Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00021 * 2 1 4 4 C 1.52999 * 109.46647 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47350 * 65.00084 * 4 3 2 6 6 C 1.37102 * 119.99904 * 270.00053 * 5 4 3 7 7 H 1.08000 * 119.99950 * 142.40686 * 6 5 4 8 8 C 1.38948 * 119.99820 * 322.40061 * 6 5 4 9 9 N 1.31406 * 120.00277 * 340.73933 * 8 6 5 10 10 Si 1.86800 * 119.99663 * 160.73599 * 8 6 5 11 11 H 1.48495 * 109.47380 * 60.00235 * 10 8 6 12 12 H 1.48504 * 109.47114 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47107 * 299.99915 * 10 8 6 14 14 C 1.34778 * 119.99869 * 89.99558 * 5 4 3 15 15 O 1.21286 * 120.00161 * 5.01517 * 14 5 4 16 16 C 1.50702 * 119.99793 * 185.01181 * 14 5 4 17 17 C 1.50695 * 109.47190 * 183.05194 * 16 14 5 18 18 C 1.38255 * 120.00115 * 265.89791 * 17 16 14 19 19 C 1.38210 * 120.00365 * 180.02562 * 18 17 16 20 20 C 1.38257 * 119.99860 * 359.95758 * 19 18 17 21 21 C 1.38213 * 120.00303 * 359.97438 * 20 19 18 22 22 C 1.38220 * 120.00217 * 86.06569 * 17 16 14 23 23 S 1.76194 * 119.99934 * 0.04404 * 22 17 16 24 24 C 1.81406 * 104.45051 * 68.72072 * 23 22 17 25 25 O 1.42095 * 104.27857 * 184.79263 * 23 22 17 26 26 O 1.42103 * 104.27998 * 312.65066 * 23 22 17 27 27 H 1.09006 * 109.46628 * 59.99644 * 1 2 3 28 28 H 1.08996 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46929 * 300.00194 * 1 2 3 30 30 H 1.08995 * 109.47019 * 60.00360 * 3 2 1 31 31 H 1.09000 * 109.47370 * 299.99611 * 3 2 1 32 32 H 1.09001 * 109.47253 * 305.00198 * 4 3 2 33 33 H 1.09003 * 109.46929 * 184.99780 * 4 3 2 34 34 H 0.97003 * 120.00364 * 185.02915 * 9 8 6 35 35 H 1.08996 * 109.47418 * 63.04860 * 16 14 5 36 36 H 1.09006 * 109.46907 * 303.05304 * 16 14 5 37 37 H 1.08001 * 119.99683 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.00698 * 179.97438 * 19 18 17 39 39 H 1.07999 * 119.99934 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.00535 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.46737 * 67.49096 * 24 23 22 42 42 H 1.08997 * 109.47161 * 187.48816 * 24 23 22 43 43 H 1.08994 * 109.47302 * 307.49547 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0979 -0.7993 -1.3345 7 1 3.8230 -1.3110 -2.2450 8 6 4.5745 -1.5224 -0.2479 9 7 5.2538 -0.9147 0.6987 10 14 4.2496 -3.3583 -0.1329 11 1 4.8471 -4.0414 -1.3082 12 1 4.8581 -3.8916 1.1124 13 1 2.7848 -3.6013 -0.1108 14 6 4.2634 1.3327 -2.3200 15 8 4.2444 2.5413 -2.2204 16 6 4.6078 0.6908 -3.6392 17 6 4.9570 1.7599 -4.6422 18 6 3.9852 2.2545 -5.4920 19 6 4.3055 3.2347 -6.4123 20 6 5.5978 3.7212 -6.4824 21 6 6.5691 3.2278 -5.6319 22 6 6.2498 2.2436 -4.7149 23 16 7.4897 1.6093 -3.6356 24 6 7.7481 -0.0965 -4.1961 25 8 8.6348 2.4039 -3.9121 26 8 6.8792 1.6255 -2.3525 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8464 -0.8900 32 1 3.8508 0.5683 0.8427 33 1 3.9786 2.1764 0.0902 34 1 5.6488 -1.4301 1.4194 35 1 3.7522 0.1198 -3.9998 36 1 5.4600 0.0239 -3.5074 37 1 2.9756 1.8749 -5.4368 38 1 3.5465 3.6208 -7.0764 39 1 5.8480 4.4875 -7.2011 40 1 7.5784 3.6082 -5.6863 41 1 8.2022 -0.0885 -5.1869 42 1 8.4079 -0.6122 -3.4983 43 1 6.7898 -0.6138 -4.2398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642106537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -96.862581 kcal Electronic energy + Delta-G solvation = -29375.973596 eV Core-core repulsion = 25322.179080 eV Total energy + Delta-G solvation = -4053.794516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.48028 -38.18571 -36.92580 -36.54126 -35.39686 -34.50887 -32.64032 -31.41933 -31.03514 -29.38003 -29.25920 -27.00652 -25.69160 -24.49415 -22.99812 -22.34980 -21.10431 -18.99368 -18.59846 -17.39320 -16.74938 -16.20766 -16.03269 -15.66764 -15.52882 -15.27251 -15.17995 -14.56855 -14.36933 -14.33129 -14.15991 -13.88761 -13.49478 -13.12078 -13.05855 -12.85646 -12.65819 -12.22905 -11.97170 -11.88618 -11.62398 -11.55797 -11.38000 -11.22455 -11.07948 -11.00503 -10.88199 -10.75354 -10.54981 -10.51742 -10.31212 -10.14033 -9.94025 -9.10956 -9.02067 -8.89335 -8.70375 -8.21517 -7.27721 -6.15534 -3.84874 0.43454 1.10794 1.52133 3.20557 3.24942 3.30040 3.34585 3.67069 4.00889 4.23721 4.28785 4.56609 4.59493 4.79392 4.94752 4.99241 5.04962 5.10877 5.20716 5.26059 5.41976 5.57406 5.70673 5.74151 5.76097 5.81068 5.97937 6.00829 6.03760 6.08095 6.12332 6.23664 6.32197 6.44819 6.50102 6.52706 6.62417 6.91615 7.06769 7.44402 7.62451 7.93349 8.18952 8.52174 9.27506 9.70511 10.13818 10.86799 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.004976 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.727263 B = 5625.310369 C = 6789.635391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.427 5.427 6 C -0.327 4.327 7 H 0.082 0.918 8 C 0.052 3.948 9 N -0.858 5.858 10 Si 0.910 3.090 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.502 3.498 15 O -0.593 6.593 16 C -0.120 4.120 17 C 0.051 3.949 18 C -0.132 4.132 19 C -0.069 4.069 20 C -0.154 4.154 21 C -0.025 4.025 22 C -0.646 4.646 23 S 2.483 3.517 24 C -0.660 4.660 25 O -0.954 6.954 26 O -0.884 6.884 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 1.034 -11.140 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.025 4.025 4 C -0.010 4.010 5 N -0.145 5.145 6 C -0.455 4.455 7 H 0.099 0.901 8 C -0.154 4.154 9 N -0.495 5.495 10 Si 0.737 3.263 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.290 3.710 15 O -0.478 6.478 16 C -0.160 4.160 17 C 0.050 3.950 18 C -0.151 4.151 19 C -0.087 4.087 20 C -0.172 4.172 21 C -0.044 4.044 22 C -0.732 4.732 23 S 2.661 3.339 24 C -0.808 4.808 25 O -0.952 6.952 26 O -0.881 6.881 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.717 1.841 -10.169 10.359 hybrid contribution -0.983 -1.155 -0.592 1.628 sum -1.700 0.687 -10.760 10.916 Atomic orbital electron populations 1.22636 0.83796 1.01578 0.98682 1.88177 1.17013 1.27737 1.94974 1.23089 0.96960 0.84189 0.98221 1.21467 0.88578 0.99470 0.91511 1.43021 1.56794 1.05906 1.08740 1.19135 1.43986 0.80890 1.01494 0.90083 1.25223 0.94565 0.99297 0.96323 1.69817 1.30167 1.36199 1.13337 0.86305 0.79085 0.83463 0.77466 1.20285 1.21203 1.19710 1.19400 0.79615 0.86576 0.85416 1.90520 1.57549 1.14417 1.85317 1.21015 1.04353 0.96328 0.94264 1.19285 0.91323 0.92931 0.91464 1.21090 0.99132 0.98350 0.96493 1.21329 0.96317 0.94516 0.96514 1.21146 0.93645 1.01585 1.00869 1.20882 1.00021 0.92273 0.91210 1.30392 1.13020 1.12146 1.17678 1.05819 0.74641 0.77461 0.75960 1.30403 1.12546 1.25040 1.12860 1.93507 1.49625 1.66185 1.85851 1.93814 1.74912 1.85263 1.34133 0.95161 0.90564 0.95286 0.94472 0.94605 0.86607 0.90904 0.92208 0.88204 0.88825 0.85519 0.85786 0.85664 0.84271 0.85607 0.84834 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.78 10.18 -35.23 -0.36 -8.13 16 3 C 0.05 1.13 6.28 37.16 0.23 1.37 16 4 C 0.11 2.82 5.47 -4.04 -0.02 2.80 16 5 N -0.43 -10.85 2.50 -114.81 -0.29 -11.14 16 6 C -0.33 -8.24 8.08 -14.93 -0.12 -8.36 16 7 H 0.08 1.90 7.17 -52.49 -0.38 1.53 16 8 C 0.05 1.32 5.01 -17.47 -0.09 1.23 16 9 N -0.86 -23.16 11.32 55.50 0.63 -22.53 16 10 Si 0.91 19.80 29.60 -169.99 -5.03 14.77 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.50 12.23 5.49 -10.98 -0.06 12.17 16 15 O -0.59 -15.90 15.19 -6.57 -0.10 -16.00 16 16 C -0.12 -2.31 3.73 -29.04 -0.11 -2.42 16 17 C 0.05 0.90 4.36 -104.62 -0.46 0.45 16 18 C -0.13 -2.02 9.69 -39.59 -0.38 -2.40 16 19 C -0.07 -0.89 10.05 -39.58 -0.40 -1.29 16 20 C -0.15 -1.99 10.05 -39.58 -0.40 -2.39 16 21 C -0.02 -0.37 9.50 -39.58 -0.38 -0.75 16 22 C -0.65 -10.98 5.60 -39.58 -0.22 -11.21 16 23 S 2.48 42.82 5.16 -107.50 -0.55 42.27 16 24 C -0.66 -8.17 10.44 101.05 1.06 -7.12 16 25 O -0.95 -17.51 16.75 -57.54 -0.96 -18.48 16 26 O -0.88 -20.13 14.08 -63.36 -0.89 -21.03 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 3.08 5.43 -51.93 -0.28 2.80 16 33 H 0.07 1.87 7.36 -51.93 -0.38 1.49 16 34 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 35 H 0.10 1.69 7.85 -51.93 -0.41 1.28 16 36 H 0.09 1.69 3.90 -51.93 -0.20 1.49 16 37 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.14 1.87 7.22 -52.49 -0.38 1.49 16 41 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.14 1.64 5.86 -51.93 -0.30 1.34 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -35.98 365.13 -7.98 -43.97 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.70 Total: 7.12 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.23 Total: -16.32 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.34 Total: -33.67 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -2.31 Total: -63.64 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: 42.82 SS G_CDS: -0.55 Total: 42.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.98 -7.98 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642106537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.897 kcal (2) G-P(sol) polarization free energy of solvation -35.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds