Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00323 * 2 1 4 4 H 1.08996 * 109.54443 * 29.81420 * 3 2 1 5 5 C 1.53180 * 109.61371 * 269.59271 * 3 2 1 6 6 C 1.53091 * 109.16395 * 183.10570 * 5 3 2 7 7 O 1.42906 * 109.40872 * 57.61684 * 6 5 3 8 8 C 1.42910 * 114.15426 * 298.86725 * 7 6 5 9 9 C 1.53094 * 109.40824 * 61.06478 * 8 7 6 10 10 H 1.08998 * 109.52416 * 62.42842 * 9 8 7 11 11 N 1.46502 * 109.52103 * 182.55600 * 9 8 7 12 12 S 1.65605 * 119.99537 * 264.87361 * 11 9 8 13 13 O 1.42102 * 106.40248 * 311.45868 * 12 11 9 14 14 O 1.42099 * 106.40171 * 178.54180 * 12 11 9 15 15 C 1.76195 * 107.21994 * 64.99895 * 12 11 9 16 16 C 1.38639 * 119.74789 * 89.99919 * 15 12 11 17 17 C 1.37620 * 120.24897 * 180.23469 * 16 15 12 18 18 C 1.40715 * 119.74131 * 359.51904 * 17 16 15 19 19 C 1.41399 * 120.24183 * 180.22985 * 18 17 16 20 20 H 1.07996 * 120.00044 * 204.52621 * 19 18 17 21 21 C 1.39950 * 119.99773 * 24.53568 * 19 18 17 22 22 N 1.30821 * 119.99991 * 17.71280 * 21 19 18 23 23 Si 1.86800 * 119.99756 * 197.70913 * 21 19 18 24 24 H 1.48506 * 109.46742 * 59.99979 * 23 21 19 25 25 H 1.48505 * 109.46999 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47336 * 300.00007 * 23 21 19 27 27 C 1.40715 * 119.51261 * 0.47567 * 18 17 16 28 28 C 1.37609 * 119.74608 * 359.75586 * 27 18 17 29 29 H 1.09004 * 109.46393 * 60.00326 * 1 2 3 30 30 H 1.08997 * 109.47532 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47049 * 300.00981 * 1 2 3 32 32 H 1.09000 * 109.52490 * 303.01835 * 5 3 2 33 33 H 1.09007 * 109.51723 * 63.20471 * 5 3 2 34 34 H 1.08998 * 109.47799 * 177.59286 * 6 5 3 35 35 H 1.08997 * 109.48418 * 297.63116 * 6 5 3 36 36 H 1.09002 * 109.42935 * 301.12132 * 8 7 6 37 37 H 1.08998 * 109.53892 * 181.07728 * 8 7 6 38 38 H 0.96998 * 120.00626 * 84.87383 * 11 9 8 39 39 H 1.08000 * 119.87572 * 359.95664 * 16 15 12 40 40 H 1.07993 * 120.12561 * 179.72165 * 17 16 15 41 41 H 0.97005 * 119.99803 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.12632 * 179.77502 * 27 18 17 43 43 H 1.08002 * 119.87647 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3445 2.0010 0.5107 5 6 2.2288 1.7709 -1.4429 6 6 2.9223 3.1357 -1.4310 7 8 4.1567 3.0350 -0.7181 8 6 4.0120 2.6486 0.6501 9 6 3.3608 1.2649 0.7218 10 1 4.0088 0.5320 0.2413 11 7 3.1556 0.8926 2.1237 12 16 4.2809 -0.0363 2.9069 13 8 4.5623 -1.1339 2.0494 14 8 3.8153 -0.1914 4.2405 15 6 5.7630 0.9116 3.0045 16 6 5.9819 1.7356 4.0977 17 6 7.1336 2.4841 4.1821 18 6 8.0954 2.4031 3.1582 19 6 9.2848 3.1638 3.2365 20 1 9.8205 3.4227 2.3352 21 6 9.7678 3.5810 4.4820 22 7 9.3444 3.0009 5.5755 23 14 11.0172 4.9660 4.5829 24 1 10.4382 6.1989 3.9913 25 1 11.3652 5.2161 6.0048 26 1 12.2408 4.5846 3.8331 27 6 7.8626 1.5633 2.0533 28 6 6.7016 0.8276 1.9876 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 2.8544 1.0490 -1.9678 33 1 1.2665 1.8557 -1.9479 34 1 3.1188 3.4525 -2.4553 35 1 2.2784 3.8664 -0.9416 36 1 3.3832 3.3735 1.1670 37 1 4.9926 2.6138 1.1247 38 1 2.3606 1.1900 2.5933 39 1 5.2437 1.7937 4.8839 40 1 7.3000 3.1287 5.0324 41 1 9.6790 3.2904 6.4388 42 1 8.5925 1.4963 1.2601 43 1 6.5205 0.1827 1.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424736021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -154.431475 kcal Electronic energy + Delta-G solvation = -28621.185961 eV Core-core repulsion = 24564.895071 eV Total energy + Delta-G solvation = -4056.290890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91729 -37.60492 -37.43554 -36.45737 -35.09380 -34.88508 -34.03886 -32.07339 -30.26031 -29.49469 -29.11321 -26.99262 -25.81607 -24.25281 -23.29151 -21.48704 -21.19842 -20.73621 -18.87706 -17.63477 -17.40001 -17.03850 -16.61081 -16.34631 -16.12610 -15.63601 -15.44574 -15.09239 -14.68103 -14.47774 -14.14602 -13.80220 -13.47283 -13.33977 -13.19720 -13.08057 -12.47148 -12.20946 -12.17524 -12.07768 -11.78088 -11.61653 -11.42469 -11.36325 -11.31190 -11.25888 -11.19983 -10.98580 -10.87031 -10.66808 -10.44616 -10.14937 -9.73735 -9.68907 -9.56924 -9.46078 -8.99814 -7.95599 -7.69790 -7.13738 -4.79906 1.24668 2.25709 2.88331 2.89881 2.92597 2.94829 3.44630 3.60821 3.66807 3.96633 4.24732 4.47562 4.55562 4.61871 4.76444 4.85897 5.08355 5.10971 5.15049 5.19506 5.24929 5.33922 5.38262 5.47512 5.52192 5.62668 5.70645 5.85378 6.03812 6.08559 6.13635 6.18200 6.69252 6.71858 6.91892 7.02298 7.04514 7.12619 7.26456 7.34636 7.43538 7.64073 7.77369 7.97398 8.32196 8.51712 8.65151 9.77537 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003528 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.038732 B = 7934.684066 C = 9064.692123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.085 3.915 4 H 0.067 0.933 5 C -0.177 4.177 6 C 0.059 3.941 7 O -0.371 6.371 8 C 0.043 3.957 9 C 0.128 3.872 10 H 0.108 0.892 11 N -1.113 6.113 12 S 2.692 3.308 13 O -0.979 6.979 14 O -0.984 6.984 15 C -0.791 4.791 16 C -0.014 4.014 17 C -0.184 4.184 18 C 0.141 3.859 19 C -0.434 4.434 20 H 0.088 0.912 21 C 0.072 3.928 22 N -0.764 5.764 23 Si 0.917 3.083 24 H -0.259 1.259 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.235 4.235 28 C 0.001 3.999 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.122 0.878 38 H 0.409 0.591 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.290 0.710 42 H 0.100 0.900 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 3.094 -9.020 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.288 6.288 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.216 4.216 6 C -0.018 4.018 7 O -0.288 6.288 8 C -0.036 4.036 9 C 0.020 3.980 10 H 0.126 0.874 11 N -0.868 5.868 12 S 2.791 3.209 13 O -0.969 6.969 14 O -0.974 6.974 15 C -0.888 4.888 16 C -0.034 4.034 17 C -0.204 4.204 18 C 0.137 3.863 19 C -0.462 4.462 20 H 0.106 0.894 21 C -0.150 4.150 22 N -0.386 5.386 23 Si 0.741 3.259 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.185 1.185 27 C -0.256 4.256 28 C -0.019 4.019 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.241 0.759 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.753 1.998 -8.626 15.525 hybrid contribution 0.121 1.420 0.416 1.485 sum -12.632 3.419 -8.210 15.448 Atomic orbital electron populations 1.22812 0.81443 1.02860 0.99679 1.88045 1.19209 1.26703 1.94863 1.22442 0.94499 0.85431 0.95114 0.91535 1.22782 1.02261 0.99129 0.97424 1.22589 0.86456 0.94983 0.97799 1.88038 1.29036 1.88755 1.22955 1.23354 1.03915 0.93417 0.82904 1.21461 0.96375 0.98491 0.81694 0.87411 1.55697 1.37968 1.73256 1.19879 1.01311 0.73634 0.73759 0.72229 1.93494 1.85295 1.50196 1.67957 1.93495 1.81683 1.86035 1.36211 1.29143 1.21531 1.29819 1.08265 1.20236 0.96835 0.92783 0.93558 1.21333 0.93707 1.03625 1.01736 1.17844 0.91319 0.86954 0.90199 1.19933 1.06134 1.26367 0.93723 0.89421 1.26147 0.97415 0.96376 0.95103 1.69819 1.35624 1.33416 0.99762 0.86194 0.80334 0.80948 0.78464 1.18351 1.19931 1.18541 1.21024 0.99037 1.03578 1.01922 1.20168 0.92831 0.94470 0.94463 0.94264 0.89546 0.94057 0.89532 0.90510 0.88378 0.93134 0.92485 0.86056 0.75885 0.87934 0.86055 0.89880 0.88137 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.83 101.05 1.09 1.35 16 2 O -0.37 -4.75 10.28 -35.23 -0.36 -5.11 16 3 C 0.08 0.97 2.26 -26.54 -0.06 0.91 16 4 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 5 C -0.18 -1.72 5.77 -26.59 -0.15 -1.88 16 6 C 0.06 0.58 6.85 37.20 0.25 0.83 16 7 O -0.37 -5.10 10.76 -35.23 -0.38 -5.48 16 8 C 0.04 0.60 6.46 37.21 0.24 0.84 16 9 C 0.13 1.81 2.67 -67.79 -0.18 1.63 16 10 H 0.11 1.72 7.51 -51.93 -0.39 1.33 16 11 N -1.11 -16.61 5.40 -4.77 -0.03 -16.64 16 12 S 2.69 52.50 5.71 -107.50 -0.61 51.88 16 13 O -0.98 -21.48 16.60 -57.17 -0.95 -22.43 16 14 O -0.98 -21.33 17.26 -57.17 -0.99 -22.32 16 15 C -0.79 -17.04 5.16 -39.29 -0.20 -17.24 16 16 C -0.01 -0.31 9.49 -39.66 -0.38 -0.69 16 17 C -0.18 -4.50 8.70 -38.87 -0.34 -4.84 16 18 C 0.14 3.49 5.57 -106.82 -0.60 2.90 16 19 C -0.43 -10.53 9.06 -37.74 -0.34 -10.87 16 20 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 21 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 22 N -0.76 -18.21 10.95 55.55 0.61 -17.60 16 23 Si 0.92 16.91 29.59 -169.99 -5.03 11.88 16 24 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 25 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 27 C -0.24 -5.45 9.80 -38.88 -0.38 -5.83 16 28 C 0.00 0.02 8.52 -39.66 -0.34 -0.32 16 29 H 0.04 0.28 8.00 -51.93 -0.42 -0.13 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.58 8.00 -51.92 -0.42 0.17 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.12 1.99 6.22 -51.93 -0.32 1.67 16 38 H 0.41 5.03 8.84 -34.47 -0.30 4.72 16 39 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 40 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 41 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 42 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -30.95 364.89 -9.59 -40.53 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.88 Total: 11.42 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: -1.47 Total: -31.64 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.58 Total: -34.24 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -2.68 Total: -55.33 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.61 Total: 51.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.95 -9.59 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424736021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.899 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds