Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42095 * 108.58120 * 2 1 4 4 O 1.42107 * 108.57281 * 131.01941 * 2 1 3 5 5 C 1.81399 * 101.92155 * 245.50572 * 2 1 3 6 6 C 1.53004 * 109.46970 * 180.02562 * 5 2 1 7 7 H 1.09000 * 109.47276 * 59.99505 * 6 5 2 8 8 O 1.42904 * 109.46850 * 299.99907 * 6 5 2 9 9 C 1.53000 * 109.47232 * 180.02562 * 6 5 2 10 10 N 1.46499 * 109.47055 * 185.00092 * 9 6 5 11 11 C 1.34778 * 119.99668 * 180.02562 * 10 9 6 12 12 O 1.21273 * 120.00189 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.50696 * 109.46796 * 179.97438 * 13 11 10 15 15 C 1.37648 * 120.12718 * 264.99594 * 14 13 11 16 16 C 1.38615 * 120.24627 * 179.97438 * 15 14 13 17 17 C 1.38647 * 120.50377 * 0.02562 * 16 15 14 18 18 C 1.37597 * 120.25040 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.13329 * 84.72674 * 14 13 11 20 20 C 1.41396 * 120.23891 * 359.97438 * 19 14 13 21 21 H 1.08003 * 120.00544 * 329.70268 * 20 19 14 22 22 C 1.39949 * 120.00088 * 149.69982 * 20 19 14 23 23 N 1.30825 * 120.00205 * 162.01242 * 22 20 19 24 24 Si 1.86802 * 119.99924 * 342.02189 * 22 20 19 25 25 H 1.48496 * 109.47358 * 95.39655 * 24 22 20 26 26 H 1.48496 * 109.46882 * 215.39786 * 24 22 20 27 27 H 1.48501 * 109.46856 * 335.39493 * 24 22 20 28 28 H 1.09007 * 109.46955 * 54.49433 * 1 2 3 29 29 H 1.08998 * 109.47640 * 174.48620 * 1 2 3 30 30 H 1.08995 * 109.47497 * 294.49492 * 1 2 3 31 31 H 1.08997 * 109.47234 * 300.00016 * 5 2 1 32 32 H 1.08999 * 109.46848 * 60.00675 * 5 2 1 33 33 H 0.96693 * 114.00280 * 300.00540 * 8 6 5 34 34 H 1.09004 * 109.46863 * 305.00156 * 9 6 5 35 35 H 1.09000 * 109.47113 * 64.99411 * 9 6 5 36 36 H 0.96997 * 120.00216 * 359.97438 * 10 9 6 37 37 H 1.08997 * 109.47085 * 299.99703 * 13 11 10 38 38 H 1.08998 * 109.47115 * 59.99942 * 13 11 10 39 39 H 1.07992 * 119.87348 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.74706 * 180.02562 * 16 15 14 41 41 H 1.08005 * 119.87806 * 179.97438 * 17 16 15 42 42 H 1.08004 * 120.12735 * 179.97438 * 18 17 16 43 43 H 0.96993 * 120.00198 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8841 1.0163 5 6 2.1887 -0.7359 -1.6151 6 6 3.7055 -0.8198 -1.7978 7 1 4.1328 -1.4384 -1.0086 8 8 4.2666 0.4928 -1.7305 9 6 4.0216 -1.4398 -3.1603 10 7 5.4687 -1.6302 -3.2862 11 6 5.9825 -2.1654 -4.4114 12 8 5.2469 -2.4898 -5.3194 13 6 7.4712 -2.3607 -4.5412 14 6 7.7825 -2.9716 -5.8832 15 6 7.9251 -4.3352 -6.0053 16 6 8.2109 -4.8997 -7.2385 17 6 8.3568 -4.1001 -8.3617 18 6 8.2196 -2.7345 -8.2631 19 6 7.9228 -2.1509 -7.0174 20 6 7.7723 -0.7494 -6.9052 21 1 7.1098 -0.3353 -6.1595 22 6 8.4818 0.1012 -7.7606 23 7 8.1013 1.3439 -7.9106 24 14 9.9719 -0.5378 -8.6883 25 1 9.5609 -0.9682 -10.0488 26 1 10.9876 0.5400 -8.7958 27 1 10.5517 -1.6933 -7.9575 28 1 -0.3633 0.5969 -0.8366 29 1 -0.3634 -1.0229 -0.0987 30 1 -0.3634 0.4261 0.9351 31 1 1.7610 -1.7371 -1.6663 32 1 1.7611 -0.1173 -2.4042 33 1 3.9311 1.0990 -2.4049 34 1 3.5195 -2.4035 -3.2462 35 1 3.6721 -0.7763 -3.9513 36 1 6.0571 -1.3704 -2.5602 37 1 7.9729 -1.3969 -4.4552 38 1 7.8209 -3.0244 -3.7504 39 1 7.8132 -4.9676 -5.1370 40 1 8.3208 -5.9706 -7.3252 41 1 8.5799 -4.5506 -9.3177 42 1 8.3340 -2.1135 -9.1392 43 1 8.5932 1.9336 -8.5031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412733126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -172.819468 kcal Electronic energy + Delta-G solvation = -27141.634253 eV Core-core repulsion = 23084.546000 eV Total energy + Delta-G solvation = -4057.088253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90791 -39.52348 -38.71017 -37.91877 -36.92828 -35.47332 -35.25895 -33.55908 -32.47158 -32.13781 -30.33367 -29.16757 -27.37073 -26.38488 -23.27006 -23.09416 -22.13788 -20.94629 -19.80234 -19.24131 -18.50488 -17.84467 -17.62990 -17.48854 -17.24386 -16.70804 -16.58827 -16.35749 -16.15704 -15.96659 -15.47430 -15.28732 -14.96037 -14.60124 -14.42727 -13.96138 -13.90592 -13.86798 -13.74712 -13.67972 -13.25758 -13.12009 -13.00273 -12.94193 -12.67844 -12.64930 -12.49717 -12.47772 -11.98870 -11.91776 -11.78096 -11.52564 -11.37358 -11.20623 -10.96270 -10.75440 -10.05168 -9.38817 -9.27647 -8.85509 -6.43288 -0.90706 0.80845 0.91579 1.27485 1.40459 1.49639 1.80925 1.92939 2.14257 2.25099 2.65742 2.83529 3.11094 3.35331 3.50763 3.59326 3.64837 3.85593 4.09736 4.13498 4.17764 4.30071 4.35872 4.38628 4.47323 4.59675 4.65387 4.69592 4.75580 4.86648 4.95153 5.00336 5.00682 5.17893 5.38843 5.49961 5.69103 5.88110 5.96873 6.06783 6.30902 6.47072 6.58198 6.64355 6.82129 6.92583 7.40528 8.22353 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.002459 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.173442 B =11385.251925 C =12380.442725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.434 3.566 3 O -0.974 6.974 4 O -0.988 6.988 5 C -0.644 4.644 6 C 0.109 3.891 7 H 0.125 0.875 8 O -0.566 6.566 9 C 0.095 3.905 10 N -0.724 5.724 11 C 0.517 3.483 12 O -0.575 6.575 13 C -0.077 4.077 14 C -0.171 4.171 15 C -0.079 4.079 16 C -0.230 4.230 17 C -0.092 4.092 18 C -0.257 4.257 19 C 0.082 3.918 20 C -0.468 4.468 21 H 0.057 0.943 22 C 0.048 3.952 23 N -0.852 5.852 24 Si 0.962 3.038 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.251 1.251 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.177 0.823 32 H 0.167 0.833 33 H 0.395 0.605 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 -4.403 14.272 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.620 3.380 3 O -0.971 6.971 4 O -0.985 6.985 5 C -0.774 4.774 6 C 0.048 3.952 7 H 0.142 0.858 8 O -0.375 6.375 9 C -0.030 4.030 10 N -0.378 5.378 11 C 0.305 3.695 12 O -0.453 6.453 13 C -0.116 4.116 14 C -0.173 4.173 15 C -0.097 4.097 16 C -0.249 4.249 17 C -0.110 4.110 18 C -0.276 4.276 19 C 0.080 3.920 20 C -0.498 4.498 21 H 0.076 0.924 22 C -0.166 4.166 23 N -0.478 5.478 24 Si 0.787 3.213 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.175 1.175 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.195 0.805 32 H 0.185 0.815 33 H 0.246 0.754 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.250 0.750 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.059 -4.284 14.725 20.143 hybrid contribution -0.204 0.481 -1.521 1.608 sum -13.263 -3.803 13.204 19.098 Atomic orbital electron populations 1.30150 1.21980 1.13927 1.13318 1.07180 0.79611 0.74313 0.76868 1.93561 1.80660 1.36174 1.86706 1.93541 1.81199 1.67964 1.55822 1.31030 1.04026 1.17826 1.24487 1.21809 0.90357 0.85438 0.97579 0.85773 1.86676 1.69752 1.21566 1.59474 1.22043 0.81704 1.01994 0.97300 1.45832 1.08500 1.64586 1.18888 1.21086 0.91484 0.75773 0.81187 1.90655 1.62500 1.51690 1.40487 1.20350 0.91322 1.03346 0.96582 1.19555 1.10307 0.93763 0.93684 1.20905 0.97497 0.93597 0.97723 1.20878 1.11809 0.99277 0.92955 1.20975 0.98233 0.93085 0.98713 1.21144 1.14303 0.95571 0.96598 1.17742 0.89486 0.93251 0.91570 1.19314 1.23848 0.90399 1.16237 0.92439 1.26766 1.00391 0.94592 0.94868 1.69734 1.38007 1.07698 1.32399 0.85534 0.78130 0.78534 0.79137 1.19384 1.20574 1.17457 0.82955 0.82795 0.84660 0.80504 0.81535 0.75430 0.89862 0.92033 0.74977 0.88859 0.86151 0.85506 0.85380 0.86107 0.89194 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.60 10.62 113.37 1.20 -0.39 16 2 S 2.43 28.96 5.25 -56.49 -0.30 28.66 16 3 O -0.97 -20.89 17.12 -121.70 -2.08 -22.98 16 4 O -0.99 -20.52 18.10 -127.37 -2.31 -22.83 16 5 C -0.64 -4.94 5.51 71.98 0.40 -4.54 16 6 C 0.11 1.77 3.05 30.60 0.09 1.86 16 7 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 8 O -0.57 -11.72 12.08 -136.52 -1.65 -13.37 16 9 C 0.09 2.10 5.31 86.38 0.46 2.56 16 10 N -0.72 -20.12 5.50 -463.06 -2.55 -22.67 16 11 C 0.52 19.65 7.42 87.66 0.65 20.31 16 12 O -0.57 -27.30 16.03 -3.01 -0.05 -27.35 16 13 C -0.08 -2.85 5.19 29.10 0.15 -2.70 16 14 C -0.17 -7.76 4.43 -19.40 -0.09 -7.85 16 15 C -0.08 -3.19 9.66 22.22 0.21 -2.97 16 16 C -0.23 -9.12 10.05 22.46 0.23 -8.89 16 17 C -0.09 -3.96 10.02 22.22 0.22 -3.74 16 18 C -0.26 -12.83 7.17 22.73 0.16 -12.66 16 19 C 0.08 4.28 5.10 -21.29 -0.11 4.17 16 20 C -0.47 -26.35 8.56 23.46 0.20 -26.15 16 21 H 0.06 3.47 6.99 -2.91 -0.02 3.45 16 22 C 0.05 2.60 5.41 85.26 0.46 3.07 16 23 N -0.85 -47.49 13.93 21.83 0.30 -47.18 16 24 Si 0.96 44.13 24.52 68.60 1.68 45.81 16 25 H -0.27 -11.94 6.71 99.48 0.67 -11.27 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.25 -11.64 6.85 99.48 0.68 -10.95 16 28 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.15 -0.33 8.14 -2.39 -0.02 -0.34 16 30 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.18 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.17 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.39 6.38 9.04 -74.06 -0.67 5.71 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 9.50 8.47 -92.71 -0.79 8.72 16 37 H 0.09 3.64 7.15 -2.39 -0.02 3.62 16 38 H 0.12 3.39 8.05 -2.39 -0.02 3.37 16 39 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 42 H 0.09 4.54 4.74 -2.91 -0.01 4.52 16 43 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 Total: -1.00 -88.79 372.76 -3.16 -91.95 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.46 Total: 27.90 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 4.25 Total: -37.94 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -2.24 Total: -69.85 kcal Atomic # 8 Polarization: -80.44 SS G_CDS: -6.09 Total: -86.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.68 Total: 45.81 kcal Atomic # 16 Polarization: 28.96 SS G_CDS: -0.30 Total: 28.66 kcal Total: -88.79 -3.16 -91.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412733126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.871 kcal (2) G-P(sol) polarization free energy of solvation -88.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds