Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99735 * 2 1 4 4 C 1.38212 * 119.99731 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00159 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46769 * 90.00302 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 5 9 9 N 1.34777 * 120.00128 * 180.27942 * 7 6 5 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99724 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99758 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47345 * 59.99929 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47320 * 300.00374 * 16 14 12 20 20 C 1.38262 * 119.99834 * 0.26141 * 4 3 2 21 21 C 1.38213 * 120.00100 * 359.48548 * 20 4 3 22 22 C 1.38212 * 119.99686 * 180.02562 * 2 1 3 23 23 S 1.76195 * 120.00504 * 0.02562 * 22 2 1 24 24 N 1.65599 * 107.21695 * 295.00149 * 23 22 2 25 25 O 1.42104 * 106.40319 * 48.53743 * 23 22 2 26 26 O 1.42095 * 106.40427 * 181.45994 * 23 22 2 27 27 H 1.08994 * 109.47041 * 89.99803 * 1 2 3 28 28 H 1.09006 * 109.46887 * 209.99801 * 1 2 3 29 29 H 1.08999 * 109.46874 * 329.99574 * 1 2 3 30 30 H 1.08002 * 120.00460 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47210 * 330.00660 * 5 4 3 32 32 H 1.08994 * 109.47121 * 210.00630 * 5 4 3 33 33 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 34 34 H 0.97000 * 119.99549 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47602 * 299.99940 * 10 9 7 36 36 H 1.09006 * 109.46868 * 59.99976 * 10 9 7 37 37 H 1.09000 * 109.47211 * 300.00689 * 11 10 9 38 38 H 1.09007 * 109.46376 * 60.00147 * 11 10 9 39 39 H 0.96999 * 119.99800 * 180.02562 * 15 14 12 40 40 H 1.08000 * 119.99647 * 179.72316 * 20 4 3 41 41 H 1.07998 * 119.99813 * 180.23277 * 21 20 4 42 42 H 0.97006 * 120.00195 * 149.99900 * 24 23 22 43 43 H 0.97001 * 119.99851 * 329.99409 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5024 -0.0011 6 7 4.5787 2.9255 1.3799 7 6 5.2462 4.0703 1.6257 8 8 5.6408 4.7544 0.7012 9 7 5.4763 4.4567 2.8962 10 6 6.2014 5.7013 3.1634 11 6 6.3255 5.9049 4.6748 12 6 7.0719 7.1849 4.9496 13 1 7.4224 7.7926 4.1284 14 6 7.3074 7.5801 6.2494 15 7 6.8810 6.8398 7.2492 16 14 8.2320 9.1670 6.5900 17 1 7.4910 10.3089 5.9965 18 1 8.3536 9.3640 8.0569 19 1 9.5870 9.0895 5.9875 20 6 4.2717 0.0000 -0.0065 21 6 3.5806 -1.1970 -0.0012 22 6 2.1981 -1.1970 -0.0005 23 16 1.3171 -2.7229 -0.0019 24 7 0.4925 -2.8141 1.4313 25 8 0.3352 -2.6185 -1.0238 26 8 2.2966 -3.7518 0.0325 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6583 2.1327 0.0004 31 1 3.7446 3.2620 -0.5148 32 1 5.2860 2.3720 -0.5154 33 1 4.2641 2.3796 2.1174 34 1 5.1611 3.9111 3.6337 35 1 7.1961 5.6445 2.7213 36 1 5.6575 6.5394 2.7276 37 1 5.3306 5.9619 5.1166 38 1 6.8692 5.0668 5.1108 39 1 7.0463 7.1181 8.1636 40 1 5.3516 0.0000 -0.0115 41 1 4.1207 -2.1323 -0.0021 42 1 -0.3472 -3.2976 1.4779 43 1 0.8492 -2.3842 2.2243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278346571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -91.786642 kcal Electronic energy + Delta-G solvation = -26122.427295 eV Core-core repulsion = 22101.145640 eV Total energy + Delta-G solvation = -4021.281655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35050 -39.42750 -37.66288 -36.28440 -35.62623 -34.68755 -33.91480 -33.12364 -32.84267 -31.87142 -29.56541 -27.61444 -26.75664 -24.54029 -22.94063 -21.75088 -21.08620 -20.65138 -19.98428 -18.66693 -18.23121 -17.89319 -17.08996 -16.52262 -16.42869 -16.09596 -15.56081 -15.29198 -15.10760 -14.75244 -14.53399 -14.45199 -13.92692 -13.83001 -13.62126 -13.58333 -13.05219 -12.68987 -12.64194 -12.57378 -12.50208 -12.40295 -12.29863 -12.27163 -11.71203 -11.30387 -11.22722 -11.03913 -10.81895 -10.67379 -10.34906 -10.16599 -9.79019 -9.56576 -9.32960 -9.29846 -9.16367 -8.51982 -8.31230 -6.11635 -4.14407 -0.10755 0.20575 0.77635 2.54229 2.76966 3.13605 3.29712 3.29750 3.33616 3.37681 3.49292 3.96785 4.09982 4.17836 4.32698 4.37473 4.62374 4.68561 4.78767 4.88321 5.07488 5.11566 5.17225 5.25481 5.39746 5.45262 5.46529 5.55909 5.62779 5.70030 5.98786 6.23726 6.29940 6.35459 6.41705 6.49669 6.73309 6.93012 7.12923 7.52681 7.59664 7.87170 8.21654 8.35034 8.87223 8.92888 9.50398 10.99962 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.001700 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.551849 B =16462.502606 C =16875.448618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.018 3.982 3 C -0.124 4.124 4 C -0.039 4.039 5 C 0.173 3.827 6 N -0.750 5.750 7 C 0.699 3.301 8 O -0.596 6.596 9 N -0.737 5.737 10 C 0.140 3.860 11 C 0.013 3.987 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.127 4.127 21 C -0.017 4.017 22 C -0.678 4.678 23 S 2.704 3.296 24 N -1.249 6.249 25 O -0.959 6.959 26 O -0.964 6.964 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.422 0.578 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 -21.324 -12.525 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.143 4.143 4 C -0.040 4.040 5 C 0.049 3.951 6 N -0.408 5.408 7 C 0.399 3.601 8 O -0.475 6.475 9 N -0.390 5.390 10 C 0.017 3.983 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.146 4.146 21 C -0.037 4.037 22 C -0.766 4.766 23 S 2.792 3.208 24 N -0.924 5.924 25 O -0.949 6.949 26 O -0.953 6.953 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.252 0.748 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.926 -21.267 -14.038 29.532 hybrid contribution 0.300 1.014 1.657 1.966 sum -14.627 -20.254 -12.380 27.882 Atomic orbital electron populations 1.21302 0.89910 1.04167 1.04916 1.19580 0.95943 0.91717 0.91124 1.21167 0.93595 0.98113 1.01408 1.20336 0.93973 0.95224 0.94433 1.20073 0.99709 0.91486 0.83831 1.45077 1.62917 1.25178 1.07618 1.16036 0.78978 0.80852 0.84226 1.90905 1.57497 1.55535 1.43544 1.45540 1.61064 1.27460 1.04957 1.21619 0.94465 0.82281 0.99943 1.19322 0.97741 0.97698 0.87653 1.21010 1.36226 1.06590 0.92216 0.92249 1.24998 0.95786 0.97336 0.96202 1.69943 1.46260 1.38186 0.98962 0.86557 0.80386 0.83467 0.77021 1.20101 1.21261 1.20102 1.21293 1.00873 0.91495 1.00972 1.21009 0.91755 0.99637 0.91265 1.30485 1.06274 1.18873 1.20957 1.01526 0.73344 0.73303 0.72612 1.53165 1.39128 1.71398 1.28674 1.93625 1.59517 1.86680 1.55083 1.93602 1.61657 1.54087 1.85945 0.88420 0.90909 0.89718 0.84495 0.90302 0.90255 0.77094 0.77349 0.92703 0.92722 0.95989 0.95977 0.92790 0.84416 0.83493 0.74796 0.75363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.73 36.01 0.31 -0.49 16 2 C 0.02 0.13 5.87 -104.62 -0.61 -0.49 16 3 C -0.12 -0.93 9.36 -39.59 -0.37 -1.30 16 4 C -0.04 -0.32 5.25 -104.62 -0.55 -0.87 16 5 C 0.17 1.73 5.80 -5.19 -0.03 1.70 16 6 N -0.75 -8.67 5.55 -66.41 -0.37 -9.04 16 7 C 0.70 11.61 8.57 -86.92 -0.74 10.87 16 8 O -0.60 -12.36 16.34 5.28 0.09 -12.27 16 9 N -0.74 -12.51 5.56 -65.22 -0.36 -12.88 16 10 C 0.14 2.93 5.61 -4.04 -0.02 2.91 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 12 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.13 -0.98 9.70 -39.58 -0.38 -1.36 16 21 C -0.02 -0.13 9.55 -39.58 -0.38 -0.51 16 22 C -0.68 -5.06 5.91 -39.58 -0.23 -5.29 16 23 S 2.70 19.29 5.48 -107.50 -0.59 18.71 16 24 N -1.25 -3.96 8.16 60.35 0.49 -3.47 16 25 O -0.96 -9.35 16.46 -57.17 -0.94 -10.29 16 26 O -0.96 -9.92 16.97 -57.17 -0.97 -10.89 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.31 5.34 -51.93 -0.28 0.04 16 29 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.40 3.60 8.48 -40.82 -0.35 3.25 16 34 H 0.39 5.68 8.49 -40.82 -0.35 5.33 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.15 0.97 7.33 -52.49 -0.38 0.59 16 42 H 0.42 0.61 8.96 -34.47 -0.31 0.30 16 43 H 0.42 0.54 8.96 -34.47 -0.31 0.23 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -37.49 377.37 -10.55 -48.04 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.73 Total: 3.06 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.57 Total: -7.73 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.50 Total: -50.48 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.83 Total: -33.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 19.29 SS G_CDS: -0.59 Total: 18.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.49 -10.55 -48.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278346571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.746 kcal (2) G-P(sol) polarization free energy of solvation -37.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds