Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 108.58129 * 2 1 4 4 O 1.42101 * 108.58084 * 228.97213 * 2 1 3 5 5 C 1.81400 * 101.92183 * 114.48461 * 2 1 3 6 6 C 1.53009 * 109.47201 * 179.97438 * 5 2 1 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09001 * 109.47156 * 305.51284 * 1 2 3 28 28 H 1.08997 * 109.47159 * 65.51514 * 1 2 3 29 29 H 1.08997 * 109.46613 * 185.51548 * 1 2 3 30 30 H 1.08993 * 109.47181 * 60.00292 * 5 2 1 31 31 H 1.08998 * 109.47132 * 299.99659 * 5 2 1 32 32 H 1.09002 * 109.46549 * 60.00085 * 6 5 2 33 33 H 1.08998 * 109.47227 * 300.00523 * 6 5 2 34 34 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 35 35 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 36 36 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 38 38 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7056 -0.8195 1.7980 7 6 4.0216 -1.4393 3.1606 8 6 5.5155 -1.5225 3.3402 9 8 6.2547 -1.1248 2.4648 10 7 6.0303 -2.0390 4.4738 11 6 7.4826 -2.1194 4.6487 12 6 7.7939 -2.7312 5.9902 13 6 7.9375 -1.9212 7.1023 14 6 8.2236 -2.4787 8.3350 15 6 8.3605 -3.8474 8.4604 16 6 8.2226 -4.6627 7.3449 17 8 8.3625 -6.0077 7.4640 18 6 8.7536 -6.4785 8.6653 19 1 8.8616 -5.8029 9.5010 20 6 9.0171 -7.8300 8.8279 21 7 8.8860 -8.6529 7.8099 22 14 9.5596 -8.4822 10.4922 23 1 8.5085 -8.1976 11.5019 24 1 9.7764 -9.9485 10.4026 25 1 10.8256 -7.8188 10.8951 26 6 7.9358 -4.0995 6.1080 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3632 -1.0229 0.0988 30 1 1.7611 -1.7368 1.6665 31 1 1.7611 -0.1170 2.4042 32 1 4.1335 0.1817 1.7465 33 1 4.1329 -1.4383 1.0089 34 1 3.5934 -2.4405 3.2124 35 1 3.5943 -0.8202 3.9494 36 1 5.4390 -2.3575 5.1738 37 1 7.9106 -1.1182 4.5973 38 1 7.9098 -2.7381 3.8596 39 1 7.8258 -0.8511 7.0077 40 1 8.3356 -1.8437 9.2013 41 1 8.5790 -4.2826 9.4244 42 1 9.0707 -9.5983 7.9236 43 1 7.8243 -4.7313 5.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649702112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -118.576039 kcal Electronic energy + Delta-G solvation = -25665.943581 eV Core-core repulsion = 21611.207499 eV Total energy + Delta-G solvation = -4054.736082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.88956 -39.07146 -37.36159 -36.89915 -36.41596 -35.08923 -34.48119 -32.37628 -31.04012 -30.19472 -29.32111 -28.63755 -25.91577 -25.09906 -22.69124 -21.75261 -20.86111 -20.41043 -19.28395 -18.03856 -17.44169 -17.01046 -16.80289 -16.78550 -16.17732 -15.95903 -15.72273 -15.24641 -14.90802 -14.46319 -14.39786 -13.91776 -13.86783 -13.71492 -13.66847 -13.52484 -13.05978 -12.96583 -12.60114 -12.45310 -12.44561 -12.36330 -12.27531 -12.08706 -11.70771 -11.47078 -11.41771 -11.30642 -10.97311 -10.94177 -10.86848 -10.75235 -10.52703 -9.93513 -9.45646 -9.04091 -8.92356 -8.28939 -7.37496 -6.52551 -4.12352 -0.47891 1.85515 2.22242 2.30191 2.59482 3.06987 3.08632 3.12085 3.12667 3.37619 3.54730 3.89451 4.13125 4.17782 4.28007 4.46731 4.50903 4.51250 4.83643 4.86788 4.95201 5.03531 5.05063 5.13144 5.21938 5.27610 5.49822 5.55194 5.70370 5.72839 5.80284 5.88956 6.03248 6.20686 6.42466 6.51069 6.77095 6.95015 7.13980 7.22677 7.31256 7.50162 7.66913 7.91248 8.18792 8.92557 9.60662 10.65004 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.001638 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.212074 B =17086.379584 C =17768.249265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.421 3.579 3 O -0.938 6.938 4 O -0.937 6.937 5 C -0.612 4.612 6 C -0.098 4.098 7 C -0.134 4.134 8 C 0.508 3.492 9 O -0.544 6.544 10 N -0.721 5.721 11 C 0.166 3.834 12 C -0.073 4.073 13 C -0.196 4.196 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.171 4.171 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.271 0.729 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.114 15.283 -7.816 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.603 3.397 3 O -0.935 6.935 4 O -0.934 6.934 5 C -0.741 4.741 6 C -0.136 4.136 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.421 6.421 10 N -0.372 5.372 11 C 0.044 3.956 12 C -0.074 4.074 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.471 4.471 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.191 4.191 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.238 0.762 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.007 15.412 -9.332 24.101 hybrid contribution -0.663 -0.851 2.068 2.332 sum -16.670 14.562 -7.264 23.296 Atomic orbital electron populations 1.30298 1.27083 1.11561 1.11791 1.07853 0.78158 0.75899 0.77801 1.93614 1.78882 1.34506 1.86500 1.93620 1.78842 1.66979 1.53939 1.30372 1.06307 1.14148 1.23279 1.21061 0.89768 1.04167 0.98649 1.21618 0.93262 1.03835 0.98755 1.20614 0.90752 0.77398 0.81843 1.90721 1.61645 1.48133 1.41643 1.46160 1.08298 1.63311 1.19430 1.20167 0.80080 1.00758 0.94614 1.19267 1.01491 0.92823 0.93816 1.20479 1.10009 0.98322 0.92726 1.20748 0.97688 0.94336 0.96640 1.21241 1.10122 0.93708 0.99469 1.19327 0.93001 0.85048 0.93012 1.83981 1.73918 1.14948 1.35038 1.21276 1.46858 0.92919 0.85998 0.89077 1.25300 0.96647 0.94970 0.99530 1.70022 1.44697 1.04341 1.30426 0.85774 0.79335 0.78186 0.80097 1.19490 1.20227 1.19454 1.20087 1.09430 0.93636 0.95955 0.85361 0.85277 0.85315 0.84724 0.84796 0.89273 0.89185 0.88277 0.88410 0.76182 0.90900 0.90800 0.87512 0.87272 0.85459 0.91859 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.35 10.62 101.05 1.07 -0.28 16 2 S 2.42 14.19 5.36 -107.50 -0.58 13.62 16 3 O -0.94 -9.43 18.10 -57.83 -1.05 -10.48 16 4 O -0.94 -9.65 18.10 -57.83 -1.05 -10.69 16 5 C -0.61 -2.39 5.81 37.16 0.22 -2.17 16 6 C -0.10 -0.79 4.51 -26.73 -0.12 -0.91 16 7 C -0.13 -1.01 5.70 -27.88 -0.16 -1.17 16 8 C 0.51 6.18 7.83 -10.98 -0.09 6.10 16 9 O -0.54 -8.81 15.98 5.56 0.09 -8.72 16 10 N -0.72 -8.63 5.55 -61.47 -0.34 -8.97 16 11 C 0.17 2.36 5.80 -5.19 -0.03 2.33 16 12 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 13 C -0.20 -3.10 9.70 -39.53 -0.38 -3.48 16 14 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 15 C -0.23 -4.61 9.17 -39.40 -0.36 -4.97 16 16 C 0.15 3.43 6.65 -39.11 -0.26 3.17 16 17 O -0.18 -4.82 9.76 0.05 0.00 -4.82 16 18 C -0.39 -10.65 9.49 30.89 0.29 -10.35 16 19 H 0.09 2.26 5.21 -52.49 -0.27 1.98 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 22 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.17 -3.37 9.65 -39.39 -0.38 -3.75 16 27 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 28 H 0.13 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.13 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.40 4.11 8.46 -40.82 -0.35 3.76 16 37 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -38.40 384.23 -8.59 -47.00 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.96 Total: 4.21 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.24 Total: -17.95 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.42 Total: -32.83 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -2.00 Total: -34.71 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 14.19 SS G_CDS: -0.58 Total: 13.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.40 -8.59 -47.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.581 kcal (2) G-P(sol) polarization free energy of solvation -38.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds