Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46857 * 296.67172 * 3 2 1 5 5 C 1.36869 * 119.99779 * 271.88875 * 4 3 2 6 6 H 1.08005 * 120.00198 * 192.99887 * 5 4 3 7 7 C 1.39046 * 120.00071 * 13.00534 * 5 4 3 8 8 N 1.31360 * 120.00034 * 13.96594 * 7 5 4 9 9 Si 1.86809 * 119.99987 * 193.96865 * 7 5 4 10 10 H 1.48495 * 109.46868 * 59.99824 * 9 7 5 11 11 H 1.48497 * 109.47177 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46820 * 299.99636 * 9 7 5 13 13 C 1.34777 * 120.00096 * 91.89833 * 4 3 2 14 14 O 1.21593 * 119.99865 * 184.58026 * 13 4 3 15 15 C 1.47727 * 119.99853 * 4.57464 * 13 4 3 16 16 C 1.39642 * 120.15365 * 308.21884 * 15 13 4 17 17 C 1.37939 * 119.84542 * 179.74476 * 16 15 13 18 18 C 1.38376 * 120.15016 * 0.53170 * 17 16 15 19 19 C 1.50697 * 119.84385 * 179.70048 * 18 17 16 20 20 C 1.53008 * 110.53447 * 92.85289 * 19 18 17 21 21 N 1.47312 * 110.59698 * 215.84580 * 19 18 17 22 22 C 1.34523 * 106.61885 * 118.53009 * 21 19 18 23 23 O 1.21541 * 123.76835 * 180.02562 * 22 21 19 24 24 N 1.33785 * 112.45813 * 359.97438 * 22 21 19 25 25 C 1.34764 * 111.64430 * 0.02562 * 24 22 21 26 26 O 1.21241 * 127.15789 * 180.02562 * 25 24 22 27 27 C 1.38372 * 120.30669 * 359.71976 * 18 17 16 28 28 C 1.37936 * 120.15010 * 0.02562 * 27 18 17 29 29 H 4.40634 * 5.51375 * 179.97438 * 4 1 2 30 30 H 1.08994 * 109.47441 * 176.67236 * 3 2 1 31 31 H 1.08999 * 109.47338 * 56.67108 * 3 2 1 32 32 H 0.97004 * 119.99835 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.07369 * 359.97438 * 16 15 13 34 34 H 1.08003 * 119.92070 * 180.25106 * 17 16 15 35 35 H 1.08995 * 109.47205 * 59.99589 * 20 19 18 36 36 H 1.08999 * 109.46993 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.46785 * 299.99773 * 20 19 18 38 38 H 0.97008 * 126.68968 * 298.50640 * 21 19 18 39 39 H 0.97005 * 124.17683 * 180.02562 * 24 22 21 40 40 H 1.08003 * 119.92636 * 180.02562 * 27 18 17 41 41 H 1.08010 * 120.07873 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.6191 1.2343 5 6 3.3254 0.1441 2.3542 6 1 3.8765 -0.2556 3.1927 7 6 2.8098 1.4341 2.4126 8 7 1.9187 1.8258 1.5305 9 14 3.3841 2.6102 3.7456 10 1 4.8501 2.8148 3.6269 11 1 2.6878 3.9125 3.5903 12 1 3.0705 2.0377 5.0795 13 6 3.3962 -1.9409 1.2669 14 8 3.7215 -2.4706 2.3119 15 6 3.2876 -2.7460 0.0331 16 6 2.1252 -2.6931 -0.7390 17 6 2.0327 -3.4434 -1.8927 18 6 3.0840 -4.2557 -2.2797 19 6 2.9729 -5.0777 -3.5379 20 6 3.5556 -4.3158 -4.7300 21 7 3.6468 -6.3767 -3.3694 22 6 2.7023 -7.3226 -3.5204 23 8 2.9220 -8.5154 -3.4413 24 7 1.4939 -6.8036 -3.7662 25 6 1.5291 -5.4569 -3.8010 26 8 0.5992 -4.7050 -4.0006 27 6 4.2367 -4.3169 -1.5166 28 6 4.3447 -3.5679 -0.3634 29 1 -1.0499 0.0001 0.0002 30 1 3.0089 1.0267 -0.0596 31 1 3.0096 -0.5638 -0.8586 32 1 1.5587 2.7257 1.5715 33 1 1.3021 -2.0632 -0.4354 34 1 1.1358 -3.4003 -2.4929 35 1 4.6067 -4.0965 -4.5424 36 1 3.4669 -4.9254 -5.6292 37 1 3.0087 -3.3830 -4.8674 38 1 4.5882 -6.5218 -3.1858 39 1 0.6916 -7.3315 -3.9024 40 1 5.0536 -4.9526 -1.8246 41 1 5.2451 -3.6162 0.2311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282142925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = 9.631955 kcal Electronic energy + Delta-G solvation = -29337.369127 eV Core-core repulsion = 25185.041361 eV Total energy + Delta-G solvation = -4152.327766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.68750 -41.20848 -39.96005 -39.31155 -37.48905 -37.21317 -35.53133 -34.06756 -33.18245 -32.62998 -31.89993 -30.61611 -28.32687 -27.02286 -26.07189 -24.42180 -24.27354 -23.12315 -21.92691 -21.10727 -19.79554 -19.45160 -18.61032 -18.28894 -18.10441 -17.71742 -17.16800 -17.06083 -16.77323 -16.30992 -16.13559 -16.02503 -15.62679 -15.31003 -15.20663 -14.97252 -14.63437 -14.38332 -14.09598 -13.96961 -13.61301 -13.51036 -13.42084 -13.25760 -12.78557 -12.73096 -12.50344 -12.31115 -12.16833 -11.98940 -11.51279 -11.33940 -11.29306 -11.04789 -10.69601 -10.58506 -10.48769 -10.01687 -9.91690 -9.78317 -8.31720 -5.98267 -0.11084 0.35718 0.45921 1.36859 1.37884 1.41442 1.51234 1.81390 1.90764 2.04771 2.08381 2.31213 2.40231 2.67417 2.79499 3.02761 3.11722 3.24153 3.76789 3.83253 3.92691 3.99886 4.00953 4.18868 4.37939 4.49907 4.61528 4.66039 4.76452 4.80036 4.98384 5.01505 5.03499 5.19151 5.24707 5.31105 5.40694 5.43800 5.49041 5.75247 5.80526 5.85147 5.97313 6.30781 6.37897 7.05486 7.07834 7.14987 7.31917 7.87396 8.60047 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002965 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.676050 B = 9439.755450 C =10099.084514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.131 4.131 3 C 0.236 3.764 4 N -0.435 5.435 5 C -0.353 4.353 6 H 0.080 0.920 7 C 0.004 3.996 8 N -0.869 5.869 9 Si 0.992 3.008 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.280 1.280 13 C 0.464 3.536 14 O -0.631 6.631 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.109 4.109 18 C -0.086 4.086 19 C 0.176 3.824 20 C -0.142 4.142 21 N -0.697 5.697 22 C 0.710 3.290 23 O -0.577 6.577 24 N -0.671 5.671 25 C 0.537 3.463 26 O -0.476 6.476 27 C -0.082 4.082 28 C -0.085 4.085 29 H 0.231 0.769 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.275 0.725 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.453 0.547 39 H 0.441 0.559 40 H 0.168 0.832 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -9.565 -17.474 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.151 5.151 5 C -0.480 4.480 6 H 0.097 0.903 7 C -0.200 4.200 8 N -0.505 5.505 9 Si 0.815 3.185 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.206 1.206 13 C 0.255 3.745 14 O -0.520 6.520 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.087 4.087 19 C 0.085 3.915 20 C -0.200 4.200 21 N -0.362 5.362 22 C 0.409 3.591 23 O -0.453 6.453 24 N -0.342 5.342 25 C 0.323 3.677 26 O -0.346 6.346 27 C -0.100 4.100 28 C -0.104 4.104 29 H 0.247 0.753 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.301 0.699 39 H 0.285 0.715 40 H 0.185 0.815 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.098 -9.737 -17.078 19.770 hybrid contribution -0.378 0.567 1.388 1.546 sum 1.720 -9.170 -15.690 18.254 Atomic orbital electron populations 1.25055 0.96272 1.04214 1.01910 1.23076 0.94629 0.96948 0.98673 1.18443 0.84959 0.99740 0.85489 1.43842 1.54445 1.05858 1.10929 1.19676 1.35243 0.96299 0.96793 0.90257 1.26052 0.94537 0.98796 1.00573 1.70077 1.24650 1.19671 1.36142 0.85018 0.78845 0.76994 0.77600 1.19030 1.19420 1.20571 1.18762 0.84601 0.82116 0.89039 1.90572 1.55959 1.71520 1.33964 1.20083 0.97016 0.99293 0.94626 1.21620 0.97062 0.99088 0.94579 1.21250 0.99660 0.95902 0.95944 1.19532 0.95319 0.98411 0.95478 1.20126 0.89750 0.85329 0.96312 1.22100 1.03878 1.00536 0.93467 1.45585 1.11748 1.03767 1.75128 1.15855 0.81239 0.85035 0.76953 1.91056 1.82380 1.14316 1.57531 1.44229 1.12803 1.09551 1.67594 1.20759 0.90822 0.82129 0.74014 1.90823 1.42475 1.55804 1.45478 1.20950 0.97751 0.98355 0.92929 1.21259 0.97625 0.94685 0.96866 0.75271 0.88334 0.89441 0.91401 0.85986 0.83699 0.87702 0.89535 0.89541 0.69857 0.71455 0.81466 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.23 18.82 74.32 1.40 -8.83 16 2 C -0.13 -5.79 8.59 31.13 0.27 -5.53 16 3 C 0.24 10.52 4.75 84.57 0.40 10.92 16 4 N -0.44 -22.54 2.58 -648.83 -1.67 -24.22 16 5 C -0.35 -19.80 9.43 84.10 0.79 -19.00 16 6 H 0.08 4.77 7.30 -2.91 -0.02 4.74 16 7 C 0.00 0.21 5.13 84.96 0.44 0.64 16 8 N -0.87 -43.80 8.55 21.68 0.19 -43.61 16 9 Si 0.99 41.34 29.58 68.60 2.03 43.37 16 10 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.46 23.60 7.15 86.75 0.62 24.23 16 14 O -0.63 -37.13 16.69 -4.01 -0.07 -37.19 16 15 C -0.11 -4.16 4.79 -20.09 -0.10 -4.25 16 16 C -0.10 -3.64 7.67 22.54 0.17 -3.47 16 17 C -0.11 -2.93 9.16 22.23 0.20 -2.73 16 18 C -0.09 -1.76 4.90 -19.80 -0.10 -1.86 16 19 C 0.18 2.53 1.16 2.24 0.00 2.53 16 20 C -0.14 -1.31 8.97 71.98 0.65 -0.66 16 21 N -0.70 -8.59 5.37 -443.26 -2.38 -10.97 16 22 C 0.71 12.63 8.99 179.44 1.61 14.24 16 23 O -0.58 -14.39 18.04 -3.85 -0.07 -14.46 16 24 N -0.67 -10.36 5.70 -441.13 -2.52 -12.87 16 25 C 0.54 9.54 6.95 87.94 0.61 10.15 16 26 O -0.48 -10.80 15.86 -2.91 -0.05 -10.85 16 27 C -0.08 -1.67 9.33 22.23 0.21 -1.47 16 28 C -0.09 -2.59 9.75 22.54 0.22 -2.37 16 29 H 0.23 7.23 7.80 -4.42 -0.03 7.20 16 30 H 0.10 4.63 6.40 -2.39 -0.02 4.62 16 31 H 0.09 3.37 5.86 -2.39 -0.01 3.36 16 32 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 33 H 0.12 4.72 4.57 -2.91 -0.01 4.71 16 34 H 0.15 3.76 5.59 -2.91 -0.02 3.74 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.45 3.32 8.18 -92.70 -0.76 2.56 16 39 H 0.44 5.21 8.96 -92.70 -0.83 4.38 16 40 H 0.17 1.89 7.09 -2.91 -0.02 1.87 16 41 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -76.31 351.77 2.41 -73.90 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.46 Total: 24.34 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.40 Total: 12.55 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -6.38 Total: -91.67 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -0.18 Total: -62.50 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -76.31 2.41 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282142925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.530 kcal (2) G-P(sol) polarization free energy of solvation -76.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds