Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99735 * 2 1 4 4 C 1.38212 * 119.99731 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00159 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46769 * 90.00302 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 5 9 9 N 1.34777 * 120.00128 * 180.27942 * 7 6 5 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99724 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99758 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47345 * 59.99929 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47320 * 300.00374 * 16 14 12 20 20 C 1.38262 * 119.99834 * 0.26141 * 4 3 2 21 21 C 1.38213 * 120.00100 * 359.48548 * 20 4 3 22 22 C 1.38212 * 119.99686 * 180.02562 * 2 1 3 23 23 S 1.76195 * 120.00504 * 0.02562 * 22 2 1 24 24 N 1.65599 * 107.21695 * 295.00149 * 23 22 2 25 25 O 1.42104 * 106.40319 * 48.53743 * 23 22 2 26 26 O 1.42095 * 106.40427 * 181.45994 * 23 22 2 27 27 H 1.08994 * 109.47041 * 89.99803 * 1 2 3 28 28 H 1.09006 * 109.46887 * 209.99801 * 1 2 3 29 29 H 1.08999 * 109.46874 * 329.99574 * 1 2 3 30 30 H 1.08002 * 120.00460 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47210 * 330.00660 * 5 4 3 32 32 H 1.08994 * 109.47121 * 210.00630 * 5 4 3 33 33 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 34 34 H 0.97000 * 119.99549 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47602 * 299.99940 * 10 9 7 36 36 H 1.09006 * 109.46868 * 59.99976 * 10 9 7 37 37 H 1.09000 * 109.47211 * 300.00689 * 11 10 9 38 38 H 1.09007 * 109.46376 * 60.00147 * 11 10 9 39 39 H 0.96999 * 119.99800 * 180.02562 * 15 14 12 40 40 H 1.08000 * 119.99647 * 179.72316 * 20 4 3 41 41 H 1.07998 * 119.99813 * 180.23277 * 21 20 4 42 42 H 0.97006 * 120.00195 * 149.99900 * 24 23 22 43 43 H 0.97001 * 119.99851 * 329.99409 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5024 -0.0011 6 7 4.5787 2.9255 1.3799 7 6 5.2462 4.0703 1.6257 8 8 5.6408 4.7544 0.7012 9 7 5.4763 4.4567 2.8962 10 6 6.2014 5.7013 3.1634 11 6 6.3255 5.9049 4.6748 12 6 7.0719 7.1849 4.9496 13 1 7.4224 7.7926 4.1284 14 6 7.3074 7.5801 6.2494 15 7 6.8810 6.8398 7.2492 16 14 8.2320 9.1670 6.5900 17 1 7.4910 10.3089 5.9965 18 1 8.3536 9.3640 8.0569 19 1 9.5870 9.0895 5.9875 20 6 4.2717 0.0000 -0.0065 21 6 3.5806 -1.1970 -0.0012 22 6 2.1981 -1.1970 -0.0005 23 16 1.3171 -2.7229 -0.0019 24 7 0.4925 -2.8141 1.4313 25 8 0.3352 -2.6185 -1.0238 26 8 2.2966 -3.7518 0.0325 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6583 2.1327 0.0004 31 1 3.7446 3.2620 -0.5148 32 1 5.2860 2.3720 -0.5154 33 1 4.2641 2.3796 2.1174 34 1 5.1611 3.9111 3.6337 35 1 7.1961 5.6445 2.7213 36 1 5.6575 6.5394 2.7276 37 1 5.3306 5.9619 5.1166 38 1 6.8692 5.0668 5.1108 39 1 7.0463 7.1181 8.1636 40 1 5.3516 0.0000 -0.0115 41 1 4.1207 -2.1323 -0.0021 42 1 -0.3472 -3.2976 1.4779 43 1 0.8492 -2.3842 2.2243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278346571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -122.479074 kcal Electronic energy + Delta-G solvation = -26123.758219 eV Core-core repulsion = 22101.145640 eV Total energy + Delta-G solvation = -4022.612579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23637 -40.48196 -38.34162 -36.98202 -36.86446 -36.08642 -34.82633 -34.36854 -33.63612 -32.73312 -31.27466 -28.14243 -27.77638 -26.29606 -23.59358 -22.96690 -22.30129 -21.99977 -20.54163 -19.52950 -19.17364 -18.41821 -18.39743 -17.65889 -17.40476 -17.03048 -16.62330 -16.50007 -16.13543 -15.93180 -15.47288 -15.34110 -15.14274 -14.98703 -14.73080 -14.30211 -14.25758 -13.84921 -13.46002 -13.30977 -13.22525 -13.20348 -13.17808 -13.06315 -12.91999 -12.88860 -12.52964 -12.29272 -12.20133 -11.87857 -11.69929 -11.52160 -11.28593 -11.21795 -10.59389 -10.42769 -10.39141 -9.88181 -9.74658 -8.23121 -6.33103 -0.67318 -0.41539 0.20413 1.42883 1.45012 1.52723 1.69701 2.12657 2.14721 2.36498 2.43772 2.69761 3.11788 3.36458 3.43095 3.45938 3.62928 3.76403 4.15612 4.19111 4.31698 4.46871 4.52951 4.54431 4.55040 4.67335 4.69916 4.85433 4.88254 4.97757 5.14810 5.17469 5.26203 5.30929 5.36215 5.38154 5.52002 5.60973 5.73598 5.79702 6.01035 6.18273 6.33213 6.80008 7.09736 7.36074 7.57148 8.88461 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.001700 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.551849 B =16462.502606 C =16875.448618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.015 3.985 3 C -0.126 4.126 4 C -0.042 4.042 5 C 0.175 3.825 6 N -0.728 5.728 7 C 0.700 3.300 8 O -0.638 6.638 9 N -0.732 5.732 10 C 0.160 3.840 11 C 0.024 3.976 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.130 4.130 21 C -0.027 4.027 22 C -0.679 4.679 23 S 2.724 3.276 24 N -1.233 6.233 25 O -0.986 6.986 26 O -0.997 6.997 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.150 0.850 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.432 0.568 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 -21.514 -12.290 29.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 C -0.145 4.145 4 C -0.043 4.043 5 C 0.052 3.948 6 N -0.385 5.385 7 C 0.400 3.600 8 O -0.520 6.520 9 N -0.387 5.387 10 C 0.036 3.964 11 C -0.014 4.014 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.149 4.149 21 C -0.046 4.046 22 C -0.767 4.767 23 S 2.813 3.187 24 N -0.913 5.913 25 O -0.976 6.976 26 O -0.986 6.986 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.247 0.753 34 H 0.243 0.757 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.265 0.735 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -15.707 -21.523 -13.790 30.001 hybrid contribution 0.463 0.995 1.575 1.920 sum -15.244 -20.527 -12.215 28.336 Atomic orbital electron populations 1.21418 0.88704 1.05656 1.05093 1.19786 0.96890 0.91363 0.90562 1.21346 0.93388 0.98856 1.00885 1.20145 0.94170 0.94282 0.95703 1.20115 0.99824 0.92396 0.82508 1.44880 1.61099 1.23455 1.09105 1.16105 0.79009 0.81664 0.83237 1.90880 1.59281 1.57202 1.44621 1.45209 1.60970 1.26552 1.05946 1.21081 0.94263 0.83771 0.97299 1.19125 0.96334 0.96239 0.89653 1.21444 1.36687 1.07797 0.92582 0.92272 1.25859 0.96603 1.00720 0.96017 1.70046 1.47280 1.39867 0.99362 0.85511 0.79187 0.79375 0.77051 1.19350 1.20655 1.19414 1.21425 1.01506 0.91325 1.00654 1.21168 0.92016 0.99984 0.91432 1.30512 1.06330 1.19017 1.20873 1.00681 0.72601 0.72648 0.72804 1.52776 1.39289 1.71448 1.27767 1.93591 1.60147 1.86964 1.56897 1.93567 1.62856 1.55530 1.86667 0.88825 0.89880 0.87924 0.83244 0.90499 0.90649 0.75305 0.75734 0.93803 0.93744 0.97234 0.97303 0.92563 0.83446 0.82816 0.73459 0.73945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.73 71.24 0.62 -0.74 16 2 C 0.02 0.19 5.87 -19.87 -0.12 0.08 16 3 C -0.13 -1.64 9.36 22.27 0.21 -1.44 16 4 C -0.04 -0.62 5.25 -19.86 -0.10 -0.73 16 5 C 0.18 3.29 5.80 85.63 0.50 3.78 16 6 N -0.73 -15.76 5.55 -482.30 -2.68 -18.43 16 7 C 0.70 22.70 8.57 179.05 1.53 24.23 16 8 O -0.64 -26.34 16.34 -4.01 -0.07 -26.40 16 9 N -0.73 -24.44 5.56 -478.52 -2.66 -27.10 16 10 C 0.16 6.77 5.61 86.38 0.48 7.25 16 11 C 0.02 1.19 5.09 29.85 0.15 1.34 16 12 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.01 0.38 5.46 84.65 0.46 0.84 16 15 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 16 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 21 C -0.03 -0.38 9.55 22.27 0.21 -0.17 16 22 C -0.68 -9.22 5.91 22.27 0.13 -9.09 16 23 S 2.72 36.06 5.48 -56.49 -0.31 35.75 16 24 N -1.23 -5.57 8.16 37.02 0.30 -5.27 16 25 O -0.99 -18.39 16.46 -128.00 -2.11 -20.50 16 26 O -1.00 -19.95 16.97 -128.00 -2.17 -22.12 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.54 5.34 -2.38 -0.01 0.53 16 29 H 0.10 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.08 1.52 8.09 -2.38 -0.02 1.50 16 32 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 33 H 0.41 6.61 8.48 -92.71 -0.79 5.83 16 34 H 0.41 11.33 8.49 -92.71 -0.79 10.55 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.15 1.91 7.33 -2.91 -0.02 1.88 16 42 H 0.43 0.39 8.96 -96.74 -0.87 -0.48 16 43 H 0.43 0.17 8.96 -96.75 -0.87 -0.69 16 Total: -1.00 -79.78 377.37 -5.06 -84.84 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -2.22 Total: 13.47 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.53 Total: -6.13 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.75 Total: -104.05 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: -4.34 Total: -69.02 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 36.06 SS G_CDS: -0.31 Total: 35.75 kcal Total: -79.78 -5.06 -84.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278346571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.634 kcal (2) G-P(sol) polarization free energy of solvation -79.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds