Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37704 * 119.95395 * 2 1 4 4 C 1.39731 * 119.91460 * 180.02562 * 3 2 1 5 5 C 1.47608 * 120.09208 * 180.02562 * 4 3 2 6 6 O 1.21579 * 120.00085 * 173.08503 * 5 4 3 7 7 N 1.34775 * 119.99580 * 353.09113 * 5 4 3 8 8 C 1.47583 * 134.48911 * 174.43455 * 7 5 4 9 9 C 1.53943 * 86.11631 * 155.35580 * 8 7 5 10 10 O 1.42908 * 113.74268 * 269.15611 * 9 8 7 11 11 C 1.50704 * 113.74364 * 137.95078 * 9 8 7 12 12 H 1.08000 * 119.99718 * 1.92775 * 11 9 8 13 13 C 1.37877 * 120.00152 * 181.92709 * 11 9 8 14 14 N 1.31521 * 119.99938 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00004 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47242 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.46965 * 299.99698 * 15 13 11 18 18 H 1.48496 * 109.47295 * 59.99740 * 15 13 11 19 19 C 1.47816 * 134.45876 * 354.29971 * 7 5 4 20 20 C 1.39734 * 119.82308 * 0.27871 * 4 3 2 21 21 C 1.37709 * 119.90670 * 359.46548 * 20 4 3 22 22 C 1.50704 * 119.95249 * 180.25301 * 21 20 4 23 23 C 1.38988 * 120.08957 * 0.51414 * 21 20 4 24 24 O 1.35712 * 119.91099 * 179.74655 * 23 21 20 25 25 C 1.42905 * 116.99472 * 270.01511 * 24 23 21 26 26 F 1.39896 * 109.47256 * 300.00098 * 25 24 23 27 27 F 1.39903 * 109.46854 * 60.00395 * 25 24 23 28 28 H 1.09000 * 109.47214 * 89.99836 * 1 2 3 29 29 H 1.09000 * 109.47027 * 209.99713 * 1 2 3 30 30 H 1.09002 * 109.47566 * 329.99789 * 1 2 3 31 31 H 1.08004 * 120.04329 * 0.02562 * 3 2 1 32 32 H 1.08993 * 113.77071 * 41.05802 * 8 7 5 33 33 H 1.08998 * 113.77033 * 269.65730 * 8 7 5 34 34 H 0.96705 * 113.99730 * 178.07468 * 10 9 8 35 35 H 0.96996 * 119.99901 * 179.97438 * 14 13 11 36 36 H 1.08993 * 113.77022 * 90.38219 * 19 7 5 37 37 H 1.09003 * 113.83242 * 318.91450 * 19 7 5 38 38 H 1.07998 * 120.04482 * 179.69951 * 20 4 3 39 39 H 1.08997 * 109.46999 * 270.25705 * 22 21 20 40 40 H 1.09001 * 109.46908 * 30.26181 * 22 21 20 41 41 H 1.08996 * 109.46825 * 150.25760 * 22 21 20 42 42 H 1.09007 * 109.46903 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1931 0.0000 4 6 3.5918 1.1921 -0.0005 5 6 4.3328 2.4688 0.0000 6 8 5.5420 2.4698 0.1263 7 7 3.6688 3.6333 -0.1393 8 6 4.0540 5.0568 -0.0819 9 6 2.8245 5.3173 -0.9708 10 8 3.1077 5.2767 -2.3709 11 6 2.0304 6.5329 -0.5670 12 1 2.3625 7.1451 0.2584 13 6 0.8801 6.8635 -1.2514 14 7 0.4760 6.1183 -2.2569 15 14 -0.1038 8.3706 -0.7513 16 1 -1.2873 8.5058 -1.6381 17 1 -0.5535 8.2235 0.6562 18 1 0.7476 9.5810 -0.8750 19 6 2.2625 3.9968 -0.4136 20 6 4.2859 -0.0206 -0.0070 21 6 3.5910 -1.2095 -0.0016 22 6 4.3386 -2.5180 -0.0028 23 6 2.2011 -1.2042 -0.0006 24 8 1.5199 -2.3780 -0.0005 25 6 1.1937 -2.9387 -1.2739 26 9 0.3942 -2.0400 -1.9882 27 9 2.3701 -3.1868 -1.9893 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6545 2.1284 0.0004 32 1 5.0035 5.2750 -0.5706 33 1 3.9766 5.4931 0.9140 34 1 2.3323 5.4107 -2.9331 35 1 -0.3335 6.3506 -2.7382 36 1 1.6577 4.1210 0.4846 37 1 1.7845 3.3703 -1.1667 38 1 5.3659 -0.0255 -0.0123 39 1 4.5180 -2.8330 -1.0307 40 1 5.2919 -2.3922 0.5104 41 1 3.7464 -3.2752 0.5111 42 1 0.6517 -3.8737 -1.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186803137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -169.055585 kcal Electronic energy + Delta-G solvation = -30508.168232 eV Core-core repulsion = 25897.402806 eV Total energy + Delta-G solvation = -4610.765426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.29867 -47.42553 -40.52587 -39.44735 -37.71564 -36.80356 -34.13005 -33.63592 -32.26022 -31.59362 -28.69444 -27.68981 -26.81667 -26.09769 -25.43135 -25.10996 -22.73488 -21.04622 -20.06953 -18.98811 -18.55859 -18.40982 -17.97412 -17.45239 -16.56252 -16.17812 -15.94366 -15.33723 -15.01753 -14.75899 -14.33006 -14.25699 -14.02997 -13.88269 -13.85566 -13.52083 -13.27485 -13.06775 -13.05901 -13.04147 -12.68781 -12.48221 -12.44565 -12.34222 -12.09741 -11.94686 -11.75537 -11.60601 -11.35085 -11.11104 -11.06867 -10.68468 -10.52582 -10.33412 -9.71711 -9.29654 -8.80638 -8.69054 -8.67035 -8.43145 -7.89438 -6.42762 -4.53516 0.63824 1.29606 2.56843 3.14121 3.19839 3.20467 3.22623 3.41969 3.43844 3.95778 4.15933 4.26991 4.44405 4.60025 4.71953 4.73289 4.83511 5.18826 5.25837 5.28257 5.43469 5.46075 5.54322 5.56852 5.66427 5.75638 5.87054 5.93348 6.06745 6.14040 6.19994 6.28630 6.36025 6.38775 6.41679 6.44115 6.57371 6.65241 7.02325 7.04657 7.59176 7.77415 8.36835 8.49725 8.66328 9.17809 9.38799 10.63931 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.003320 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.872253 B = 8432.131265 C = 9640.465545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.095 4.095 4 C -0.101 4.101 5 C 0.569 3.431 6 O -0.559 6.559 7 N -0.625 5.625 8 C 0.113 3.887 9 C 0.241 3.759 10 O -0.571 6.571 11 C -0.539 4.539 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.897 5.897 15 Si 0.907 3.093 16 H -0.285 1.285 17 H -0.273 1.273 18 H -0.273 1.273 19 C 0.070 3.930 20 C -0.065 4.065 21 C -0.090 4.090 22 C -0.112 4.112 23 C 0.073 3.927 24 O -0.328 6.328 25 C 0.406 3.594 26 F -0.201 7.201 27 F -0.203 7.203 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.392 0.608 35 H 0.274 0.726 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 -17.487 3.345 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.113 4.113 4 C -0.104 4.104 5 C 0.359 3.641 6 O -0.440 6.440 7 N -0.357 5.357 8 C -0.009 4.009 9 C 0.199 3.801 10 O -0.383 6.383 11 C -0.577 4.577 12 H 0.090 0.910 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.734 3.266 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.198 1.198 19 C -0.052 4.052 20 C -0.084 4.084 21 C -0.090 4.090 22 C -0.169 4.169 23 C 0.030 3.970 24 O -0.247 6.247 25 C 0.317 3.683 26 F -0.183 7.183 27 F -0.185 7.185 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.170 0.830 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.545 -17.852 3.603 18.277 hybrid contribution -1.197 0.876 -0.240 1.502 sum -2.742 -16.976 3.363 17.522 Atomic orbital electron populations 1.20815 0.89933 1.03239 1.03170 1.20086 0.97142 0.91678 0.99528 1.21884 0.93383 0.98846 0.97203 1.20165 0.93712 0.93904 1.02640 1.17767 0.86508 0.82703 0.77154 1.90711 1.13641 1.87150 1.52480 1.50106 1.12733 1.05154 1.67697 1.23497 1.00571 0.77022 0.99786 1.19836 0.88977 0.90680 0.80619 1.86078 1.40327 1.95025 1.16861 1.21461 1.08126 1.10949 1.17205 0.91020 1.25062 0.96808 0.96830 0.94216 1.69392 1.24839 1.38658 1.20819 0.86394 0.79103 0.82444 0.78630 1.20994 1.19876 1.19840 1.24514 0.82228 0.98687 0.99818 1.21019 1.00723 0.89665 0.97034 1.20015 0.92273 0.96370 1.00382 1.20779 0.99789 0.93403 1.02886 1.18354 0.89440 0.83875 1.05311 1.86520 1.73865 1.36936 1.27414 1.23565 0.78136 0.90713 0.75910 1.93095 1.73802 1.71690 1.79668 1.93080 1.51278 1.94445 1.79687 0.90330 0.91149 0.90789 0.82987 0.90864 0.89326 0.75328 0.91571 0.89592 0.90618 0.84123 0.90577 0.91075 0.91106 0.81119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.80 36.00 0.32 -1.06 16 2 C -0.08 -1.22 5.73 -104.54 -0.60 -1.81 16 3 C -0.09 -1.56 8.72 -39.22 -0.34 -1.90 16 4 C -0.10 -1.82 5.88 -104.96 -0.62 -2.44 16 5 C 0.57 12.05 7.98 -12.44 -0.10 11.95 16 6 O -0.56 -13.13 17.10 5.30 0.09 -13.04 16 7 N -0.62 -13.26 3.60 -179.32 -0.65 -13.90 16 8 C 0.11 2.43 8.23 -2.97 -0.02 2.41 16 9 C 0.24 5.64 1.40 -90.84 -0.13 5.51 16 10 O -0.57 -14.51 13.49 -35.23 -0.48 -14.99 16 11 C -0.54 -13.14 8.61 -34.44 -0.30 -13.44 16 12 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16 14 N -0.90 -22.09 11.20 55.43 0.62 -21.47 16 15 Si 0.91 18.99 29.54 -169.99 -5.02 13.97 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 19 C 0.07 1.45 5.60 -2.83 -0.02 1.44 16 20 C -0.07 -1.04 9.23 -39.22 -0.36 -1.41 16 21 C -0.09 -1.25 5.73 -104.54 -0.60 -1.85 16 22 C -0.11 -1.20 8.80 36.01 0.32 -0.88 16 23 C 0.07 1.01 5.30 -39.02 -0.21 0.80 16 24 O -0.33 -3.68 8.44 -18.84 -0.16 -3.84 16 25 C 0.41 3.62 6.35 101.05 0.64 4.27 16 26 F -0.20 -2.23 15.17 2.25 0.03 -2.20 16 27 F -0.20 -2.16 15.17 2.25 0.03 -2.12 16 28 H 0.08 0.94 7.28 -51.93 -0.38 0.56 16 29 H 0.07 0.75 7.52 -51.93 -0.39 0.36 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.15 2.52 4.08 -52.48 -0.21 2.31 16 32 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 34 H 0.39 10.00 6.60 45.56 0.30 10.30 16 35 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 36 H 0.09 1.68 7.99 -51.93 -0.42 1.26 16 37 H 0.08 1.58 6.90 -51.93 -0.36 1.22 16 38 H 0.14 2.18 7.66 -52.49 -0.40 1.77 16 39 H 0.08 0.79 7.28 -51.93 -0.38 0.41 16 40 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 42 H 0.17 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -29.31 356.25 -6.54 -35.84 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.28 Total: 13.10 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.11 Total: 3.26 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.02 Total: -35.37 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.54 Total: -31.86 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.31 -6.54 -35.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186803137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.212 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds