Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00021 * 2 1 4 4 C 1.52999 * 109.46647 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47350 * 65.00084 * 4 3 2 6 6 C 1.37102 * 119.99904 * 270.00053 * 5 4 3 7 7 H 1.08000 * 119.99950 * 142.40686 * 6 5 4 8 8 C 1.38948 * 119.99820 * 322.40061 * 6 5 4 9 9 N 1.31406 * 120.00277 * 340.73933 * 8 6 5 10 10 Si 1.86800 * 119.99663 * 160.73599 * 8 6 5 11 11 H 1.48495 * 109.47380 * 60.00235 * 10 8 6 12 12 H 1.48504 * 109.47114 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47107 * 299.99915 * 10 8 6 14 14 C 1.34778 * 119.99869 * 89.99558 * 5 4 3 15 15 O 1.21286 * 120.00161 * 5.01517 * 14 5 4 16 16 C 1.50702 * 119.99793 * 185.01181 * 14 5 4 17 17 C 1.50695 * 109.47190 * 183.05194 * 16 14 5 18 18 C 1.38255 * 120.00115 * 265.89791 * 17 16 14 19 19 C 1.38210 * 120.00365 * 180.02562 * 18 17 16 20 20 C 1.38257 * 119.99860 * 359.95758 * 19 18 17 21 21 C 1.38213 * 120.00303 * 359.97438 * 20 19 18 22 22 C 1.38220 * 120.00217 * 86.06569 * 17 16 14 23 23 S 1.76194 * 119.99934 * 0.04404 * 22 17 16 24 24 C 1.81406 * 104.45051 * 68.72072 * 23 22 17 25 25 O 1.42095 * 104.27857 * 184.79263 * 23 22 17 26 26 O 1.42103 * 104.27998 * 312.65066 * 23 22 17 27 27 H 1.09006 * 109.46628 * 59.99644 * 1 2 3 28 28 H 1.08996 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46929 * 300.00194 * 1 2 3 30 30 H 1.08995 * 109.47019 * 60.00360 * 3 2 1 31 31 H 1.09000 * 109.47370 * 299.99611 * 3 2 1 32 32 H 1.09001 * 109.47253 * 305.00198 * 4 3 2 33 33 H 1.09003 * 109.46929 * 184.99780 * 4 3 2 34 34 H 0.97003 * 120.00364 * 185.02915 * 9 8 6 35 35 H 1.08996 * 109.47418 * 63.04860 * 16 14 5 36 36 H 1.09006 * 109.46907 * 303.05304 * 16 14 5 37 37 H 1.08001 * 119.99683 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.00698 * 179.97438 * 19 18 17 39 39 H 1.07999 * 119.99934 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.00535 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.46737 * 67.49096 * 24 23 22 42 42 H 1.08997 * 109.47161 * 187.48816 * 24 23 22 43 43 H 1.08994 * 109.47302 * 307.49547 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0979 -0.7993 -1.3345 7 1 3.8230 -1.3110 -2.2450 8 6 4.5745 -1.5224 -0.2479 9 7 5.2538 -0.9147 0.6987 10 14 4.2496 -3.3583 -0.1329 11 1 4.8471 -4.0414 -1.3082 12 1 4.8581 -3.8916 1.1124 13 1 2.7848 -3.6013 -0.1108 14 6 4.2634 1.3327 -2.3200 15 8 4.2444 2.5413 -2.2204 16 6 4.6078 0.6908 -3.6392 17 6 4.9570 1.7599 -4.6422 18 6 3.9852 2.2545 -5.4920 19 6 4.3055 3.2347 -6.4123 20 6 5.5978 3.7212 -6.4824 21 6 6.5691 3.2278 -5.6319 22 6 6.2498 2.2436 -4.7149 23 16 7.4897 1.6093 -3.6356 24 6 7.7481 -0.0965 -4.1961 25 8 8.6348 2.4039 -3.9121 26 8 6.8792 1.6255 -2.3525 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8464 -0.8900 32 1 3.8508 0.5683 0.8427 33 1 3.9786 2.1764 0.0902 34 1 5.6488 -1.4301 1.4194 35 1 3.7522 0.1198 -3.9998 36 1 5.4600 0.0239 -3.5074 37 1 2.9756 1.8749 -5.4368 38 1 3.5465 3.6208 -7.0764 39 1 5.8480 4.4875 -7.2011 40 1 7.5784 3.6082 -5.6863 41 1 8.2022 -0.0885 -5.1869 42 1 8.4079 -0.6122 -3.4983 43 1 6.7898 -0.6138 -4.2398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642106537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -122.738553 kcal Electronic energy + Delta-G solvation = -29377.095662 eV Core-core repulsion = 25322.179080 eV Total energy + Delta-G solvation = -4054.916582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90454 -39.73853 -38.49464 -38.00920 -36.85115 -36.38990 -33.97808 -33.35422 -32.15857 -31.04667 -30.35153 -28.40126 -27.19546 -26.32564 -24.15810 -23.87416 -22.53970 -20.83314 -19.93271 -18.86363 -18.30061 -17.90418 -17.40063 -17.02567 -16.97439 -16.89772 -16.56015 -16.10994 -15.96922 -15.84236 -15.54177 -15.34065 -14.99249 -14.54323 -14.26667 -14.03747 -13.82954 -13.61867 -13.48728 -13.29244 -13.14261 -13.00456 -12.95785 -12.81252 -12.76221 -12.47949 -12.44262 -12.35687 -12.12549 -12.05121 -11.86663 -11.73140 -11.37309 -10.88740 -10.49111 -10.30116 -10.20577 -9.71260 -9.22594 -8.07194 -5.82193 -0.80871 -0.05805 0.37732 1.48431 1.57512 1.63114 1.98439 2.21868 2.46081 2.55299 2.97477 3.04597 3.19357 3.31433 3.38356 3.67522 3.84648 3.98625 4.09959 4.17107 4.26342 4.29823 4.34407 4.42694 4.54043 4.56853 4.57960 4.63698 4.67969 4.70899 4.81968 4.84870 4.95284 4.96368 5.11149 5.22050 5.41008 5.45460 5.46949 5.67016 5.97874 6.22876 6.46773 6.58528 7.34378 7.82001 8.25623 8.96364 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.004976 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.727263 B = 5625.310369 C = 6789.635391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.069 3.931 4 C 0.110 3.890 5 N -0.441 5.441 6 C -0.333 4.333 7 H 0.098 0.902 8 C 0.006 3.994 9 N -0.898 5.898 10 Si 0.973 3.027 11 H -0.256 1.256 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.493 3.507 15 O -0.627 6.627 16 C -0.115 4.115 17 C 0.024 3.976 18 C -0.143 4.143 19 C -0.063 4.063 20 C -0.145 4.145 21 C -0.041 4.041 22 C -0.657 4.657 23 S 2.470 3.530 24 C -0.634 4.634 25 O -0.980 6.980 26 O -0.956 6.956 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -0.163 -14.156 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.009 4.009 4 C -0.014 4.014 5 N -0.159 5.159 6 C -0.460 4.460 7 H 0.115 0.885 8 C -0.195 4.195 9 N -0.537 5.537 10 Si 0.798 3.202 11 H -0.181 1.181 12 H -0.218 1.218 13 H -0.198 1.198 14 C 0.283 3.717 15 O -0.515 6.515 16 C -0.155 4.155 17 C 0.023 3.977 18 C -0.161 4.161 19 C -0.080 4.080 20 C -0.164 4.164 21 C -0.060 4.060 22 C -0.745 4.745 23 S 2.655 3.345 24 C -0.787 4.787 25 O -0.977 6.977 26 O -0.953 6.953 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.167 0.833 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.926 0.669 -13.182 13.339 hybrid contribution -0.617 -0.712 0.253 0.975 sum -2.543 -0.043 -12.929 13.177 Atomic orbital electron populations 1.22885 0.80875 1.03234 1.00190 1.88101 1.20209 1.27505 1.95251 1.22784 0.94454 0.84642 0.99041 1.21336 0.91245 0.97522 0.91331 1.43271 1.57266 1.06361 1.09006 1.19526 1.43404 0.80942 1.02149 0.88479 1.26039 0.94152 1.03455 0.95902 1.69974 1.31702 1.37813 1.14180 0.85308 0.78647 0.78482 0.77788 1.18068 1.21806 1.19752 1.20207 0.78328 0.86325 0.86875 1.90470 1.58721 1.16052 1.86232 1.20958 1.05388 0.97105 0.92013 1.19234 0.92259 0.93864 0.92357 1.21396 0.99277 0.98889 0.96563 1.21799 0.97279 0.93066 0.95890 1.21634 0.93075 1.01325 1.00320 1.21176 1.01269 0.92070 0.91504 1.30209 1.12695 1.13420 1.18177 1.05694 0.74082 0.79508 0.75206 1.30188 1.13829 1.19445 1.15260 1.93459 1.50065 1.68258 1.85936 1.93748 1.76083 1.87134 1.38338 0.93991 0.88882 0.93355 0.92187 0.95016 0.88729 0.93462 0.92503 0.86129 0.88164 0.84197 0.81805 0.81878 0.83462 0.81531 0.83348 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.39 -16.72 10.18 -148.98 -1.52 -18.24 16 3 C 0.07 2.96 6.28 71.98 0.45 3.42 16 4 C 0.11 5.75 5.47 86.38 0.47 6.22 16 5 N -0.44 -23.14 2.50 -635.53 -1.59 -24.73 16 6 C -0.33 -16.89 8.08 84.04 0.68 -16.21 16 7 H 0.10 4.48 7.17 -2.91 -0.02 4.46 16 8 C 0.01 0.33 5.01 84.93 0.43 0.75 16 9 N -0.90 -50.30 11.32 21.66 0.25 -50.05 16 10 Si 0.97 40.38 29.60 68.60 2.03 42.41 16 11 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 12 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 14 C 0.49 24.74 5.49 87.66 0.48 25.22 16 15 O -0.63 -35.18 15.19 8.54 0.13 -35.05 16 16 C -0.12 -4.44 3.73 29.10 0.11 -4.33 16 17 C 0.02 0.84 4.36 -19.87 -0.09 0.75 16 18 C -0.14 -4.07 9.69 22.27 0.22 -3.85 16 19 C -0.06 -1.41 10.05 22.27 0.22 -1.18 16 20 C -0.14 -3.28 10.05 22.27 0.22 -3.06 16 21 C -0.04 -1.18 9.50 22.27 0.21 -0.97 16 22 C -0.66 -22.13 5.60 22.27 0.12 -22.00 16 23 S 2.47 87.01 5.16 -56.49 -0.29 86.72 16 24 C -0.63 -14.50 10.44 113.37 1.18 -13.31 16 25 O -0.98 -36.87 16.75 -127.65 -2.14 -39.00 16 26 O -0.96 -46.17 14.08 -122.09 -1.72 -47.89 16 27 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 5.34 5.43 -2.39 -0.01 5.32 16 33 H 0.05 2.62 7.36 -2.39 -0.02 2.60 16 34 H 0.27 14.15 8.32 -92.71 -0.77 13.38 16 35 H 0.12 3.96 7.85 -2.39 -0.02 3.94 16 36 H 0.10 3.62 3.90 -2.38 -0.01 3.61 16 37 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.15 3.83 7.22 -2.91 -0.02 3.81 16 41 H 0.17 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.15 3.18 5.86 -2.39 -0.01 3.17 16 Total: -1.00 -83.21 365.13 2.14 -81.07 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 1.03 Total: 31.33 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 5.96 Total: -26.57 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.34 Total: -74.78 kcal Atomic # 8 Polarization: -134.93 SS G_CDS: -5.24 Total: -140.17 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 87.01 SS G_CDS: -0.29 Total: 86.72 kcal Total: -83.21 2.14 -81.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642106537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.673 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds