 -6.5417 40 1 12.0951 -1.5100 -5.9390 41 1 7.5949 1.0121 -4.4926 42 1 8.6345 0.6443 -3.0469 43 1 4.0206 0.3798 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364393095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -98.863510 kcal Electronic energy + Delta-G solvation = -27270.577835 eV Core-core repulsion = 23216.696553 eV Total energy + Delta-G solvation = -4053.881282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18845 -41.07350 -38.52208 -38.24225 -37.10757 -36.91783 -34.53888 -33.45774 -32.48161 -31.37164 -29.28208 -28.24103 -27.12271 -26.34492 -24.29868 -23.59822 -22.75084 -20.92676 -20.29221 -19.49583 -19.27351 -18.10433 -17.71657 -17.57857 -17.27649 -17.02009 -16.85094 -16.76128 -16.63050 -16.17138 -15.59216 -15.19702 -14.97278 -14.93327 -14.68699 -14.62048 -13.94990 -13.87016 -13.84477 -13.63331 -13.26342 -13.22941 -13.17282 -12.88964 -12.83409 -12.75716 -12.44563 -12.38249 -12.22345 -12.07515 -11.94525 -11.81429 -11.60871 -11.14026 -10.90394 -10.49787 -10.44121 -9.77292 -9.41942 -8.43815 -6.54675 -1.07401 -0.31338 0.24366 1.22919 1.28728 1.38333 1.78792 2.17700 2.25125 2.31667 2.73618 2.79980 3.00167 3.12409 3.43571 3.60009 3.65918 3.78272 3.88855 3.98489 4.05965 4.08253 4.12105 4.24549 4.31946 4.36065 4.37135 4.41833 4.57986 4.68652 4.75857 4.77125 4.82649 4.90077 4.94369 5.10611 5.12021 5.18650 5.27265 5.32486 5.50585 6.00874 6.08398 6.28968 6.51351 6.77846 7.13484 8.72088 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002747 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.374948 B =10189.815671 C =11081.115883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.337 6.337 3 C 0.095 3.905 4 C -0.152 4.152 5 C -0.096 4.096 6 C -0.073 4.073 7 C -0.622 4.622 8 S 2.511 3.489 9 O -0.970 6.970 10 O -0.957 6.957 11 C -0.578 4.578 12 C 0.010 3.990 13 N -0.461 5.461 14 C 0.023 3.977 15 C 0.183 3.817 16 O -0.556 6.556 17 C -0.548 4.548 18 H 0.048 0.952 19 C 0.021 3.979 20 N -0.930 5.930 21 Si 0.921 3.079 22 H -0.254 1.254 23 H -0.285 1.285 24 H -0.229 1.229 25 C -0.031 4.031 26 C -0.083 4.083 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.352 0.648 40 H 0.272 0.728 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.858 6.740 9.510 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.251 6.251 3 C 0.049 3.951 4 C -0.170 4.170 5 C -0.114 4.114 6 C -0.092 4.092 7 C -0.710 4.710 8 S 2.694 3.306 9 O -0.968 6.968 10 O -0.954 6.954 11 C -0.710 4.710 12 C -0.120 4.120 13 N -0.184 5.184 14 C -0.105 4.105 15 C 0.143 3.857 16 O -0.367 6.367 17 C -0.586 4.586 18 H 0.066 0.934 19 C -0.179 4.179 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.179 1.179 23 H -0.211 1.211 24 H -0.152 1.152 25 C -0.160 4.160 26 C -0.103 4.103 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.203 0.797 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.700 7.410 10.225 30.443 hybrid contribution 0.003 -1.718 -0.887 1.934 sum -27.697 5.692 9.338 29.778 Atomic orbital electron populations 1.23437 0.75912 1.05922 1.02703 1.86096 1.23933 1.26362 1.88673 1.19210 0.92176 0.85683 0.98020 1.21969 1.02061 0.91691 1.01317 1.21546 0.94083 0.98776 0.96999 1.21258 0.95273 0.97300 0.95379 1.30213 1.24905 0.99134 1.16744 1.04823 0.74256 0.73513 0.78003 1.93538 1.81362 1.47162 1.74705 1.93530 1.83791 1.43762 1.74352 1.30149 1.04351 1.14554 1.21923 1.22534 0.92663 1.03565 0.93248 1.68575 1.18826 1.16842 1.14111 1.24050 0.88949 1.00185 0.97331 1.20599 0.91325 0.92633 0.81182 1.86443 1.93880 1.38121 1.18225 1.21600 1.05407 1.12123 1.19493 0.93356 1.25905 0.97849 0.95097 0.99067 1.70020 1.29704 1.18269 1.38816 0.86304 0.81097 0.78063 0.80047 1.17948 1.21124 1.15246 1.25144 0.99354 0.91405 1.00092 1.20280 0.93207 0.97258 0.99532 0.86490 0.91126 0.91046 0.81494 0.81105 0.82379 0.81483 0.83472 0.92328 0.87995 0.89961 0.88714 0.79660 0.91896 0.89566 0.90539 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.34 -6.07 10.50 -92.38 -0.97 -7.04 16 3 C 0.10 1.81 6.69 22.51 0.15 1.96 16 4 C -0.15 -1.96 9.04 22.36 0.20 -1.76 16 5 C -0.10 -1.18 10.04 22.25 0.22 -0.95 16 6 C -0.07 -1.23 9.47 22.28 0.21 -1.02 16 7 C -0.62 -13.11 5.66 22.25 0.13 -12.98 16 8 S 2.51 60.12 5.16 -56.49 -0.29 59.83 16 9 O -0.97 -30.19 17.12 -127.65 -2.19 -32.37 16 10 O -0.96 -26.50 17.11 -127.65 -2.18 -28.68 16 11 C -0.58 -12.65 6.29 71.98 0.45 -12.20 16 12 C 0.01 0.29 4.80 86.30 0.41 0.70 16 13 N -0.46 -16.28 6.17 -909.93 -5.61 -21.89 16 14 C 0.02 0.92 7.34 86.41 0.63 1.56 16 15 C 0.18 8.45 1.05 -10.90 -0.01 8.44 16 16 O -0.56 -25.84 13.35 -148.98 -1.99 -27.83 16 17 C -0.55 -30.18 9.19 25.60 0.24 -29.95 16 18 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 19 C 0.02 1.16 5.47 84.66 0.46 1.62 16 20 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 21 Si 0.92 40.08 24.31 68.60 1.67 41.75 16 22 H -0.25 -10.44 7.05 99.48 0.70 -9.74 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.23 -9.01 5.15 99.48 0.51 -8.49 16 25 C -0.03 -1.23 6.45 86.34 0.56 -0.67 16 26 C -0.08 -1.86 9.41 22.37 0.21 -1.65 16 27 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.35 7.66 -2.39 -0.02 0.34 16 29 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 30 H 0.17 0.98 6.30 -2.91 -0.02 0.96 16 31 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.16 2.16 7.56 -2.91 -0.02 2.13 16 33 H 0.17 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.15 2.93 8.14 -2.39 -0.02 2.92 16 35 H 0.06 1.73 7.38 -2.39 -0.02 1.72 16 36 H 0.10 2.58 8.08 -2.39 -0.02 2.56 16 37 H 0.08 3.12 7.87 -2.39 -0.02 3.10 16 38 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.35 15.47 3.57 -74.06 -0.26 15.20 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.09 3.28 6.82 -2.38 -0.02 3.26 16 42 H 0.08 3.07 7.43 -2.39 -0.02 3.05 16 43 H 0.14 3.26 7.57 -2.91 -0.02 3.23 16 Total: -1.00 -77.56 362.60 -5.71 -83.27 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.57 Total: 33.91 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 4.98 Total: -45.67 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -5.31 Total: -77.16 kcal Atomic # 8 Polarization: -88.60 SS G_CDS: -7.33 Total: -95.93 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.67 Total: 41.75 kcal Atomic # 16 Polarization: 60.12 SS G_CDS: -0.29 Total: 59.83 kcal Total: -77.56 -5.71 -83.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364393095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.596 kcal (2) G-P(sol) polarization free energy of solvation -77.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds