Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 S 1.65600 * 120.00174 * 2 1 4 4 O 1.42101 * 106.40195 * 310.24866 * 3 2 1 5 5 O 1.42098 * 106.40373 * 177.32112 * 3 2 1 6 6 C 1.76206 * 107.21529 * 63.78317 * 3 2 1 7 7 C 1.38305 * 119.96043 * 243.53837 * 6 3 2 8 8 C 1.38265 * 120.13667 * 180.02562 * 7 6 3 9 9 C 1.38139 * 120.07108 * 0.02562 * 8 7 6 10 10 C 1.38850 * 119.92775 * 359.97438 * 9 8 7 11 11 N 1.39938 * 120.06782 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99979 * 337.98123 * 11 10 9 13 13 O 1.21585 * 120.00051 * 354.36850 * 12 11 10 14 14 N 1.34785 * 119.99531 * 174.36360 * 12 11 10 15 15 C 1.46507 * 119.99362 * 179.72830 * 14 12 11 16 16 H 1.08998 * 109.47114 * 325.27332 * 15 14 12 17 17 C 1.52996 * 109.46621 * 85.27907 * 15 14 12 18 18 C 1.50699 * 109.46649 * 205.27474 * 15 14 12 19 19 H 1.07999 * 120.00338 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99880 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99972 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 120.00110 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.46764 * 60.00153 * 22 20 18 24 24 H 1.48500 * 109.46728 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46870 * 300.00307 * 22 20 18 26 26 C 1.38089 * 119.96584 * 63.79744 * 6 3 2 27 27 C 1.50704 * 120.03702 * 0.02562 * 26 6 3 28 28 H 1.09000 * 109.46890 * 304.99578 * 1 2 3 29 29 H 1.09002 * 109.46633 * 64.99992 * 1 2 3 30 30 H 1.08999 * 109.46978 * 184.99853 * 1 2 3 31 31 H 0.97002 * 120.00052 * 179.97438 * 2 1 3 32 32 H 1.07992 * 119.93401 * 359.97438 * 7 6 3 33 33 H 1.08001 * 119.96588 * 180.02562 * 8 7 6 34 34 H 1.07991 * 120.03600 * 180.02562 * 9 8 7 35 35 H 0.97004 * 119.99963 * 157.98900 * 11 10 9 36 36 H 0.96992 * 120.00082 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47846 * 59.99873 * 17 15 14 38 38 H 1.09007 * 109.46512 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47385 * 299.99153 * 17 15 14 40 40 H 0.96994 * 120.00131 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.47232 * 266.97828 * 27 26 6 42 42 H 1.09005 * 109.46595 * 26.97577 * 27 26 6 43 43 H 1.08995 * 109.46751 * 146.97624 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7310 2.2220 -1.0404 5 8 3.6730 1.1008 0.0637 6 6 1.9099 2.2575 1.5100 7 6 1.2418 3.4683 1.4862 8 6 0.9398 4.1178 2.6688 9 6 1.3052 3.5592 3.8782 10 6 1.9761 2.3438 3.9054 11 7 2.3481 1.7755 5.1288 12 6 2.4727 2.5528 6.2228 13 8 2.3626 3.7598 6.1267 14 7 2.7192 1.9920 7.4234 15 6 2.8606 2.8374 8.6115 16 1 3.3398 3.7763 8.3344 17 6 1.4779 3.1246 9.2003 18 6 3.7052 2.1257 9.6367 19 1 4.0978 1.1423 9.4244 20 6 3.9776 2.7305 10.8455 21 7 3.5000 3.9283 11.1039 22 14 5.0252 1.8487 12.1161 23 1 6.3669 1.5699 11.5440 24 1 5.1684 2.7056 13.3204 25 1 4.3726 0.5695 12.4940 26 6 2.2818 1.6959 2.7155 27 6 3.0154 0.3798 2.7401 28 1 -0.3633 0.5894 0.8419 29 1 -0.3633 0.4343 -0.9314 30 1 -0.3633 -1.0238 0.0895 31 1 1.9501 -0.8401 0.0004 32 1 0.9562 3.9077 0.5420 33 1 0.4176 5.0629 2.6471 34 1 1.0687 4.0667 4.8016 35 1 2.5165 0.8221 5.1895 36 1 2.8073 1.0291 7.5000 37 1 0.9987 2.1857 9.4774 38 1 1.5832 3.7533 10.0846 39 1 0.8670 3.6394 8.4588 40 1 3.6913 4.3537 11.9543 41 1 2.2980 -0.4342 2.8443 42 1 3.5722 0.2568 1.8111 43 1 3.7067 0.3649 3.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119152220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -95.395564 kcal Electronic energy + Delta-G solvation = -27698.202408 eV Core-core repulsion = 23676.764258 eV Total energy + Delta-G solvation = -4021.438150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88887 -39.99335 -38.45464 -37.04843 -36.95462 -35.96271 -35.87455 -34.39056 -33.76073 -31.60315 -30.06704 -27.95759 -27.34535 -26.77658 -24.89909 -23.44270 -22.41953 -21.76105 -20.63319 -19.88826 -19.23407 -18.70612 -18.12989 -17.46572 -17.21682 -16.99911 -16.59201 -16.44755 -16.07878 -15.80126 -15.47769 -15.22467 -14.97960 -14.52925 -14.46395 -14.39692 -13.92573 -13.80643 -13.64463 -13.52555 -13.29349 -13.23947 -13.01347 -12.90379 -12.86477 -12.73338 -12.56122 -12.37766 -12.28573 -12.16609 -11.99906 -11.69793 -11.14121 -11.02593 -10.60568 -10.50918 -10.17814 -9.90311 -9.05066 -8.19050 -6.36513 -0.65895 -0.21799 0.19086 1.44726 1.47019 1.54208 1.62699 1.95356 2.08594 2.40823 2.50792 2.73684 3.11813 3.30100 3.42304 3.62843 3.86616 3.98107 4.27531 4.27695 4.37757 4.55952 4.58250 4.64518 4.72553 4.73024 4.91155 4.91385 5.02094 5.06447 5.07062 5.10447 5.17186 5.30547 5.32723 5.41173 5.57040 5.63361 5.80925 5.89616 6.07170 6.15577 6.18162 6.70675 7.13342 7.31818 7.57657 8.87196 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024657 B = 0.002416 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.299072 B =11588.844488 C =12096.644082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.105 6.105 3 S 2.723 3.277 4 O -0.983 6.983 5 O -0.982 6.982 6 C -0.664 4.664 7 C -0.049 4.049 8 C -0.124 4.124 9 C -0.102 4.102 10 C 0.140 3.860 11 N -0.669 5.669 12 C 0.692 3.308 13 O -0.619 6.619 14 N -0.710 5.710 15 C 0.289 3.711 16 H 0.000 1.000 17 C -0.134 4.134 18 C -0.549 4.549 19 H 0.075 0.925 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.973 3.027 23 H -0.272 1.272 24 H -0.287 1.287 25 H -0.263 1.263 26 C -0.018 4.018 27 C -0.172 4.172 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.431 0.569 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.423 0.577 36 H 0.405 0.595 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.013 0.987 40 H 0.266 0.734 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 -12.683 -21.418 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.869 5.869 3 S 2.811 3.189 4 O -0.972 6.972 5 O -0.972 6.972 6 C -0.750 4.750 7 C -0.069 4.069 8 C -0.144 4.144 9 C -0.123 4.123 10 C 0.043 3.957 11 N -0.318 5.318 12 C 0.392 3.608 13 O -0.500 6.500 14 N -0.363 5.363 15 C 0.185 3.815 16 H 0.018 0.982 17 C -0.193 4.193 18 C -0.587 4.587 19 H 0.093 0.907 20 C -0.185 4.185 21 N -0.555 5.555 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.213 1.213 25 H -0.187 1.187 26 C -0.023 4.023 27 C -0.228 4.228 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.269 0.731 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.152 0.848 35 H 0.262 0.738 36 H 0.240 0.760 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.429 -11.036 -21.862 25.591 hybrid contribution 0.503 -0.672 1.922 2.097 sum -6.925 -11.708 -19.941 24.138 Atomic orbital electron populations 1.21747 0.76924 1.06126 1.02348 1.54938 1.17015 1.23325 1.91640 1.00962 0.72300 0.72868 0.72741 1.93532 1.79584 1.70408 1.53713 1.93528 1.32858 1.83682 1.87114 1.30596 1.16062 1.10183 1.18207 1.21124 0.93666 0.92269 0.99867 1.21409 1.00720 1.01156 0.91079 1.21969 0.94880 0.95007 1.00473 1.17654 0.98127 0.95353 0.84576 1.42482 1.71435 1.11945 1.05904 1.16260 0.78203 0.85118 0.81214 1.90801 1.59333 1.14483 1.85426 1.45484 1.73781 1.11168 1.05825 1.18273 0.93313 0.89446 0.80430 0.98200 1.21920 0.96918 1.00012 1.00453 1.21506 1.32650 1.04154 1.00388 0.90672 1.25783 0.96945 0.95524 1.00223 1.70039 1.45369 1.15384 1.24693 0.85388 0.78894 0.78452 0.77540 1.19685 1.21293 1.18731 1.19295 0.95745 0.97764 0.89496 1.21626 1.01421 0.92878 1.06835 0.91718 0.91601 0.86981 0.73111 0.82345 0.82949 0.84774 0.73826 0.75983 0.93997 0.91392 0.96817 0.92490 0.86282 0.88060 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.13 127.77 1.42 1.92 16 2 N -1.10 -10.75 5.95 -206.53 -1.23 -11.98 16 3 S 2.72 51.30 4.99 -56.49 -0.28 51.01 16 4 O -0.98 -23.30 16.75 -128.00 -2.14 -25.45 16 5 O -0.98 -23.52 15.48 -128.00 -1.98 -25.50 16 6 C -0.66 -14.46 5.84 22.25 0.13 -14.33 16 7 C -0.05 -1.09 9.55 22.29 0.21 -0.88 16 8 C -0.12 -3.10 10.04 22.25 0.22 -2.87 16 9 C -0.10 -3.20 8.75 22.39 0.20 -3.01 16 10 C 0.14 4.02 6.45 38.15 0.25 4.26 16 11 N -0.67 -19.15 5.04 -317.17 -1.60 -20.75 16 12 C 0.69 27.10 8.36 179.05 1.50 28.60 16 13 O -0.62 -29.65 13.02 -3.98 -0.05 -29.70 16 14 N -0.71 -28.14 5.07 -461.40 -2.34 -30.48 16 15 C 0.29 14.55 2.56 44.24 0.11 14.66 16 16 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 17 C -0.13 -6.60 9.26 71.98 0.67 -5.93 16 18 C -0.55 -28.17 8.73 25.60 0.22 -27.94 16 19 H 0.08 3.56 7.74 -2.91 -0.02 3.53 16 20 C 0.02 0.82 5.30 84.65 0.45 1.27 16 21 N -0.92 -51.67 11.32 21.45 0.24 -51.43 16 22 Si 0.97 41.01 29.54 68.60 2.03 43.03 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 26 C -0.02 -0.42 5.89 -19.74 -0.12 -0.54 16 27 C -0.17 -2.77 8.75 71.24 0.62 -2.15 16 28 H 0.06 0.45 8.13 -2.39 -0.02 0.43 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.43 2.08 8.96 -96.74 -0.87 1.21 16 32 H 0.16 2.89 7.33 -2.91 -0.02 2.86 16 33 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.13 5.03 5.59 -2.92 -0.02 5.01 16 35 H 0.42 8.57 7.39 -92.71 -0.69 7.88 16 36 H 0.40 12.98 8.56 -92.71 -0.79 12.19 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 3.68 6.07 -2.38 -0.01 3.67 16 39 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.69 4.80 -2.38 -0.01 1.68 16 43 H 0.08 1.37 7.11 -2.39 -0.02 1.35 16 Total: -1.00 -76.74 365.42 -2.73 -79.47 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -1.26 Total: 28.72 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.89 Total: -6.94 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -4.93 Total: -114.64 kcal Atomic # 8 Polarization: -76.48 SS G_CDS: -4.18 Total: -80.65 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.28 Total: 51.01 kcal Total: -76.74 -2.73 -79.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119152220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.928 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds