Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42098 * 108.57573 * 2 1 4 4 O 1.42099 * 108.57799 * 228.97201 * 2 1 3 5 5 C 1.81403 * 101.91736 * 114.48283 * 2 1 3 6 6 C 1.53003 * 109.46770 * 179.97438 * 5 2 1 7 7 H 1.08992 * 109.47492 * 305.00162 * 6 5 2 8 8 O 1.42904 * 109.47155 * 65.00419 * 6 5 2 9 9 C 1.53006 * 109.46903 * 185.00034 * 6 5 2 10 10 N 1.46495 * 109.46892 * 180.02562 * 9 6 5 11 11 C 1.34780 * 120.00090 * 180.02562 * 10 9 6 12 12 O 1.21279 * 119.99714 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.50706 * 109.46838 * 179.97438 * 13 11 10 15 15 C 1.37637 * 120.12505 * 264.99378 * 14 13 11 16 16 C 1.38616 * 120.24712 * 179.97438 * 15 14 13 17 17 C 1.38651 * 120.50002 * 0.02562 * 16 15 14 18 18 C 1.37605 * 120.25167 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.12958 * 84.72449 * 14 13 11 20 20 C 1.41400 * 120.24502 * 359.97438 * 19 14 13 21 21 H 1.08003 * 119.99730 * 333.90027 * 20 19 14 22 22 C 1.39943 * 120.00194 * 153.89645 * 20 19 14 23 23 N 1.30816 * 120.00224 * 343.71970 * 22 20 19 24 24 Si 1.86804 * 120.00102 * 163.71638 * 22 20 19 25 25 H 1.48504 * 109.46895 * 59.99978 * 24 22 20 26 26 H 1.48500 * 109.47297 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47032 * 300.00608 * 24 22 20 28 28 H 1.09001 * 109.46884 * 305.51530 * 1 2 3 29 29 H 1.08998 * 109.46331 * 65.51751 * 1 2 3 30 30 H 1.08999 * 109.46709 * 185.51406 * 1 2 3 31 31 H 1.09003 * 109.47031 * 60.00132 * 5 2 1 32 32 H 1.08995 * 109.47313 * 300.00231 * 5 2 1 33 33 H 0.96702 * 113.99432 * 59.99131 * 8 6 5 34 34 H 1.09002 * 109.47195 * 300.00316 * 9 6 5 35 35 H 1.09003 * 109.46876 * 60.00571 * 9 6 5 36 36 H 0.97005 * 120.00525 * 359.97438 * 10 9 6 37 37 H 1.09002 * 109.46919 * 299.99322 * 13 11 10 38 38 H 1.08990 * 109.47635 * 59.99462 * 13 11 10 39 39 H 1.08002 * 119.87446 * 0.02562 * 15 14 13 40 40 H 1.07994 * 119.74665 * 179.97438 * 16 15 14 41 41 H 1.08005 * 119.87707 * 179.97438 * 17 16 15 42 42 H 1.07995 * 120.12386 * 179.97438 * 18 17 16 43 43 H 0.96996 * 120.00594 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 1 4.1428 -1.3634 0.9609 8 8 4.2530 0.4996 1.8472 9 6 4.0221 -1.5521 3.1035 10 7 5.4744 -1.6319 3.2787 11 6 5.9896 -2.2393 4.3659 12 8 5.2509 -2.7194 5.1994 13 6 7.4835 -2.3209 4.5465 14 6 7.7954 -3.0426 5.8322 15 6 8.0259 -2.3292 6.9864 16 6 8.3125 -2.9904 8.1705 17 6 8.3709 -4.3752 8.2069 18 6 8.1449 -5.1088 7.0649 19 6 7.8465 -4.4484 5.8585 20 6 7.6053 -5.1920 4.6803 21 1 6.9930 -4.7749 3.8944 22 6 8.1598 -6.4683 4.5326 23 7 9.1404 -6.8495 5.3100 24 14 7.4998 -7.6279 3.2252 25 1 7.6637 -7.0082 1.8856 26 1 8.2508 -8.9081 3.2742 27 1 6.0598 -7.8893 3.4767 28 1 -0.3633 0.5970 0.8365 29 1 -0.3632 0.4259 -0.9353 30 1 -0.3633 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6666 32 1 1.7610 -0.1170 2.4043 33 1 3.9080 1.0419 2.5697 34 1 3.5848 -1.0081 3.9407 35 1 3.6045 -2.5582 3.0659 36 1 6.0652 -1.2482 2.6119 37 1 7.9215 -2.8641 3.7091 38 1 7.9004 -1.3146 4.5847 39 1 7.9825 -1.2501 6.9696 40 1 8.4924 -2.4225 9.0713 41 1 8.5954 -4.8800 9.1349 42 1 8.1913 -6.1873 7.0954 43 1 9.5246 -7.7342 5.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412733131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -140.786674 kcal Electronic energy + Delta-G solvation = -27096.687602 eV Core-core repulsion = 23040.988395 eV Total energy + Delta-G solvation = -4055.699207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.47881 -38.17579 -37.32268 -37.16385 -36.33022 -34.02057 -33.59847 -32.03113 -31.50374 -30.04538 -29.43363 -27.73442 -25.97251 -24.82420 -22.39587 -20.92029 -20.59351 -19.31922 -19.26271 -17.70195 -17.13744 -17.04307 -16.79884 -16.43104 -15.94803 -15.73336 -15.51022 -15.15600 -14.65787 -14.40301 -14.22601 -13.72316 -13.68121 -13.56190 -13.49534 -13.01099 -12.99175 -12.56817 -12.39368 -12.33597 -12.30834 -11.83251 -11.71043 -11.54417 -11.38909 -11.30048 -11.14335 -10.99663 -10.96000 -10.68541 -10.48563 -10.38823 -9.46483 -9.36136 -9.20087 -9.13200 -8.78887 -7.28970 -7.27038 -6.71235 -4.32249 -0.46867 2.31688 2.80993 2.96163 3.07420 3.10493 3.14838 3.29572 3.31662 3.50405 3.59259 3.91082 3.95240 4.15565 4.20076 4.30435 4.46001 4.55358 4.68566 4.89538 5.01015 5.15006 5.42849 5.59705 5.68094 5.84096 6.05248 6.16585 6.30978 6.46150 6.53306 6.69367 6.82600 7.10933 7.16924 7.31944 7.44694 7.66182 7.88027 7.96793 8.09548 8.15283 8.33924 8.66882 8.83459 8.93953 9.03915 10.22924 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.002648 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.784663 B =10571.210426 C =12018.503953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.433 3.567 3 O -0.923 6.923 4 O -0.937 6.937 5 C -0.653 4.653 6 C 0.108 3.892 7 H 0.123 0.877 8 O -0.545 6.545 9 C 0.098 3.902 10 N -0.742 5.742 11 C 0.515 3.485 12 O -0.523 6.523 13 C -0.070 4.070 14 C -0.181 4.181 15 C -0.081 4.081 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.160 4.160 19 C 0.129 3.871 20 C -0.457 4.457 21 H 0.073 0.927 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.903 3.097 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.384 0.616 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.402 0.598 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.895 11.397 -9.473 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.613 3.387 3 O -0.920 6.920 4 O -0.934 6.934 5 C -0.782 4.782 6 C 0.047 3.953 7 H 0.141 0.859 8 O -0.351 6.351 9 C -0.028 4.028 10 N -0.398 5.398 11 C 0.303 3.697 12 O -0.396 6.396 13 C -0.110 4.110 14 C -0.183 4.183 15 C -0.100 4.100 16 C -0.260 4.260 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.126 3.874 20 C -0.487 4.487 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.421 5.421 24 Si 0.728 3.272 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.190 1.190 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.237 0.763 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.380 10.916 -9.979 20.628 hybrid contribution -1.126 -0.639 0.325 1.335 sum -15.506 10.277 -9.654 20.958 Atomic orbital electron populations 1.30347 1.27343 1.11566 1.11789 1.07631 0.77905 0.75976 0.77211 1.93619 1.78474 1.33927 1.86004 1.93617 1.78993 1.67287 1.53497 1.31131 1.06597 1.15476 1.24965 1.21811 0.87889 0.85425 1.00143 0.85949 1.86707 1.68888 1.23426 1.56124 1.21815 0.83674 1.01309 0.95994 1.46029 1.06176 1.61623 1.25928 1.21293 0.92094 0.76249 0.80038 1.90677 1.61618 1.44926 1.42421 1.20261 0.90282 1.00573 0.99898 1.19061 1.13167 0.93570 0.92511 1.20302 0.99942 0.96674 0.93035 1.20304 1.14751 0.94258 0.96649 1.20677 1.00973 0.93866 0.97054 1.21297 1.05481 0.99520 0.91611 1.17335 0.87403 0.89948 0.92667 1.19435 1.27512 0.99230 1.02507 0.90850 1.25874 0.93146 0.98430 0.96593 1.69805 1.17517 1.19742 1.35040 0.86451 0.80178 0.79303 0.81281 1.19014 1.20334 1.18962 0.85384 0.85228 0.85363 0.83584 0.84238 0.76768 0.91257 0.90527 0.76333 0.88482 0.90481 0.89769 0.89684 0.89603 0.86531 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.78 10.62 101.05 1.07 -0.71 16 2 S 2.43 15.13 5.29 -107.50 -0.57 14.56 16 3 O -0.92 -9.28 17.32 -62.44 -1.08 -10.36 16 4 O -0.94 -9.90 18.10 -57.83 -1.05 -10.95 16 5 C -0.65 -3.05 5.47 37.16 0.20 -2.84 16 6 C 0.11 0.90 3.05 -26.73 -0.08 0.82 16 7 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 8 O -0.55 -4.87 12.17 -43.31 -0.53 -5.40 16 9 C 0.10 1.09 5.34 -4.04 -0.02 1.07 16 10 N -0.74 -10.29 5.45 -60.29 -0.33 -10.62 16 11 C 0.52 9.79 7.44 -10.99 -0.08 9.71 16 12 O -0.52 -12.19 16.03 5.56 0.09 -12.10 16 13 C -0.07 -1.37 5.18 -29.03 -0.15 -1.52 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.08 -1.88 9.66 -39.66 -0.38 -2.27 16 16 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 17 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 18 C -0.16 -4.30 8.69 -38.87 -0.34 -4.63 16 19 C 0.13 3.46 5.56 -106.83 -0.59 2.86 16 20 C -0.46 -12.05 8.14 -37.74 -0.31 -12.35 16 21 H 0.07 1.87 6.67 -52.48 -0.35 1.52 16 22 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 23 N -0.80 -20.62 10.96 55.55 0.61 -20.01 16 24 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 28 H 0.13 0.12 8.14 -51.92 -0.42 -0.31 16 29 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 31 H 0.15 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.14 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.38 2.20 9.05 45.56 0.41 2.62 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 4.69 8.35 -40.82 -0.34 4.35 16 37 H 0.10 1.87 7.08 -51.93 -0.37 1.50 16 38 H 0.08 1.26 8.05 -51.93 -0.42 0.85 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.21 6.21 -52.49 -0.33 2.89 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -38.58 378.04 -9.39 -47.96 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.17 Total: 9.24 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.02 Total: -21.91 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.28 Total: -30.63 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.57 Total: -38.81 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 15.13 SS G_CDS: -0.57 Total: 14.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.58 -9.39 -47.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412733131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.823 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds