Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34675 * 116.99624 * 2 1 4 4 O 1.21428 * 120.00124 * 359.97438 * 3 2 1 5 5 C 1.48049 * 119.99963 * 179.97438 * 3 2 1 6 6 C 1.39850 * 120.88951 * 359.97438 * 5 3 2 7 7 C 1.38531 * 119.18449 * 180.02562 * 6 5 3 8 8 N 1.31443 * 121.04398 * 359.71617 * 7 6 5 9 9 C 1.32694 * 121.97551 * 0.57139 * 8 7 6 10 10 C 1.48064 * 119.66115 * 179.70455 * 9 8 7 11 11 O 1.21433 * 120.00112 * 179.72689 * 10 9 8 12 12 O 1.34676 * 119.99704 * 359.73360 * 10 9 8 13 13 C 1.45203 * 117.00047 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47319 * 179.97438 * 13 12 10 15 15 C 1.38633 * 119.74949 * 269.72858 * 14 13 12 16 16 C 1.37617 * 120.24944 * 179.72576 * 15 14 13 17 17 C 1.40718 * 119.74164 * 0.56005 * 16 15 14 18 18 C 1.41401 * 120.24393 * 179.68489 * 17 16 15 19 19 H 1.07999 * 119.99852 * 204.41479 * 18 17 16 20 20 C 1.39940 * 119.99711 * 24.41047 * 18 17 16 21 21 N 1.30825 * 120.00049 * 17.84943 * 20 18 17 22 22 Si 1.86804 * 119.99952 * 197.84493 * 20 18 17 23 23 H 1.48502 * 109.46772 * 60.00290 * 22 20 18 24 24 H 1.48499 * 109.47160 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46944 * 300.00457 * 22 20 18 26 26 C 1.40710 * 119.51303 * 359.71722 * 17 16 15 27 27 C 1.37618 * 119.74430 * 359.97438 * 26 17 16 28 28 C 1.39290 * 120.68224 * 359.43198 * 9 8 7 29 29 H 1.09010 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47788 * 299.99960 * 1 2 3 31 31 H 1.08998 * 109.47150 * 60.00690 * 1 2 3 32 32 H 1.07997 * 120.40959 * 359.97438 * 6 5 3 33 33 H 1.08003 * 119.47430 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47424 * 59.99346 * 13 12 10 35 35 H 1.09004 * 109.46948 * 299.99835 * 13 12 10 36 36 H 1.08007 * 119.87369 * 359.96917 * 15 14 13 37 37 H 1.07997 * 120.13095 * 180.27639 * 16 15 14 38 38 H 0.97006 * 119.99615 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.13315 * 179.97438 * 26 17 16 40 40 H 1.08005 * 119.87795 * 180.02562 * 27 26 17 41 41 H 1.07997 * 120.55409 * 180.29056 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.2000 0.0000 4 8 1.4019 2.2184 -0.0005 5 6 3.5417 1.2776 0.0006 6 6 4.3216 0.1167 0.0017 7 6 5.7022 0.2304 0.0027 8 7 6.2853 1.4084 -0.0029 9 6 5.5883 2.5375 0.0015 10 6 6.2983 3.8369 0.0014 11 8 5.6665 4.8739 0.0004 12 8 7.6447 3.8685 0.0024 13 6 8.2733 5.1774 0.0017 14 6 9.7715 5.0151 0.0036 15 6 10.4547 4.9480 1.2081 16 6 11.8221 4.7942 1.2218 17 6 12.5282 4.7169 0.0071 18 6 13.9341 4.5656 0.0088 19 1 14.5133 4.8912 -0.8426 20 6 14.5749 3.9941 1.1138 21 7 13.8877 3.2913 1.9772 22 14 16.4115 4.2345 1.3560 23 1 16.7089 5.6842 1.4791 24 1 16.8438 3.5334 2.5916 25 1 17.1418 3.6766 0.1895 26 6 11.8250 4.7920 -1.2094 27 6 10.4568 4.9394 -1.1991 28 6 4.1956 2.5131 0.0004 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 3.8533 -0.8565 0.0025 33 1 6.3090 -0.6630 0.0040 34 1 7.9667 5.7282 0.8910 35 1 7.9681 5.7265 -0.8890 36 1 9.9111 5.0127 2.1392 37 1 12.3519 4.7377 2.1613 38 1 14.3320 2.8948 2.7430 39 1 12.3569 4.7342 -2.1476 40 1 9.9148 4.9969 -2.1316 41 1 3.6304 3.4334 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411330895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = -125.328118 kcal Electronic energy + Delta-G solvation = -27044.508476 eV Core-core repulsion = 22854.035651 eV Total energy + Delta-G solvation = -4190.472825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25941 -41.50284 -40.55593 -39.45229 -37.72260 -37.60145 -35.69115 -34.30982 -32.97862 -32.46486 -31.22930 -29.11964 -28.92207 -26.75727 -25.88633 -25.06915 -23.31313 -22.95149 -22.03601 -21.78967 -19.75815 -19.26435 -19.01494 -18.23971 -17.68172 -17.63058 -17.49438 -17.11918 -16.97657 -16.82131 -16.10556 -15.69652 -15.65561 -15.40771 -15.08504 -14.72532 -14.47742 -14.36808 -14.03156 -13.90405 -13.84582 -13.54018 -13.34117 -12.98513 -12.84954 -12.69362 -12.61130 -12.16573 -12.08334 -12.00290 -11.91187 -11.72770 -11.51210 -11.37718 -11.29083 -11.04352 -10.86040 -10.55397 -9.43834 -9.33434 -8.67956 -6.39308 -0.90243 -0.56770 0.68771 1.00820 1.11595 1.25998 1.39272 1.43295 1.46803 1.52226 1.78412 2.20205 2.54618 2.67535 3.00392 3.29205 3.54789 3.56888 3.57815 3.75988 4.05102 4.09430 4.10997 4.27084 4.33456 4.36702 4.46076 4.47798 4.51256 4.54576 4.68711 4.74919 5.00507 5.09577 5.12123 5.23252 5.27393 5.31435 5.40092 5.65341 5.87817 6.05666 6.14453 6.31955 6.35059 6.41656 6.64344 6.68956 6.88631 6.97382 8.28559 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.001865 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.396524 B =15006.252671 C =15687.908359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.519 3.481 4 O -0.523 6.523 5 C -0.097 4.097 6 C -0.051 4.051 7 C 0.099 3.901 8 N -0.439 5.439 9 C 0.070 3.930 10 C 0.515 3.485 11 O -0.524 6.524 12 O -0.338 6.338 13 C 0.137 3.863 14 C -0.231 4.231 15 C -0.079 4.079 16 C -0.193 4.193 17 C 0.088 3.912 18 C -0.492 4.492 19 H 0.081 0.919 20 C 0.035 3.965 21 N -0.817 5.817 22 Si 0.986 3.014 23 H -0.260 1.260 24 H -0.267 1.267 25 H -0.258 1.258 26 C -0.244 4.244 27 C -0.064 4.064 28 C -0.051 4.051 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.204 0.796 33 H 0.215 0.785 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.446 -11.854 -1.778 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C 0.363 3.637 4 O -0.413 6.413 5 C -0.106 4.106 6 C -0.071 4.071 7 C -0.062 4.062 8 N -0.151 5.151 9 C -0.064 4.064 10 C 0.359 3.641 11 O -0.413 6.413 12 O -0.253 6.253 13 C 0.065 3.935 14 C -0.233 4.233 15 C -0.098 4.098 16 C -0.213 4.213 17 C 0.085 3.915 18 C -0.521 4.521 19 H 0.099 0.901 20 C -0.182 4.182 21 N -0.442 5.442 22 Si 0.806 3.194 23 H -0.184 1.184 24 H -0.191 1.191 25 H -0.182 1.182 26 C -0.264 4.264 27 C -0.082 4.082 28 C -0.071 4.071 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.221 0.779 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.916 -11.269 -1.573 23.811 hybrid contribution -0.237 0.561 0.231 0.652 sum -21.154 -10.708 -1.343 23.747 Atomic orbital electron populations 1.23709 0.73421 1.06458 1.02892 1.86499 1.25732 1.30256 1.83384 1.20874 0.88273 0.82131 0.72381 1.90879 1.67015 1.37236 1.46163 1.19390 0.90553 0.94393 1.06232 1.23317 0.94435 1.00219 0.89106 1.23774 0.93066 0.95198 0.94123 1.67581 1.42128 0.99073 1.06344 1.19788 0.89888 0.90724 1.06013 1.21130 0.81820 0.88658 0.72489 1.90811 1.68561 1.34751 1.47225 1.86852 1.19547 1.36903 1.82000 1.21739 0.89082 0.80414 1.02309 1.18952 0.92034 1.18637 0.93642 1.20772 0.94282 0.98251 0.96479 1.21258 0.93547 1.08211 0.98257 1.18053 0.94064 0.87510 0.91856 1.19915 0.92529 1.36470 1.03186 0.90095 1.26847 1.05931 0.91498 0.93877 1.69880 1.40787 1.22307 1.11265 0.85198 0.75601 0.79726 0.78881 1.18424 1.19107 1.18181 1.21164 0.94113 1.14162 0.96949 1.20708 0.93930 0.97013 0.96568 1.22062 0.92954 0.99771 0.92313 0.84043 0.91686 0.91665 0.77905 0.76869 0.90902 0.90377 0.87675 0.87704 0.89830 0.87825 0.86497 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.39 16 2 O -0.34 -4.13 9.91 -55.84 -0.55 -4.68 16 3 C 0.52 9.38 7.92 70.43 0.56 9.93 16 4 O -0.52 -12.88 16.23 20.07 0.33 -12.55 16 5 C -0.10 -1.72 5.91 -19.91 -0.12 -1.84 16 6 C -0.05 -0.57 9.71 22.73 0.22 -0.35 16 7 C 0.10 1.51 11.17 84.82 0.95 2.46 16 8 N -0.44 -11.65 10.09 -185.11 -1.87 -13.51 16 9 C 0.07 2.02 6.75 41.88 0.28 2.30 16 10 C 0.51 18.08 7.95 70.43 0.56 18.64 16 11 O -0.52 -19.48 16.11 20.05 0.32 -19.15 16 12 O -0.34 -13.27 10.02 -55.86 -0.56 -13.83 16 13 C 0.14 5.26 5.59 71.23 0.40 5.65 16 14 C -0.23 -10.39 5.54 -19.68 -0.11 -10.50 16 15 C -0.08 -3.82 9.67 22.22 0.21 -3.61 16 16 C -0.19 -10.37 8.70 22.73 0.20 -10.17 16 17 C 0.09 4.79 5.57 -21.29 -0.12 4.68 16 18 C -0.49 -26.44 9.05 23.46 0.21 -26.23 16 19 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 20 C 0.03 1.73 5.14 85.26 0.44 2.17 16 21 N -0.82 -42.57 10.95 21.83 0.24 -42.33 16 22 Si 0.99 37.52 29.60 68.60 2.03 39.55 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 C -0.24 -12.18 9.80 22.73 0.22 -11.96 16 27 C -0.06 -2.90 9.67 22.22 0.21 -2.68 16 28 C -0.05 -1.22 9.20 22.90 0.21 -1.01 16 29 H 0.14 0.01 8.14 -2.38 -0.02 -0.01 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.20 0.50 7.70 -2.91 -0.02 0.48 16 33 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.07 2.65 8.07 -2.38 -0.02 2.63 16 35 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 36 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 38 H 0.29 13.64 8.30 -92.70 -0.77 12.87 16 39 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.15 3.95 7.33 -2.91 -0.02 3.92 16 Total: -1.00 -71.78 372.31 6.54 -65.24 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.08 Total: 22.38 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 5.53 Total: -21.10 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.63 Total: -55.85 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.46 Total: -50.22 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -71.78 6.54 -65.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411330895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.088 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds