Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42095 * 108.58120 * 2 1 4 4 O 1.42107 * 108.57281 * 131.01941 * 2 1 3 5 5 C 1.81399 * 101.92155 * 245.50572 * 2 1 3 6 6 C 1.53004 * 109.46970 * 180.02562 * 5 2 1 7 7 H 1.09000 * 109.47276 * 59.99505 * 6 5 2 8 8 O 1.42904 * 109.46850 * 299.99907 * 6 5 2 9 9 C 1.53000 * 109.47232 * 180.02562 * 6 5 2 10 10 N 1.46499 * 109.47055 * 185.00092 * 9 6 5 11 11 C 1.34778 * 119.99668 * 180.02562 * 10 9 6 12 12 O 1.21273 * 120.00189 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.50696 * 109.46796 * 179.97438 * 13 11 10 15 15 C 1.37648 * 120.12718 * 264.99594 * 14 13 11 16 16 C 1.38615 * 120.24627 * 179.97438 * 15 14 13 17 17 C 1.38647 * 120.50377 * 0.02562 * 16 15 14 18 18 C 1.37597 * 120.25040 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.13329 * 84.72674 * 14 13 11 20 20 C 1.41396 * 120.23891 * 359.97438 * 19 14 13 21 21 H 1.08003 * 120.00544 * 329.70268 * 20 19 14 22 22 C 1.39949 * 120.00088 * 149.69982 * 20 19 14 23 23 N 1.30825 * 120.00205 * 162.01242 * 22 20 19 24 24 Si 1.86802 * 119.99924 * 342.02189 * 22 20 19 25 25 H 1.48496 * 109.47358 * 95.39655 * 24 22 20 26 26 H 1.48496 * 109.46882 * 215.39786 * 24 22 20 27 27 H 1.48501 * 109.46856 * 335.39493 * 24 22 20 28 28 H 1.09007 * 109.46955 * 54.49433 * 1 2 3 29 29 H 1.08998 * 109.47640 * 174.48620 * 1 2 3 30 30 H 1.08995 * 109.47497 * 294.49492 * 1 2 3 31 31 H 1.08997 * 109.47234 * 300.00016 * 5 2 1 32 32 H 1.08999 * 109.46848 * 60.00675 * 5 2 1 33 33 H 0.96693 * 114.00280 * 300.00540 * 8 6 5 34 34 H 1.09004 * 109.46863 * 305.00156 * 9 6 5 35 35 H 1.09000 * 109.47113 * 64.99411 * 9 6 5 36 36 H 0.96997 * 120.00216 * 359.97438 * 10 9 6 37 37 H 1.08997 * 109.47085 * 299.99703 * 13 11 10 38 38 H 1.08998 * 109.47115 * 59.99942 * 13 11 10 39 39 H 1.07992 * 119.87348 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.74706 * 180.02562 * 16 15 14 41 41 H 1.08005 * 119.87806 * 179.97438 * 17 16 15 42 42 H 1.08004 * 120.12735 * 179.97438 * 18 17 16 43 43 H 0.96993 * 120.00198 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8841 1.0163 5 6 2.1887 -0.7359 -1.6151 6 6 3.7055 -0.8198 -1.7978 7 1 4.1328 -1.4384 -1.0086 8 8 4.2666 0.4928 -1.7305 9 6 4.0216 -1.4398 -3.1603 10 7 5.4687 -1.6302 -3.2862 11 6 5.9825 -2.1654 -4.4114 12 8 5.2469 -2.4898 -5.3194 13 6 7.4712 -2.3607 -4.5412 14 6 7.7825 -2.9716 -5.8832 15 6 7.9251 -4.3352 -6.0053 16 6 8.2109 -4.8997 -7.2385 17 6 8.3568 -4.1001 -8.3617 18 6 8.2196 -2.7345 -8.2631 19 6 7.9228 -2.1509 -7.0174 20 6 7.7723 -0.7494 -6.9052 21 1 7.1098 -0.3353 -6.1595 22 6 8.4818 0.1012 -7.7606 23 7 8.1013 1.3439 -7.9106 24 14 9.9719 -0.5378 -8.6883 25 1 9.5609 -0.9682 -10.0488 26 1 10.9876 0.5400 -8.7958 27 1 10.5517 -1.6933 -7.9575 28 1 -0.3633 0.5969 -0.8366 29 1 -0.3634 -1.0229 -0.0987 30 1 -0.3634 0.4261 0.9351 31 1 1.7610 -1.7371 -1.6663 32 1 1.7611 -0.1173 -2.4042 33 1 3.9311 1.0990 -2.4049 34 1 3.5195 -2.4035 -3.2462 35 1 3.6721 -0.7763 -3.9513 36 1 6.0571 -1.3704 -2.5602 37 1 7.9729 -1.3969 -4.4552 38 1 7.8209 -3.0244 -3.7504 39 1 7.8132 -4.9676 -5.1370 40 1 8.3208 -5.9706 -7.3252 41 1 8.5799 -4.5506 -9.3177 42 1 8.3340 -2.1135 -9.1392 43 1 8.5932 1.9336 -8.5031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412733126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -139.400154 kcal Electronic energy + Delta-G solvation = -27140.185083 eV Core-core repulsion = 23084.546000 eV Total energy + Delta-G solvation = -4055.639083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.49644 -38.22493 -37.37891 -37.27083 -36.29256 -34.02652 -33.55898 -32.05480 -31.58298 -30.29462 -30.01155 -27.83027 -26.03844 -24.69015 -22.36798 -21.38715 -20.58457 -19.37584 -19.23433 -17.65636 -17.31592 -16.96723 -16.79475 -16.46676 -15.93029 -15.81307 -15.64323 -15.14531 -14.82571 -14.32985 -14.18917 -13.84330 -13.67339 -13.63870 -13.61476 -13.10605 -12.99314 -12.68141 -12.36403 -12.34978 -12.28193 -12.10483 -11.87492 -11.77125 -11.38884 -11.34985 -11.24910 -11.06600 -10.78063 -10.71647 -10.44925 -10.22438 -9.68339 -9.53904 -9.23733 -9.09583 -8.78047 -7.57026 -7.47438 -6.90909 -4.44734 -0.43889 2.35178 2.58233 2.74424 3.12307 3.14641 3.23804 3.30084 3.35039 3.54271 3.59781 3.96786 4.01452 4.17757 4.22053 4.33100 4.50209 4.55249 4.58589 4.92137 5.05646 5.17458 5.33665 5.52114 5.64760 5.73931 5.90581 6.02704 6.11692 6.21584 6.32457 6.61199 6.70613 6.75058 6.98340 7.23631 7.26323 7.45960 7.69063 7.77179 7.90014 7.94756 8.17630 8.39084 8.71515 8.81650 8.85596 10.11327 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.002459 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.173442 B =11385.251925 C =12380.442725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.435 3.565 3 O -0.921 6.921 4 O -0.939 6.939 5 C -0.654 4.654 6 C 0.109 3.891 7 H 0.122 0.878 8 O -0.546 6.546 9 C 0.098 3.902 10 N -0.740 5.740 11 C 0.517 3.483 12 O -0.523 6.523 13 C -0.074 4.074 14 C -0.166 4.166 15 C -0.069 4.069 16 C -0.243 4.243 17 C -0.080 4.080 18 C -0.234 4.234 19 C 0.109 3.891 20 C -0.443 4.443 21 H 0.089 0.911 22 C 0.085 3.915 23 N -0.810 5.810 24 Si 0.910 3.090 25 H -0.272 1.272 26 H -0.292 1.292 27 H -0.244 1.244 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.388 0.612 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 -1.915 13.714 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.614 3.386 3 O -0.918 6.918 4 O -0.936 6.936 5 C -0.783 4.783 6 C 0.048 3.952 7 H 0.139 0.861 8 O -0.353 6.353 9 C -0.028 4.028 10 N -0.395 5.395 11 C 0.305 3.695 12 O -0.397 6.397 13 C -0.114 4.114 14 C -0.168 4.168 15 C -0.088 4.088 16 C -0.262 4.262 17 C -0.099 4.099 18 C -0.253 4.253 19 C 0.106 3.894 20 C -0.472 4.472 21 H 0.107 0.893 22 C -0.134 4.134 23 N -0.434 5.434 24 Si 0.737 3.263 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.167 1.167 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.237 0.763 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.176 -1.823 14.103 18.721 hybrid contribution -0.357 -0.089 -1.422 1.468 sum -12.533 -1.912 12.681 17.932 Atomic orbital electron populations 1.30358 1.27428 1.11507 1.11833 1.07584 0.77817 0.76001 0.77153 1.93623 1.78380 1.33888 1.85952 1.93604 1.79035 1.67378 1.53566 1.31137 1.06665 1.15420 1.25033 1.21793 0.87690 0.86314 0.99436 0.86051 1.86696 1.68889 1.20747 1.58973 1.21832 0.83613 1.01472 0.95834 1.45982 1.06806 1.66657 1.20099 1.21150 0.91726 0.75892 0.80756 1.90684 1.61519 1.48919 1.38564 1.20292 0.90984 1.03007 0.97088 1.19074 1.12075 0.92886 0.92785 1.20435 0.98392 0.93832 0.96112 1.20328 1.14953 0.97412 0.93521 1.20594 0.98617 0.93945 0.96702 1.20997 1.13056 0.94202 0.97027 1.17487 0.88382 0.93408 0.90114 1.19404 1.22782 0.89298 1.15719 0.89339 1.26156 0.98549 0.94509 0.94186 1.69701 1.36438 1.06692 1.30580 0.86341 0.80623 0.79113 0.80263 1.19809 1.21995 1.16680 0.85329 0.85431 0.85237 0.83708 0.84162 0.76310 0.90768 0.90955 0.76381 0.88026 0.90244 0.89102 0.89030 0.89033 0.88349 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.94 10.62 101.05 1.07 -0.87 16 2 S 2.43 15.78 5.25 -107.50 -0.56 15.21 16 3 O -0.92 -9.76 17.12 -63.76 -1.09 -10.85 16 4 O -0.94 -9.84 18.10 -57.83 -1.05 -10.89 16 5 C -0.65 -3.26 5.51 37.16 0.20 -3.06 16 6 C 0.11 0.94 3.05 -26.73 -0.08 0.86 16 7 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 8 O -0.55 -5.62 12.08 -48.26 -0.58 -6.21 16 9 C 0.10 1.13 5.31 -4.04 -0.02 1.11 16 10 N -0.74 -10.44 5.50 -60.29 -0.33 -10.77 16 11 C 0.52 9.84 7.42 -10.98 -0.08 9.75 16 12 O -0.52 -12.25 16.03 5.56 0.09 -12.16 16 13 C -0.07 -1.40 5.19 -29.04 -0.15 -1.55 16 14 C -0.17 -3.83 4.43 -103.91 -0.46 -4.29 16 15 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 16 C -0.24 -5.25 10.05 -39.29 -0.39 -5.65 16 17 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 18 C -0.23 -5.86 7.17 -38.87 -0.28 -6.13 16 19 C 0.11 2.80 5.10 -106.83 -0.54 2.26 16 20 C -0.44 -11.93 8.56 -37.74 -0.32 -12.25 16 21 H 0.09 2.50 6.99 -52.48 -0.37 2.13 16 22 C 0.08 2.22 5.41 -17.34 -0.09 2.13 16 23 N -0.81 -21.62 13.93 55.55 0.77 -20.85 16 24 Si 0.91 20.98 24.52 -169.99 -4.17 16.82 16 25 H -0.27 -6.17 6.71 56.52 0.38 -5.79 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.24 -5.72 6.85 56.52 0.39 -5.33 16 28 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.13 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.14 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.39 3.04 9.04 45.56 0.41 3.45 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 4.74 8.47 -40.82 -0.35 4.40 16 37 H 0.10 1.93 7.15 -51.93 -0.37 1.56 16 38 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.10 2.46 4.74 -52.48 -0.25 2.21 16 43 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -38.82 372.76 -8.40 -47.22 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.16 Total: 8.64 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.93 Total: -21.78 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.44 Total: -31.62 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -2.63 Total: -40.11 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.82 kcal Atomic # 16 Polarization: 15.78 SS G_CDS: -0.56 Total: 15.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.82 -8.40 -47.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412733126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.177 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds