Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 108.58129 * 2 1 4 4 O 1.42101 * 108.58084 * 228.97213 * 2 1 3 5 5 C 1.81400 * 101.92183 * 114.48461 * 2 1 3 6 6 C 1.53009 * 109.47201 * 179.97438 * 5 2 1 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09001 * 109.47156 * 305.51284 * 1 2 3 28 28 H 1.08997 * 109.47159 * 65.51514 * 1 2 3 29 29 H 1.08997 * 109.46613 * 185.51548 * 1 2 3 30 30 H 1.08993 * 109.47181 * 60.00292 * 5 2 1 31 31 H 1.08998 * 109.47132 * 299.99659 * 5 2 1 32 32 H 1.09002 * 109.46549 * 60.00085 * 6 5 2 33 33 H 1.08998 * 109.47227 * 300.00523 * 6 5 2 34 34 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 35 35 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 36 36 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 38 38 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7056 -0.8195 1.7980 7 6 4.0216 -1.4393 3.1606 8 6 5.5155 -1.5225 3.3402 9 8 6.2547 -1.1248 2.4648 10 7 6.0303 -2.0390 4.4738 11 6 7.4826 -2.1194 4.6487 12 6 7.7939 -2.7312 5.9902 13 6 7.9375 -1.9212 7.1023 14 6 8.2236 -2.4787 8.3350 15 6 8.3605 -3.8474 8.4604 16 6 8.2226 -4.6627 7.3449 17 8 8.3625 -6.0077 7.4640 18 6 8.7536 -6.4785 8.6653 19 1 8.8616 -5.8029 9.5010 20 6 9.0171 -7.8300 8.8279 21 7 8.8860 -8.6529 7.8099 22 14 9.5596 -8.4822 10.4922 23 1 8.5085 -8.1976 11.5019 24 1 9.7764 -9.9485 10.4026 25 1 10.8256 -7.8188 10.8951 26 6 7.9358 -4.0995 6.1080 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3632 -1.0229 0.0988 30 1 1.7611 -1.7368 1.6665 31 1 1.7611 -0.1170 2.4042 32 1 4.1335 0.1817 1.7465 33 1 4.1329 -1.4383 1.0089 34 1 3.5934 -2.4405 3.2124 35 1 3.5943 -0.8202 3.9494 36 1 5.4390 -2.3575 5.1738 37 1 7.9106 -1.1182 4.5973 38 1 7.9098 -2.7381 3.8596 39 1 7.8258 -0.8511 7.0077 40 1 8.3356 -1.8437 9.2013 41 1 8.5790 -4.2826 9.4244 42 1 9.0707 -9.5983 7.9236 43 1 7.8243 -4.7313 5.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649702112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -149.448207 kcal Electronic energy + Delta-G solvation = -25667.282298 eV Core-core repulsion = 21611.207499 eV Total energy + Delta-G solvation = -4056.074799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07424 -40.54142 -38.49379 -37.94957 -37.00050 -35.91948 -35.48072 -34.28818 -32.34621 -30.84816 -30.42462 -29.40034 -27.50458 -26.59653 -23.45788 -23.21977 -22.37804 -21.34114 -19.80603 -19.59010 -18.91513 -18.14693 -17.43100 -17.33100 -16.89408 -16.80441 -16.75751 -16.60656 -16.32013 -16.08438 -15.50995 -15.42854 -14.98669 -14.70309 -14.33295 -14.11234 -13.94568 -13.86256 -13.76594 -13.54296 -13.45109 -13.11991 -13.00596 -12.99963 -12.93945 -12.89983 -12.52542 -12.38821 -12.27752 -12.14583 -11.91957 -11.87476 -11.39552 -11.22489 -10.95126 -10.79208 -10.12122 -9.75689 -9.03907 -8.46965 -6.15682 -0.87309 0.38344 0.69993 1.35952 1.46125 1.51975 1.64968 1.96026 2.17495 2.26451 2.80068 2.88425 3.15403 3.17812 3.40178 3.58808 3.81973 3.88709 3.92144 4.08527 4.15352 4.21492 4.27342 4.30416 4.40047 4.47964 4.52529 4.64040 4.71090 4.73670 4.77305 4.97355 5.01450 5.03235 5.11390 5.15613 5.25143 5.39114 5.61944 5.70156 5.71378 6.01261 6.16110 6.56121 6.97689 7.24722 7.77713 8.75768 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.001638 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.212074 B =17086.379584 C =17768.249265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.407 3.593 3 O -0.994 6.994 4 O -0.997 6.997 5 C -0.593 4.593 6 C -0.110 4.110 7 C -0.125 4.125 8 C 0.502 3.498 9 O -0.591 6.591 10 N -0.714 5.714 11 C 0.171 3.829 12 C -0.058 4.058 13 C -0.169 4.169 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.112 3.888 17 O -0.232 6.232 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.182 4.182 27 H 0.157 0.843 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.415 0.585 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.672 17.708 -5.429 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.597 3.403 3 O -0.991 6.991 4 O -0.994 6.994 5 C -0.724 4.724 6 C -0.150 4.150 7 C -0.166 4.166 8 C 0.291 3.709 9 O -0.472 6.472 10 N -0.366 5.366 11 C 0.048 3.952 12 C -0.058 4.058 13 C -0.188 4.188 14 C -0.087 4.087 15 C -0.254 4.254 16 C 0.062 3.938 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.202 4.202 27 H 0.176 0.824 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.252 0.748 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.139 0.861 42 H 0.081 0.919 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.559 17.908 -6.958 26.712 hybrid contribution 0.020 -1.264 1.222 1.758 sum -18.539 16.644 -5.736 25.566 Atomic orbital electron populations 1.30056 1.21133 1.14051 1.13345 1.07756 0.80256 0.74226 0.78104 1.93543 1.81222 1.36925 1.87435 1.93546 1.81262 1.67705 1.56921 1.30196 1.03442 1.16677 1.22042 1.21085 0.92749 1.02680 0.98436 1.21712 0.89535 1.06060 0.99273 1.21510 0.92697 0.75974 0.80753 1.90710 1.63242 1.50134 1.43114 1.46062 1.07331 1.63227 1.20019 1.20009 0.81812 1.00702 0.92712 1.19438 0.99806 0.91283 0.95316 1.20993 1.06014 1.00202 0.91549 1.21166 0.95909 0.92981 0.98613 1.21376 1.10342 0.95271 0.98406 1.19863 0.94683 0.84274 0.95013 1.83947 1.76868 1.17426 1.35631 1.21785 1.46930 0.93682 0.86545 0.87879 1.26585 0.96603 0.94990 1.03895 1.70176 1.47768 1.04660 1.33247 0.84656 0.79392 0.77378 0.74864 1.17926 1.19888 1.18285 1.20212 1.10023 0.95186 0.94760 0.82428 0.85034 0.82662 0.81346 0.80871 0.91192 0.91794 0.85644 0.84752 0.74822 0.89778 0.92315 0.83420 0.83301 0.86130 0.91881 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.34 10.62 113.37 1.20 0.86 16 2 S 2.41 26.71 5.36 -56.49 -0.30 26.40 16 3 O -0.99 -20.74 18.10 -127.37 -2.31 -23.04 16 4 O -1.00 -21.73 18.10 -127.37 -2.31 -24.03 16 5 C -0.59 -2.72 5.81 71.99 0.42 -2.30 16 6 C -0.11 -1.65 4.51 30.60 0.14 -1.51 16 7 C -0.13 -1.50 5.70 29.85 0.17 -1.33 16 8 C 0.50 11.44 7.83 87.66 0.69 12.13 16 9 O -0.59 -19.26 15.98 -3.01 -0.05 -19.31 16 10 N -0.71 -15.51 5.55 -466.79 -2.59 -18.10 16 11 C 0.17 4.57 5.80 85.63 0.50 5.07 16 12 C -0.06 -1.77 5.25 -19.88 -0.10 -1.88 16 13 C -0.17 -4.60 9.70 22.30 0.22 -4.38 16 14 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 15 C -0.23 -9.41 9.17 22.39 0.21 -9.21 16 16 C 0.11 5.28 6.65 22.58 0.15 5.43 16 17 O -0.23 -13.53 9.76 -22.74 -0.22 -13.75 16 18 C -0.41 -23.31 9.49 67.92 0.64 -22.67 16 19 H 0.10 5.26 5.21 -2.91 -0.02 5.25 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 21 N -0.92 -55.62 13.67 21.61 0.30 -55.32 16 22 Si 1.02 41.64 29.55 68.60 2.03 43.67 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 C -0.18 -7.29 9.65 22.39 0.22 -7.08 16 27 H 0.16 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.16 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.06 1.26 8.10 -2.39 -0.02 1.25 16 34 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.42 7.16 8.46 -92.71 -0.78 6.37 16 37 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 38 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.12 4.93 5.64 -2.91 -0.02 4.92 16 42 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -93.96 384.23 -0.07 -94.03 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.25 Total: 19.01 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 5.13 Total: -29.56 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -2.29 Total: -73.42 kcal Atomic # 8 Polarization: -75.25 SS G_CDS: -4.88 Total: -80.13 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 26.71 SS G_CDS: -0.30 Total: 26.40 kcal Total: -93.96 -0.07 -94.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.419 kcal (2) G-P(sol) polarization free energy of solvation -93.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds