Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46857 * 296.67172 * 3 2 1 5 5 C 1.36869 * 119.99779 * 271.88875 * 4 3 2 6 6 H 1.08005 * 120.00198 * 192.99887 * 5 4 3 7 7 C 1.39046 * 120.00071 * 13.00534 * 5 4 3 8 8 N 1.31360 * 120.00034 * 13.96594 * 7 5 4 9 9 Si 1.86809 * 119.99987 * 193.96865 * 7 5 4 10 10 H 1.48495 * 109.46868 * 59.99824 * 9 7 5 11 11 H 1.48497 * 109.47177 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46820 * 299.99636 * 9 7 5 13 13 C 1.34777 * 120.00096 * 91.89833 * 4 3 2 14 14 O 1.21593 * 119.99865 * 184.58026 * 13 4 3 15 15 C 1.47727 * 119.99853 * 4.57464 * 13 4 3 16 16 C 1.39642 * 120.15365 * 308.21884 * 15 13 4 17 17 C 1.37939 * 119.84542 * 179.74476 * 16 15 13 18 18 C 1.38376 * 120.15016 * 0.53170 * 17 16 15 19 19 C 1.50697 * 119.84385 * 179.70048 * 18 17 16 20 20 C 1.53008 * 110.53447 * 92.85289 * 19 18 17 21 21 N 1.47312 * 110.59698 * 215.84580 * 19 18 17 22 22 C 1.34523 * 106.61885 * 118.53009 * 21 19 18 23 23 O 1.21541 * 123.76835 * 180.02562 * 22 21 19 24 24 N 1.33785 * 112.45813 * 359.97438 * 22 21 19 25 25 C 1.34764 * 111.64430 * 0.02562 * 24 22 21 26 26 O 1.21241 * 127.15789 * 180.02562 * 25 24 22 27 27 C 1.38372 * 120.30669 * 359.71976 * 18 17 16 28 28 C 1.37936 * 120.15010 * 0.02562 * 27 18 17 29 29 H 4.40634 * 5.51375 * 179.97438 * 4 1 2 30 30 H 1.08994 * 109.47441 * 176.67236 * 3 2 1 31 31 H 1.08999 * 109.47338 * 56.67108 * 3 2 1 32 32 H 0.97004 * 119.99835 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.07369 * 359.97438 * 16 15 13 34 34 H 1.08003 * 119.92070 * 180.25106 * 17 16 15 35 35 H 1.08995 * 109.47205 * 59.99589 * 20 19 18 36 36 H 1.08999 * 109.46993 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.46785 * 299.99773 * 20 19 18 38 38 H 0.97008 * 126.68968 * 298.50640 * 21 19 18 39 39 H 0.97005 * 124.17683 * 180.02562 * 24 22 21 40 40 H 1.08003 * 119.92636 * 180.02562 * 27 18 17 41 41 H 1.08010 * 120.07873 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.6191 1.2343 5 6 3.3254 0.1441 2.3542 6 1 3.8765 -0.2556 3.1927 7 6 2.8098 1.4341 2.4126 8 7 1.9187 1.8258 1.5305 9 14 3.3841 2.6102 3.7456 10 1 4.8501 2.8148 3.6269 11 1 2.6878 3.9125 3.5903 12 1 3.0705 2.0377 5.0795 13 6 3.3962 -1.9409 1.2669 14 8 3.7215 -2.4706 2.3119 15 6 3.2876 -2.7460 0.0331 16 6 2.1252 -2.6931 -0.7390 17 6 2.0327 -3.4434 -1.8927 18 6 3.0840 -4.2557 -2.2797 19 6 2.9729 -5.0777 -3.5379 20 6 3.5556 -4.3158 -4.7300 21 7 3.6468 -6.3767 -3.3694 22 6 2.7023 -7.3226 -3.5204 23 8 2.9220 -8.5154 -3.4413 24 7 1.4939 -6.8036 -3.7662 25 6 1.5291 -5.4569 -3.8010 26 8 0.5992 -4.7050 -4.0006 27 6 4.2367 -4.3169 -1.5166 28 6 4.3447 -3.5679 -0.3634 29 1 -1.0499 0.0001 0.0002 30 1 3.0089 1.0267 -0.0596 31 1 3.0096 -0.5638 -0.8586 32 1 1.5587 2.7257 1.5715 33 1 1.3021 -2.0632 -0.4354 34 1 1.1358 -3.4003 -2.4929 35 1 4.6067 -4.0965 -4.5424 36 1 3.4669 -4.9254 -5.6292 37 1 3.0087 -3.3830 -4.8674 38 1 4.5882 -6.5218 -3.1858 39 1 0.6916 -7.3315 -3.9024 40 1 5.0536 -4.9526 -1.8246 41 1 5.2451 -3.6162 0.2311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282142925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = 33.529124 kcal Electronic energy + Delta-G solvation = -29336.332868 eV Core-core repulsion = 25185.041361 eV Total energy + Delta-G solvation = -4151.291507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86501 -39.73549 -38.95795 -37.97254 -36.52524 -35.33610 -34.64729 -32.33879 -31.66595 -31.35951 -30.67953 -29.62786 -26.57484 -25.69318 -24.84470 -23.36078 -23.12848 -22.06803 -20.90247 -19.60727 -18.60234 -18.01099 -17.34672 -17.08708 -16.78252 -16.43605 -16.26021 -16.02794 -15.43009 -15.05578 -14.80702 -14.49037 -14.29401 -14.15596 -13.85602 -13.79991 -13.29125 -13.18611 -12.88260 -12.68129 -12.48586 -12.24058 -12.09098 -11.71330 -11.52673 -11.31085 -11.07311 -10.88791 -10.66383 -10.61784 -10.43995 -10.36461 -9.88007 -9.48771 -9.34655 -8.89490 -8.79023 -8.75160 -8.41480 -8.04787 -6.41081 -3.97274 1.08787 1.32323 1.55178 2.11483 2.71626 2.79553 3.09917 3.18010 3.20868 3.47836 3.60169 3.77422 3.95655 4.05497 4.11882 4.14488 4.48556 4.75907 4.90323 4.97557 5.04453 5.13378 5.19240 5.28581 5.42477 5.60423 5.62837 5.63300 5.70571 5.74182 5.98403 6.18057 6.25507 6.40870 6.43516 6.50659 6.63104 6.76207 6.78403 7.01203 7.04195 7.08739 7.42597 7.83117 7.88147 8.29710 8.79457 8.99073 9.20420 9.75198 10.53670 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002965 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.676050 B = 9439.755450 C =10099.084514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.097 4.097 3 C 0.228 3.772 4 N -0.425 5.425 5 C -0.310 4.310 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.472 3.528 14 O -0.580 6.580 15 C -0.077 4.077 16 C -0.097 4.097 17 C -0.113 4.113 18 C -0.106 4.106 19 C 0.169 3.831 20 C -0.143 4.143 21 N -0.714 5.714 22 C 0.708 3.292 23 O -0.546 6.546 24 N -0.679 5.679 25 C 0.538 3.462 26 O -0.454 6.454 27 C -0.102 4.102 28 C -0.082 4.082 29 H 0.199 0.801 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.272 0.728 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.441 0.559 39 H 0.433 0.567 40 H 0.121 0.879 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -8.913 -15.040 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.099 4.099 3 C 0.105 3.895 4 N -0.141 5.141 5 C -0.437 4.437 6 H 0.125 0.875 7 C -0.174 4.174 8 N -0.501 5.501 9 Si 0.758 3.242 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.261 3.739 14 O -0.465 6.465 15 C -0.080 4.080 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.108 4.108 19 C 0.078 3.922 20 C -0.201 4.201 21 N -0.378 5.378 22 C 0.407 3.593 23 O -0.419 6.419 24 N -0.350 5.350 25 C 0.323 3.677 26 O -0.323 6.323 27 C -0.121 4.121 28 C -0.101 4.101 29 H 0.216 0.784 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.286 0.714 39 H 0.275 0.725 40 H 0.139 0.861 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.717 -9.101 -14.599 17.289 hybrid contribution -0.198 0.457 0.726 0.880 sum 1.519 -8.645 -13.873 16.417 Atomic orbital electron populations 1.24246 0.95355 1.05624 1.03449 1.22866 0.94103 0.95632 0.97282 1.18500 0.84569 1.00570 0.85861 1.43663 1.54404 1.05480 1.10544 1.19746 1.33195 0.94772 0.96005 0.87471 1.25372 0.94987 0.98345 0.98651 1.69962 1.25046 1.19449 1.35648 0.85905 0.78912 0.78778 0.80627 1.19727 1.20853 1.19749 1.17915 0.86153 0.82003 0.87781 1.90640 1.53912 1.70465 1.31518 1.20422 0.94635 0.97532 0.95419 1.21843 0.98123 0.98122 0.93452 1.21222 0.98627 0.96128 0.97153 1.19271 0.96478 0.99937 0.95072 1.20141 0.89942 0.85262 0.96823 1.22022 1.02939 1.00844 0.94255 1.45667 1.11404 1.04829 1.75940 1.15806 0.80860 0.85330 0.77278 1.91061 1.81929 1.12894 1.56048 1.44302 1.12583 1.09800 1.68337 1.20622 0.90647 0.82018 0.74443 1.90821 1.41715 1.55295 1.44436 1.20590 0.96693 0.99671 0.95118 1.21147 0.98534 0.94900 0.95507 0.78411 0.86738 0.91844 0.91704 0.84018 0.84346 0.89767 0.91211 0.89234 0.71407 0.72477 0.86109 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.40 18.82 29.55 0.56 -4.85 16 2 C -0.10 -2.10 8.59 -37.12 -0.32 -2.42 16 3 C 0.23 4.92 4.75 -6.83 -0.03 4.89 16 4 N -0.42 -10.45 2.58 -119.05 -0.31 -10.76 16 5 C -0.31 -8.24 9.43 -15.00 -0.14 -8.38 16 6 H 0.11 2.99 7.30 -52.48 -0.38 2.60 16 7 C 0.03 0.77 5.13 -17.45 -0.09 0.68 16 8 N -0.86 -21.49 8.55 55.50 0.47 -21.01 16 9 Si 0.93 19.82 29.58 -169.99 -5.03 14.80 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.47 11.39 7.15 -12.38 -0.09 11.30 16 14 O -0.58 -16.02 16.69 5.28 0.09 -15.93 16 15 C -0.08 -1.46 4.79 -104.97 -0.50 -1.96 16 16 C -0.10 -1.68 7.67 -39.17 -0.30 -1.98 16 17 C -0.11 -1.61 9.16 -39.64 -0.36 -1.97 16 18 C -0.11 -1.26 4.90 -104.52 -0.51 -1.77 16 19 C 0.17 1.54 1.16 -133.25 -0.15 1.39 16 20 C -0.14 -0.97 8.97 37.16 0.33 -0.64 16 21 N -0.71 -5.87 5.37 -54.03 -0.29 -6.16 16 22 C 0.71 7.37 8.99 -88.03 -0.79 6.58 16 23 O -0.55 -7.44 18.04 5.33 0.10 -7.35 16 24 N -0.68 -6.14 5.70 -15.79 -0.09 -6.23 16 25 C 0.54 5.54 6.95 -10.56 -0.07 5.47 16 26 O -0.45 -5.66 15.86 5.59 0.09 -5.57 16 27 C -0.10 -1.22 9.33 -39.64 -0.37 -1.59 16 28 C -0.08 -1.28 9.75 -39.17 -0.38 -1.67 16 29 H 0.20 3.29 7.80 -54.10 -0.42 2.87 16 30 H 0.11 2.60 6.40 -51.93 -0.33 2.26 16 31 H 0.06 1.19 5.86 -51.93 -0.30 0.89 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.14 2.67 4.57 -52.49 -0.24 2.43 16 34 H 0.14 1.91 5.59 -52.48 -0.29 1.62 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.44 2.69 8.18 -40.82 -0.33 2.36 16 39 H 0.43 3.01 8.96 -40.82 -0.37 2.64 16 40 H 0.12 1.02 7.09 -52.48 -0.37 0.65 16 41 H 0.13 2.00 8.06 -52.48 -0.42 1.57 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -33.08 351.77 -6.77 -39.85 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.87 Total: 10.00 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.23 Total: 3.07 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.21 Total: -44.17 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: 0.27 Total: -28.85 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.08 -6.77 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282142925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.376 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds