Wall clock time and date at job start Sat Apr 11 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37704 * 119.95395 * 2 1 4 4 C 1.39731 * 119.91460 * 180.02562 * 3 2 1 5 5 C 1.47608 * 120.09208 * 180.02562 * 4 3 2 6 6 O 1.21579 * 120.00085 * 173.08503 * 5 4 3 7 7 N 1.34775 * 119.99580 * 353.09113 * 5 4 3 8 8 C 1.47583 * 134.48911 * 174.43455 * 7 5 4 9 9 C 1.53943 * 86.11631 * 155.35580 * 8 7 5 10 10 O 1.42908 * 113.74268 * 269.15611 * 9 8 7 11 11 C 1.50704 * 113.74364 * 137.95078 * 9 8 7 12 12 H 1.08000 * 119.99718 * 1.92775 * 11 9 8 13 13 C 1.37877 * 120.00152 * 181.92709 * 11 9 8 14 14 N 1.31521 * 119.99938 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00004 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47242 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.46965 * 299.99698 * 15 13 11 18 18 H 1.48496 * 109.47295 * 59.99740 * 15 13 11 19 19 C 1.47816 * 134.45876 * 354.29971 * 7 5 4 20 20 C 1.39734 * 119.82308 * 0.27871 * 4 3 2 21 21 C 1.37709 * 119.90670 * 359.46548 * 20 4 3 22 22 C 1.50704 * 119.95249 * 180.25301 * 21 20 4 23 23 C 1.38988 * 120.08957 * 0.51414 * 21 20 4 24 24 O 1.35712 * 119.91099 * 179.74655 * 23 21 20 25 25 C 1.42905 * 116.99472 * 270.01511 * 24 23 21 26 26 F 1.39896 * 109.47256 * 300.00098 * 25 24 23 27 27 F 1.39903 * 109.46854 * 60.00395 * 25 24 23 28 28 H 1.09000 * 109.47214 * 89.99836 * 1 2 3 29 29 H 1.09000 * 109.47027 * 209.99713 * 1 2 3 30 30 H 1.09002 * 109.47566 * 329.99789 * 1 2 3 31 31 H 1.08004 * 120.04329 * 0.02562 * 3 2 1 32 32 H 1.08993 * 113.77071 * 41.05802 * 8 7 5 33 33 H 1.08998 * 113.77033 * 269.65730 * 8 7 5 34 34 H 0.96705 * 113.99730 * 178.07468 * 10 9 8 35 35 H 0.96996 * 119.99901 * 179.97438 * 14 13 11 36 36 H 1.08993 * 113.77022 * 90.38219 * 19 7 5 37 37 H 1.09003 * 113.83242 * 318.91450 * 19 7 5 38 38 H 1.07998 * 120.04482 * 179.69951 * 20 4 3 39 39 H 1.08997 * 109.46999 * 270.25705 * 22 21 20 40 40 H 1.09001 * 109.46908 * 30.26181 * 22 21 20 41 41 H 1.08996 * 109.46825 * 150.25760 * 22 21 20 42 42 H 1.09007 * 109.46903 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1931 0.0000 4 6 3.5918 1.1921 -0.0005 5 6 4.3328 2.4688 0.0000 6 8 5.5420 2.4698 0.1263 7 7 3.6688 3.6333 -0.1393 8 6 4.0540 5.0568 -0.0819 9 6 2.8245 5.3173 -0.9708 10 8 3.1077 5.2767 -2.3709 11 6 2.0304 6.5329 -0.5670 12 1 2.3625 7.1451 0.2584 13 6 0.8801 6.8635 -1.2514 14 7 0.4760 6.1183 -2.2569 15 14 -0.1038 8.3706 -0.7513 16 1 -1.2873 8.5058 -1.6381 17 1 -0.5535 8.2235 0.6562 18 1 0.7476 9.5810 -0.8750 19 6 2.2625 3.9968 -0.4136 20 6 4.2859 -0.0206 -0.0070 21 6 3.5910 -1.2095 -0.0016 22 6 4.3386 -2.5180 -0.0028 23 6 2.2011 -1.2042 -0.0006 24 8 1.5199 -2.3780 -0.0005 25 6 1.1937 -2.9387 -1.2739 26 9 0.3942 -2.0400 -1.9882 27 9 2.3701 -3.1868 -1.9893 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6545 2.1284 0.0004 32 1 5.0035 5.2750 -0.5706 33 1 3.9766 5.4931 0.9140 34 1 2.3323 5.4107 -2.9331 35 1 -0.3335 6.3506 -2.7382 36 1 1.6577 4.1210 0.4846 37 1 1.7845 3.3703 -1.1667 38 1 5.3659 -0.0255 -0.0123 39 1 4.5180 -2.8330 -1.0307 40 1 5.2919 -2.3922 0.5104 41 1 3.7464 -3.2752 0.5111 42 1 0.6517 -3.8737 -1.1310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186803137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:18 Heat of formation + Delta-G solvation = -187.994223 kcal Electronic energy + Delta-G solvation = -30508.989473 eV Core-core repulsion = 25897.402806 eV Total energy + Delta-G solvation = -4611.586667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.06216 -48.20301 -41.83403 -40.88366 -39.24139 -38.08684 -35.92284 -34.77209 -34.15915 -32.82821 -30.34094 -28.64323 -28.04444 -27.43430 -27.02424 -26.39859 -24.04693 -22.14284 -21.69573 -20.18892 -19.96971 -19.28425 -19.14777 -18.80782 -17.98580 -17.65257 -17.03746 -16.91704 -16.52984 -16.42009 -15.95250 -15.24617 -15.10927 -15.06857 -14.90153 -14.67199 -14.48879 -14.43826 -14.22488 -14.08306 -13.92771 -13.88311 -13.78112 -13.43677 -13.40439 -13.18767 -12.97172 -12.88382 -12.74980 -12.72749 -12.48279 -12.24894 -12.22990 -11.74174 -11.44482 -11.06283 -10.65461 -10.26074 -9.91411 -9.80951 -9.58369 -8.26487 -6.43846 -0.57144 0.12670 1.41958 1.48971 1.51534 1.58322 1.81176 2.05784 2.41167 2.64339 2.69927 2.95738 3.28214 3.53053 3.56096 3.72118 3.72976 3.77863 4.00403 4.08763 4.16066 4.20729 4.37644 4.48142 4.49435 4.55969 4.62790 4.71987 4.72906 4.75022 4.80761 4.88540 5.06184 5.11952 5.16901 5.22059 5.22351 5.28161 5.30887 5.72110 5.91214 5.97580 6.61760 6.69246 6.99593 7.29440 7.42287 8.79553 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.003320 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.872253 B = 8432.131265 C = 9640.465545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.101 4.101 4 C -0.128 4.128 5 C 0.563 3.437 6 O -0.591 6.591 7 N -0.628 5.628 8 C 0.112 3.888 9 C 0.221 3.779 10 O -0.587 6.587 11 C -0.558 4.558 12 H 0.074 0.926 13 C 0.037 3.963 14 N -0.915 5.915 15 Si 0.967 3.033 16 H -0.283 1.283 17 H -0.266 1.266 18 H -0.276 1.276 19 C 0.089 3.911 20 C -0.072 4.072 21 C -0.090 4.090 22 C -0.109 4.109 23 C 0.081 3.919 24 O -0.326 6.326 25 C 0.399 3.601 26 F -0.215 7.215 27 F -0.213 7.213 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.388 0.612 35 H 0.276 0.724 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -19.377 4.073 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.131 4.131 5 C 0.355 3.645 6 O -0.475 6.475 7 N -0.360 5.360 8 C -0.010 4.010 9 C 0.180 3.820 10 O -0.399 6.399 11 C -0.596 4.596 12 H 0.092 0.908 13 C -0.164 4.164 14 N -0.555 5.555 15 Si 0.792 3.208 16 H -0.208 1.208 17 H -0.191 1.191 18 H -0.202 1.202 19 C -0.033 4.033 20 C -0.091 4.091 21 C -0.090 4.090 22 C -0.165 4.165 23 C 0.038 3.962 24 O -0.245 6.245 25 C 0.311 3.689 26 F -0.196 7.196 27 F -0.195 7.195 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.190 -19.753 4.334 20.473 hybrid contribution -0.695 1.355 -0.506 1.604 sum -3.885 -18.398 3.828 19.189 Atomic orbital electron populations 1.20853 0.88081 1.04376 1.03497 1.20345 0.98498 0.91271 0.98924 1.21809 0.92711 0.99534 0.97894 1.20007 0.94359 0.92886 1.05872 1.18318 0.86368 0.83589 0.76188 1.90671 1.15014 1.87709 1.54120 1.50128 1.12846 1.05158 1.67820 1.23540 0.99351 0.77706 1.00396 1.20121 0.90228 0.91871 0.79801 1.86065 1.40450 1.95207 1.18134 1.21678 1.08647 1.11590 1.17665 0.90781 1.25716 0.97521 0.99062 0.94144 1.69460 1.25081 1.39656 1.21284 0.85459 0.77615 0.79145 0.78534 1.20834 1.19099 1.20171 1.24318 0.82085 0.96936 0.99999 1.21084 1.00768 0.89856 0.97357 1.20326 0.92696 0.96893 0.99129 1.20847 1.00192 0.91868 1.03609 1.18455 0.89608 0.84736 1.03374 1.86511 1.73381 1.35528 1.29097 1.24551 0.77925 0.91920 0.74482 1.93073 1.74075 1.72536 1.79962 1.93063 1.52155 1.94414 1.79895 0.90260 0.89371 0.90352 0.83655 0.92054 0.87287 0.75796 0.91406 0.88213 0.90982 0.84346 0.89983 0.90018 0.89542 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 8.80 71.23 0.63 -1.83 16 2 C -0.09 -2.49 5.73 -19.81 -0.11 -2.61 16 3 C -0.10 -3.32 8.72 22.50 0.20 -3.13 16 4 C -0.13 -4.71 5.88 -20.08 -0.12 -4.83 16 5 C 0.56 24.61 7.98 86.72 0.69 25.30 16 6 O -0.59 -28.78 17.10 -3.96 -0.07 -28.85 16 7 N -0.63 -27.28 3.60 -843.34 -3.03 -30.31 16 8 C 0.11 4.92 8.23 86.48 0.71 5.63 16 9 C 0.22 10.52 1.40 -10.88 -0.02 10.50 16 10 O -0.59 -30.66 13.49 -148.98 -2.01 -32.67 16 11 C -0.56 -27.21 8.61 25.60 0.22 -26.99 16 12 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 13 C 0.04 1.76 5.40 84.65 0.46 2.22 16 14 N -0.91 -45.04 11.20 21.45 0.24 -44.80 16 15 Si 0.97 38.42 29.54 68.60 2.03 40.45 16 16 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 18 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 19 C 0.09 3.73 5.60 86.44 0.48 4.22 16 20 C -0.07 -2.29 9.23 22.51 0.21 -2.08 16 21 C -0.09 -2.37 5.73 -19.81 -0.11 -2.48 16 22 C -0.11 -2.07 8.80 71.24 0.63 -1.44 16 23 C 0.08 2.09 5.30 22.63 0.12 2.21 16 24 O -0.33 -6.22 8.44 -90.33 -0.76 -6.98 16 25 C 0.40 5.68 6.35 113.37 0.72 6.40 16 26 F -0.21 -4.20 15.17 44.97 0.68 -3.52 16 27 F -0.21 -3.91 15.17 44.97 0.68 -3.23 16 28 H 0.08 1.76 7.28 -2.39 -0.02 1.74 16 29 H 0.09 1.61 7.52 -2.39 -0.02 1.59 16 30 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.15 4.86 4.08 -2.91 -0.01 4.85 16 32 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.11 4.27 8.09 -2.39 -0.02 4.25 16 34 H 0.39 20.36 6.60 -74.05 -0.49 19.87 16 35 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 36 H 0.10 3.89 7.99 -2.39 -0.02 3.87 16 37 H 0.07 3.07 6.90 -2.39 -0.02 3.05 16 38 H 0.14 4.38 7.66 -2.91 -0.02 4.35 16 39 H 0.08 1.50 7.28 -2.39 -0.02 1.48 16 40 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 41 H 0.09 1.38 7.52 -2.39 -0.02 1.36 16 42 H 0.23 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -63.80 356.25 3.06 -60.74 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.60 Total: 38.09 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 4.70 Total: 11.09 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.79 Total: -75.12 kcal Atomic # 8 Polarization: -65.66 SS G_CDS: -2.84 Total: -68.50 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.36 Total: -6.74 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -63.80 3.06 -60.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186803137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.259 kcal (2) G-P(sol) polarization free energy of solvation -63.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds