Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38134 * 120.03506 * 2 1 4 4 C 1.38265 * 120.06948 * 180.25153 * 3 2 1 5 5 C 1.38305 * 120.13982 * 359.49425 * 4 3 2 6 6 S 1.76201 * 119.96543 * 180.25447 * 5 4 3 7 7 N 1.65602 * 107.22046 * 89.99635 * 6 5 4 8 8 O 1.42099 * 106.40435 * 203.53725 * 6 5 4 9 9 O 1.42106 * 106.39937 * 336.45811 * 6 5 4 10 10 C 1.38088 * 120.07135 * 0.22461 * 5 4 3 11 11 C 1.38851 * 120.03666 * 179.72312 * 2 1 3 12 12 N 1.39924 * 120.06907 * 359.97438 * 11 2 1 13 13 C 1.34782 * 119.99828 * 145.31339 * 12 11 2 14 14 O 1.21287 * 120.00067 * 4.49555 * 13 12 11 15 15 C 1.50706 * 119.99601 * 184.49885 * 13 12 11 16 16 N 1.46903 * 109.46485 * 179.97438 * 15 13 12 17 17 C 1.46903 * 111.00172 * 293.94957 * 16 15 13 18 18 C 1.46908 * 110.99645 * 169.99747 * 16 15 13 19 19 C 1.50700 * 109.47008 * 189.99924 * 18 16 15 20 20 H 1.08000 * 119.99740 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99537 * 180.02562 * 19 18 16 22 22 N 1.31522 * 119.99312 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00426 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47289 * 89.99946 * 23 21 19 25 25 H 1.48505 * 109.46987 * 210.00249 * 23 21 19 26 26 H 1.48506 * 109.47051 * 330.00184 * 23 21 19 27 27 H 1.08997 * 109.47351 * 270.27458 * 1 2 3 28 28 H 1.09000 * 109.47125 * 30.27807 * 1 2 3 29 29 H 1.09005 * 109.46884 * 150.27115 * 1 2 3 30 30 H 1.07999 * 119.96988 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.93327 * 179.76489 * 4 3 2 32 32 H 0.96996 * 119.99983 * 359.97438 * 7 6 5 33 33 H 0.96995 * 119.99992 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.03966 * 179.97438 * 10 5 4 35 35 H 0.97001 * 119.99939 * 325.31170 * 12 11 2 36 36 H 1.08999 * 109.46882 * 299.99559 * 15 13 12 37 37 H 1.08994 * 109.47412 * 59.99762 * 15 13 12 38 38 H 1.08998 * 109.46640 * 60.00528 * 17 16 15 39 39 H 1.08991 * 109.47049 * 180.02562 * 17 16 15 40 40 H 1.08999 * 109.46854 * 300.00543 * 17 16 15 41 41 H 1.09003 * 109.47162 * 310.00212 * 18 16 15 42 42 H 1.09003 * 109.46781 * 69.99909 * 18 16 15 43 43 H 0.97005 * 119.99404 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0053 5 6 4.2762 0.0011 0.0000 6 16 6.0382 0.0075 0.0001 7 7 6.5284 0.0164 1.5819 8 8 6.4441 -1.2431 -0.5388 9 8 6.4348 1.2564 -0.5499 10 6 3.5909 -1.1978 0.0059 11 6 2.2020 -1.2020 0.0058 12 7 1.5046 -2.4151 0.0122 13 6 2.0006 -3.4810 -0.6469 14 8 3.0895 -3.4135 -1.1768 15 6 1.2021 -4.7567 -0.7254 16 7 1.9546 -5.7589 -1.4918 17 6 2.0981 -5.3495 -2.8953 18 6 1.3232 -7.0815 -1.3912 19 6 2.2424 -8.1227 -1.9761 20 1 3.1996 -7.8310 -2.3824 21 6 1.8608 -9.4475 -1.9935 22 7 2.6632 -10.3562 -2.5036 23 14 0.2049 -9.9519 -1.2914 24 1 -0.8233 -9.8993 -2.3616 25 1 0.2940 -11.3350 -0.7580 26 1 -0.1724 -9.0224 -0.1964 27 1 -0.3634 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8925 -0.5096 30 1 1.6584 2.1312 -0.0004 31 1 4.1193 2.1329 -0.0091 32 1 5.8696 0.0175 2.2938 33 1 7.4743 0.0212 1.7964 34 1 4.1343 -2.1311 0.0096 35 1 0.6642 -2.4889 0.4910 36 1 1.0171 -5.1321 0.2811 37 1 0.2511 -4.5602 -1.2203 38 1 2.6310 -4.3999 -2.9441 39 1 2.6585 -6.1093 -3.4399 40 1 1.1110 -5.2357 -3.3433 41 1 1.1311 -7.3137 -0.3436 42 1 0.3820 -7.0776 -1.9409 43 1 2.3949 -11.2883 -2.5155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164097392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -99.186828 kcal Electronic energy + Delta-G solvation = -27408.989387 eV Core-core repulsion = 23387.386836 eV Total energy + Delta-G solvation = -4021.602551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84131 -39.97454 -38.27049 -37.83844 -36.96417 -36.02412 -34.61623 -34.11323 -33.83018 -31.59501 -30.22167 -28.91616 -28.13075 -26.02033 -24.25540 -23.01551 -22.31479 -21.40063 -20.65407 -19.70871 -19.02533 -18.39491 -18.23250 -17.64499 -17.14017 -17.05139 -16.73892 -16.38080 -16.05286 -15.94535 -15.85270 -15.51494 -15.15449 -14.79766 -14.67762 -14.44737 -13.83910 -13.54813 -13.47786 -13.32614 -13.26008 -13.24886 -13.19490 -13.11724 -12.90026 -12.67372 -12.57005 -12.55464 -12.29648 -11.98437 -11.75752 -11.57414 -11.51140 -11.38625 -10.78577 -10.76508 -10.13907 -9.31885 -9.05798 -8.26233 -6.31679 -0.65740 -0.32490 0.15484 1.37039 1.40864 1.48270 1.51412 1.83466 2.13854 2.36696 2.37154 2.73048 3.06199 3.24082 3.43713 3.73629 3.75824 3.80748 4.03506 4.24782 4.29931 4.34040 4.38347 4.49188 4.57521 4.64204 4.70387 4.80150 4.88510 4.93223 4.99950 5.05788 5.18491 5.21399 5.23565 5.26819 5.36388 5.51984 5.83495 5.92180 6.19536 6.31128 6.36793 6.64090 6.75567 7.12012 7.31612 8.91352 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002697 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.598433 B =10378.921966 C =11702.235144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.045 4.045 3 C -0.119 4.119 4 C -0.035 4.035 5 C -0.667 4.667 6 S 2.718 3.282 7 N -1.232 6.232 8 O -1.008 7.008 9 O -0.990 6.990 10 C -0.046 4.046 11 C 0.111 3.889 12 N -0.658 5.658 13 C 0.511 3.489 14 O -0.539 6.539 15 C 0.037 3.963 16 N -0.544 5.544 17 C 0.042 3.958 18 C 0.175 3.825 19 C -0.524 4.524 20 H 0.026 0.974 21 C 0.001 3.999 22 N -0.954 5.954 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.235 1.235 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.163 0.837 32 H 0.429 0.571 33 H 0.429 0.571 34 H 0.127 0.873 35 H 0.431 0.569 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.028 0.972 41 H 0.044 0.956 42 H 0.000 1.000 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 29.866 14.225 34.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.048 4.048 3 C -0.138 4.138 4 C -0.055 4.055 5 C -0.757 4.757 6 S 2.808 3.192 7 N -0.912 5.912 8 O -0.997 6.997 9 O -0.979 6.979 10 C -0.068 4.068 11 C 0.016 3.984 12 N -0.306 5.306 13 C 0.299 3.701 14 O -0.414 6.414 15 C -0.094 4.094 16 N -0.269 5.269 17 C -0.106 4.106 18 C 0.048 3.952 19 C -0.562 4.562 20 H 0.044 0.956 21 C -0.196 4.196 22 N -0.594 5.594 23 Si 0.781 3.219 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.158 1.158 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.193 0.807 31 H 0.180 0.820 32 H 0.259 0.741 33 H 0.262 0.738 34 H 0.145 0.855 35 H 0.271 0.729 36 H 0.146 0.854 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.018 0.982 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.928 29.608 13.050 33.090 hybrid contribution -1.356 -1.119 0.206 1.770 sum -8.284 28.489 13.256 32.496 Atomic orbital electron populations 1.21027 0.87466 1.04827 1.04780 1.20473 0.98469 0.90832 0.94982 1.21455 0.93476 0.98639 1.00256 1.21268 0.95715 0.96241 0.92287 1.30176 1.24907 0.99470 1.21178 1.00692 0.72983 0.72592 0.72888 1.52613 1.18350 1.94922 1.25304 1.93617 1.81670 1.46232 1.78221 1.93555 1.81624 1.45163 1.77580 1.21017 0.94568 0.97345 0.93891 1.17790 0.90790 0.86362 1.03471 1.43328 1.26532 1.08204 1.52582 1.21274 0.86510 0.85360 0.76925 1.90744 1.22119 1.82766 1.45725 1.22095 0.95195 0.89500 1.02630 1.61455 1.51206 1.02173 1.12032 1.22216 0.99402 1.00497 0.88495 1.20007 0.92514 0.85690 0.96972 1.21294 1.03583 0.92204 1.39122 0.95613 1.26016 1.02069 0.96130 0.95353 1.70097 1.39516 1.02172 1.47662 0.85559 0.78369 0.78058 0.79933 1.19136 1.21070 1.15829 0.87784 0.88705 0.90918 0.80718 0.81983 0.74056 0.73818 0.85497 0.72857 0.85380 0.89029 0.91422 0.93928 0.95375 0.93766 0.98226 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.47 71.23 0.67 -0.04 16 2 C -0.04 -0.60 5.90 -19.74 -0.12 -0.72 16 3 C -0.12 -1.36 9.70 22.25 0.22 -1.15 16 4 C -0.04 -0.54 9.52 22.29 0.21 -0.33 16 5 C -0.67 -14.42 5.94 22.25 0.13 -14.29 16 6 S 2.72 62.01 6.28 -56.49 -0.35 61.65 16 7 N -1.23 -15.55 9.55 37.02 0.35 -15.20 16 8 O -1.01 -34.71 17.28 -128.00 -2.21 -36.92 16 9 O -0.99 -26.01 17.28 -128.00 -2.21 -28.22 16 10 C -0.05 -1.23 8.17 22.39 0.18 -1.05 16 11 C 0.11 2.33 6.29 38.15 0.24 2.57 16 12 N -0.66 -12.65 4.75 -303.49 -1.44 -14.09 16 13 C 0.51 14.99 7.40 87.66 0.65 15.64 16 14 O -0.54 -21.73 11.73 -3.05 -0.04 -21.76 16 15 C 0.04 1.04 5.45 85.56 0.47 1.51 16 16 N -0.54 -23.14 4.49 -931.62 -4.18 -27.33 16 17 C 0.04 1.80 9.03 127.69 1.15 2.95 16 18 C 0.17 8.12 3.79 85.56 0.32 8.44 16 19 C -0.52 -31.10 9.01 25.60 0.23 -30.87 16 20 H 0.03 1.76 7.37 -2.91 -0.02 1.74 16 21 C 0.00 0.05 5.47 84.65 0.46 0.51 16 22 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 23 Si 0.96 42.80 27.47 68.60 1.88 44.69 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 27 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.09 0.29 8.09 -2.39 -0.02 0.27 16 29 H 0.07 0.47 7.17 -2.38 -0.02 0.45 16 30 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 31 H 0.16 1.80 7.61 -2.91 -0.02 1.78 16 32 H 0.43 3.01 8.92 -96.75 -0.86 2.15 16 33 H 0.43 3.99 8.96 -96.75 -0.87 3.12 16 34 H 0.13 4.32 5.75 -2.91 -0.02 4.31 16 35 H 0.43 4.36 7.85 -92.71 -0.73 3.64 16 36 H 0.13 2.97 7.93 -2.39 -0.02 2.95 16 37 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 38 H 0.07 2.88 5.88 -2.39 -0.01 2.86 16 39 H 0.04 2.11 6.76 -2.39 -0.02 2.10 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.04 1.93 6.99 -2.39 -0.02 1.91 16 42 H 0.00 0.00 7.55 -2.39 -0.02 -0.01 16 43 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -95.31 366.27 -4.50 -99.81 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -1.43 Total: 15.03 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.83 Total: -16.82 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.97 Total: -117.45 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -4.46 Total: -86.91 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.69 kcal Atomic # 16 Polarization: 62.01 SS G_CDS: -0.35 Total: 61.65 kcal Total: -95.31 -4.50 -99.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164097392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.623 kcal (2) G-P(sol) polarization free energy of solvation -95.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds