Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38134 * 120.03506 * 2 1 4 4 C 1.38265 * 120.06948 * 180.25153 * 3 2 1 5 5 C 1.38305 * 120.13982 * 359.49425 * 4 3 2 6 6 S 1.76201 * 119.96543 * 180.25447 * 5 4 3 7 7 N 1.65602 * 107.22046 * 89.99635 * 6 5 4 8 8 O 1.42099 * 106.40435 * 203.53725 * 6 5 4 9 9 O 1.42106 * 106.39937 * 336.45811 * 6 5 4 10 10 C 1.38088 * 120.07135 * 0.22461 * 5 4 3 11 11 C 1.38851 * 120.03666 * 179.72312 * 2 1 3 12 12 N 1.39924 * 120.06907 * 359.97438 * 11 2 1 13 13 C 1.34782 * 119.99828 * 145.31339 * 12 11 2 14 14 O 1.21287 * 120.00067 * 4.49555 * 13 12 11 15 15 C 1.50706 * 119.99601 * 184.49885 * 13 12 11 16 16 N 1.46903 * 109.46485 * 179.97438 * 15 13 12 17 17 C 1.46903 * 111.00172 * 293.94957 * 16 15 13 18 18 C 1.46908 * 110.99645 * 169.99747 * 16 15 13 19 19 C 1.50700 * 109.47008 * 189.99924 * 18 16 15 20 20 H 1.08000 * 119.99740 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99537 * 180.02562 * 19 18 16 22 22 N 1.31522 * 119.99312 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00426 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47289 * 89.99946 * 23 21 19 25 25 H 1.48505 * 109.46987 * 210.00249 * 23 21 19 26 26 H 1.48506 * 109.47051 * 330.00184 * 23 21 19 27 27 H 1.08997 * 109.47351 * 270.27458 * 1 2 3 28 28 H 1.09000 * 109.47125 * 30.27807 * 1 2 3 29 29 H 1.09005 * 109.46884 * 150.27115 * 1 2 3 30 30 H 1.07999 * 119.96988 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.93327 * 179.76489 * 4 3 2 32 32 H 0.96996 * 119.99983 * 359.97438 * 7 6 5 33 33 H 0.96995 * 119.99992 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.03966 * 179.97438 * 10 5 4 35 35 H 0.97001 * 119.99939 * 325.31170 * 12 11 2 36 36 H 1.08999 * 109.46882 * 299.99559 * 15 13 12 37 37 H 1.08994 * 109.47412 * 59.99762 * 15 13 12 38 38 H 1.08998 * 109.46640 * 60.00528 * 17 16 15 39 39 H 1.08991 * 109.47049 * 180.02562 * 17 16 15 40 40 H 1.08999 * 109.46854 * 300.00543 * 17 16 15 41 41 H 1.09003 * 109.47162 * 310.00212 * 18 16 15 42 42 H 1.09003 * 109.46781 * 69.99909 * 18 16 15 43 43 H 0.97005 * 119.99404 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.2762 0.0011 0.0000 6 16 6.0382 0.0075 0.0001 7 7 6.5284 0.0164 1.5819 8 8 6.4441 -1.2431 -0.5388 9 8 6.4348 1.2564 -0.5499 10 6 3.5909 -1.1978 0.0059 11 6 2.2020 -1.2020 0.0058 12 7 1.5046 -2.4151 0.0122 13 6 2.0006 -3.4810 -0.6469 14 8 3.0895 -3.4135 -1.1768 15 6 1.2021 -4.7567 -0.7254 16 7 1.9546 -5.7589 -1.4918 17 6 2.0981 -5.3495 -2.8953 18 6 1.3232 -7.0815 -1.3912 19 6 2.2424 -8.1227 -1.9761 20 1 3.1996 -7.8310 -2.3824 21 6 1.8608 -9.4475 -1.9935 22 7 2.6632 -10.3562 -2.5036 23 14 0.2049 -9.9519 -1.2914 24 1 -0.8233 -9.8993 -2.3616 25 1 0.2940 -11.3350 -0.7580 26 1 -0.1724 -9.0224 -0.1964 27 1 -0.3634 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8925 -0.5096 30 1 1.6584 2.1312 -0.0004 31 1 4.1193 2.1329 -0.0091 32 1 5.8696 0.0175 2.2938 33 1 7.4743 0.0212 1.7964 34 1 4.1343 -2.1311 0.0096 35 1 0.6642 -2.4889 0.4910 36 1 1.0171 -5.1321 0.2811 37 1 0.2511 -4.5602 -1.2203 38 1 2.6310 -4.3999 -2.9441 39 1 2.6585 -6.1093 -3.4399 40 1 1.1110 -5.2357 -3.3433 41 1 1.1311 -7.3137 -0.3436 42 1 0.3820 -7.0776 -1.9409 43 1 2.3949 -11.2883 -2.5155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164097392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -63.317216 kcal Electronic energy + Delta-G solvation = -27407.433964 eV Core-core repulsion = 23387.386836 eV Total energy + Delta-G solvation = -4020.047128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89136 -38.97241 -37.25211 -36.30327 -35.93629 -35.01942 -33.44248 -33.14589 -32.48495 -30.58969 -28.64635 -27.72041 -27.13389 -24.37639 -23.22182 -22.24416 -20.80340 -20.14268 -19.76963 -18.86024 -17.60022 -17.29574 -16.86952 -16.71210 -16.26607 -16.17321 -15.56184 -15.16794 -15.01528 -14.56535 -14.34569 -14.29722 -14.09051 -13.74390 -13.68211 -12.96514 -12.73918 -12.58575 -12.51666 -12.29389 -12.20224 -12.18843 -12.10952 -11.87897 -11.83568 -11.29933 -11.12974 -10.99835 -10.75193 -10.73045 -10.63152 -10.52493 -9.90654 -9.60788 -9.43061 -9.24632 -8.59705 -8.46565 -7.47336 -6.05535 -4.03472 0.16798 0.46173 0.94968 2.53417 2.77371 2.93762 3.16861 3.25045 3.31895 3.33341 3.54560 4.22739 4.37948 4.39145 4.46956 4.68198 4.74653 4.81187 4.93815 5.05059 5.10037 5.25407 5.29509 5.43787 5.44648 5.51142 5.52443 5.71255 5.72472 5.83665 5.95929 6.04979 6.18049 6.25944 6.61974 6.71708 6.74562 6.79541 6.98335 7.15575 7.52479 7.81178 7.91485 8.16711 8.62936 9.05575 9.54536 11.07654 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002697 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.598433 B =10378.921966 C =11702.235144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.058 4.058 3 C -0.125 4.125 4 C -0.037 4.037 5 C -0.663 4.663 6 S 2.700 3.300 7 N -1.251 6.251 8 O -0.950 6.950 9 O -0.967 6.967 10 C -0.018 4.018 11 C 0.134 3.866 12 N -0.682 5.682 13 C 0.510 3.490 14 O -0.484 6.484 15 C 0.037 3.963 16 N -0.513 5.513 17 C 0.030 3.970 18 C 0.163 3.837 19 C -0.510 4.510 20 H 0.083 0.917 21 C 0.068 3.932 22 N -0.898 5.898 23 Si 0.877 3.123 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.268 1.268 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.415 0.585 33 H 0.420 0.580 34 H 0.164 0.836 35 H 0.411 0.589 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.029 0.971 42 H -0.014 1.014 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 27.014 11.820 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.057 4.057 5 C -0.751 4.751 6 S 2.788 3.212 7 N -0.925 5.925 8 O -0.939 6.939 9 O -0.956 6.956 10 C -0.039 4.039 11 C 0.038 3.962 12 N -0.330 5.330 13 C 0.297 3.703 14 O -0.355 6.355 15 C -0.095 4.095 16 N -0.237 5.237 17 C -0.118 4.118 18 C 0.038 3.962 19 C -0.548 4.548 20 H 0.101 0.899 21 C -0.134 4.134 22 N -0.537 5.537 23 Si 0.704 3.296 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.193 1.193 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.242 0.758 33 H 0.250 0.750 34 H 0.181 0.819 35 H 0.247 0.753 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.025 0.975 41 H 0.047 0.953 42 H 0.003 0.997 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.450 26.692 10.593 28.822 hybrid contribution -2.813 -0.392 0.931 2.989 sum -5.263 26.299 11.524 29.192 Atomic orbital electron populations 1.20887 0.90279 1.03912 1.02981 1.20075 0.96572 0.91972 0.97502 1.20958 0.93970 0.97299 1.02191 1.20883 0.94694 0.96473 0.93680 1.30464 1.25803 0.99105 1.19738 1.01651 0.73024 0.74141 0.72343 1.53075 1.17350 1.95422 1.26669 1.93678 1.80243 1.43747 1.76210 1.93591 1.80902 1.44821 1.76310 1.21228 0.93369 0.98022 0.91317 1.17628 0.91277 0.85374 1.01902 1.43719 1.26234 1.09286 1.53717 1.21321 0.87312 0.84532 0.77101 1.90733 1.19898 1.81816 1.43065 1.21977 0.94731 0.90806 1.01975 1.61716 1.49049 1.01432 1.11543 1.22435 0.98939 1.02091 0.88359 1.20253 0.93486 0.85738 0.96767 1.21015 1.04649 0.90124 1.39001 0.89851 1.24904 0.96904 0.96445 0.95102 1.69901 1.36524 1.01570 1.45691 0.86854 0.84829 0.78139 0.79791 1.20372 1.21105 1.19282 0.90240 0.90463 0.90934 0.84665 0.84018 0.75792 0.75030 0.81902 0.75296 0.87980 0.92523 0.91436 0.89856 0.97504 0.95280 0.99660 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.47 36.00 0.34 -0.33 16 2 C -0.06 -0.50 5.90 -104.44 -0.62 -1.11 16 3 C -0.12 -0.97 9.70 -39.61 -0.38 -1.35 16 4 C -0.04 -0.33 9.52 -39.55 -0.38 -0.71 16 5 C -0.66 -7.18 5.94 -39.61 -0.24 -7.41 16 6 S 2.70 29.34 6.28 -107.50 -0.68 28.67 16 7 N -1.25 -7.92 9.55 60.35 0.58 -7.35 16 8 O -0.95 -14.93 17.28 -57.17 -0.99 -15.92 16 9 O -0.97 -12.54 17.28 -57.17 -0.99 -13.53 16 10 C -0.02 -0.23 8.17 -39.39 -0.32 -0.55 16 11 C 0.13 1.50 6.29 -83.69 -0.53 0.98 16 12 N -0.68 -7.24 4.75 -9.86 -0.05 -7.29 16 13 C 0.51 7.65 7.40 -10.98 -0.08 7.56 16 14 O -0.48 -9.33 11.73 5.55 0.07 -9.26 16 15 C 0.04 0.57 5.45 -4.97 -0.03 0.54 16 16 N -0.51 -10.91 4.49 -245.82 -1.10 -12.02 16 17 C 0.03 0.62 9.03 60.07 0.54 1.16 16 18 C 0.16 3.88 3.79 -4.97 -0.02 3.86 16 19 C -0.51 -14.58 9.01 -34.44 -0.31 -14.89 16 20 H 0.08 2.65 7.37 -52.49 -0.39 2.26 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 23 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.07 0.40 7.17 -51.93 -0.37 0.03 16 30 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 31 H 0.14 0.99 7.61 -52.49 -0.40 0.59 16 32 H 0.42 1.60 8.92 -34.47 -0.31 1.30 16 33 H 0.42 1.98 8.96 -34.47 -0.31 1.68 16 34 H 0.16 2.52 5.75 -52.49 -0.30 2.21 16 35 H 0.41 2.82 7.85 -40.82 -0.32 2.50 16 36 H 0.10 1.37 7.93 -51.93 -0.41 0.96 16 37 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.07 1.37 5.88 -51.93 -0.31 1.06 16 39 H 0.08 1.92 6.76 -51.93 -0.35 1.57 16 40 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 42 H -0.01 -0.33 7.55 -51.93 -0.39 -0.72 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -40.10 366.27 -9.14 -49.25 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.50 Total: 2.78 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.11 Total: -10.38 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.20 Total: -53.52 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.91 Total: -38.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 29.34 SS G_CDS: -0.68 Total: 28.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -40.10 -9.14 -49.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164097392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.070 kcal (2) G-P(sol) polarization free energy of solvation -40.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds