Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38134 * 120.03577 * 2 1 4 4 C 1.38260 * 120.07515 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.13856 * 359.95268 * 4 3 2 6 6 C 1.38101 * 120.07062 * 0.02562 * 5 4 3 7 7 C 1.38847 * 120.03787 * 180.22883 * 2 1 3 8 8 N 1.39933 * 120.07046 * 0.02562 * 7 2 1 9 9 C 1.34769 * 120.00097 * 202.57218 * 8 7 2 10 10 O 1.21293 * 120.00334 * 4.66704 * 9 8 7 11 11 C 1.50699 * 120.00109 * 184.66458 * 9 8 7 12 12 N 1.46502 * 109.47214 * 179.97438 * 11 9 8 13 13 C 1.36941 * 120.00162 * 274.99869 * 12 11 9 14 14 H 1.07998 * 120.00038 * 138.59881 * 13 12 11 15 15 C 1.38815 * 119.99789 * 318.60142 * 13 12 11 16 16 N 1.31621 * 119.99458 * 160.55276 * 15 13 12 17 17 Si 1.86800 * 119.99942 * 340.55173 * 15 13 12 18 18 H 1.48501 * 109.46783 * 95.38693 * 17 15 13 19 19 H 1.48494 * 109.46820 * 215.38002 * 17 15 13 20 20 H 1.48492 * 109.47285 * 335.38418 * 17 15 13 21 21 S 1.65599 * 119.99974 * 95.00037 * 12 11 9 22 22 O 1.42104 * 106.40168 * 208.55987 * 21 12 11 23 23 O 1.42101 * 106.40273 * 341.48133 * 21 12 11 24 24 N 1.65606 * 107.21841 * 95.02152 * 21 12 11 25 25 C 1.46498 * 119.99770 * 93.28172 * 24 21 12 26 26 C 1.46498 * 119.99870 * 273.28175 * 24 21 12 27 27 H 1.09000 * 109.46959 * 89.99857 * 1 2 3 28 28 H 1.08996 * 109.47015 * 209.99621 * 1 2 3 29 29 H 1.09000 * 109.47352 * 330.00275 * 1 2 3 30 30 H 1.07998 * 119.96725 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.93370 * 179.97438 * 4 3 2 32 32 H 1.07999 * 119.96557 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.03407 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99737 * 22.57540 * 8 7 2 35 35 H 1.08994 * 109.47350 * 300.00037 * 11 9 8 36 36 H 1.08999 * 109.46920 * 60.00512 * 11 9 8 37 37 H 0.97007 * 119.99544 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47389 * 4.33098 * 25 24 21 39 39 H 1.09000 * 109.46610 * 124.33249 * 25 24 21 40 40 H 1.09001 * 109.46735 * 244.32631 * 25 24 21 41 41 H 1.08999 * 109.47229 * 89.99995 * 26 24 21 42 42 H 1.08991 * 109.47162 * 210.00073 * 26 24 21 43 43 H 1.09002 * 109.46959 * 330.00164 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1968 -0.0005 5 6 4.2763 0.0012 -0.0001 6 6 3.5909 -1.1978 0.0004 7 6 2.2020 -1.2020 -0.0048 8 7 1.5047 -2.4151 -0.0102 9 6 2.1030 -3.5383 0.4333 10 8 3.2146 -3.4835 0.9154 11 6 1.3909 -4.8625 0.3303 12 7 2.2454 -5.9202 0.8757 13 6 3.1896 -6.5151 0.0821 14 1 4.1694 -6.7339 0.4801 15 6 2.8872 -6.8369 -1.2339 16 7 3.8565 -7.0430 -2.1003 17 14 1.1049 -6.9775 -1.7753 18 1 0.6654 -5.6899 -2.3703 19 1 0.9783 -8.0584 -2.7856 20 1 0.2544 -7.2959 -0.6005 21 16 2.0693 -6.3964 2.4519 22 8 3.3431 -6.8637 2.8746 23 8 1.3669 -5.3515 3.1108 24 7 1.0634 -7.7119 2.4572 25 6 1.6255 -9.0640 2.4121 26 6 -0.3886 -7.5235 2.5068 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6585 2.1312 0.0004 31 1 4.1193 2.1331 -0.0010 32 1 5.3562 0.0052 -0.0001 33 1 4.1344 -2.1311 0.0003 34 1 0.5906 -2.4477 -0.3332 35 1 0.4600 -4.8194 0.8955 36 1 1.1715 -5.0765 -0.7157 37 1 3.6452 -7.2683 -3.0199 38 1 2.7131 -9.0071 2.4566 39 1 1.2567 -9.6392 3.2614 40 1 1.3247 -9.5518 1.4849 41 1 -0.7812 -7.4560 1.4922 42 1 -0.8475 -8.3695 3.0184 43 1 -0.6175 -6.6047 3.0468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283593218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -54.757725 kcal Electronic energy + Delta-G solvation = -29055.464985 eV Core-core repulsion = 25035.789024 eV Total energy + Delta-G solvation = -4019.675961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36646 -38.35814 -36.27784 -35.64996 -35.41277 -34.78601 -34.48903 -32.42167 -32.10456 -29.89260 -27.65995 -27.48462 -26.54219 -24.28806 -23.87330 -22.75547 -21.22433 -20.25592 -18.54264 -18.00115 -17.46693 -17.00129 -16.60245 -16.42664 -15.68386 -15.52644 -15.08912 -15.02865 -14.35356 -14.14112 -13.89016 -13.76894 -13.60380 -13.46219 -13.04397 -12.97862 -12.67956 -12.42846 -12.41452 -12.27271 -12.17108 -11.91840 -11.80892 -11.36189 -11.27551 -11.19583 -11.05264 -10.94168 -10.83195 -10.80664 -10.53036 -10.22993 -10.21603 -9.50493 -9.04283 -8.55571 -8.48690 -8.21445 -7.76187 -6.59179 -4.19339 1.46665 1.51746 1.60833 2.84624 3.00679 3.05377 3.13624 3.30473 3.78184 3.96009 4.02357 4.39975 4.71071 4.87732 4.96588 5.07325 5.24283 5.27449 5.32698 5.38947 5.42934 5.53080 5.61623 5.63956 5.68052 5.73224 5.81503 5.87841 5.98813 5.99465 6.02594 6.25447 6.28862 6.44257 6.50359 6.58631 6.68502 6.71611 6.82003 7.17353 7.30692 7.47871 7.68207 8.27700 8.55681 8.92682 8.93407 10.49248 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.004367 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.383531 B = 6409.523715 C = 6941.633380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.130 4.130 3 C -0.103 4.103 4 C -0.147 4.147 5 C -0.103 4.103 6 C -0.133 4.133 7 C 0.162 3.838 8 N -0.678 5.678 9 C 0.504 3.496 10 O -0.485 6.485 11 C 0.102 3.898 12 N -0.837 5.837 13 C -0.280 4.280 14 H 0.117 0.883 15 C 0.067 3.933 16 N -0.840 5.840 17 Si 0.864 3.136 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.253 1.253 21 S 2.713 3.287 22 O -0.976 6.976 23 O -1.014 7.014 24 N -1.020 6.020 25 C 0.094 3.906 26 C 0.088 3.912 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.156 0.844 34 H 0.407 0.593 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.277 0.723 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 7.691 0.395 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.166 4.166 5 C -0.122 4.122 6 C -0.153 4.153 7 C 0.067 3.933 8 N -0.324 5.324 9 C 0.289 3.711 10 O -0.356 6.356 11 C -0.029 4.029 12 N -0.665 5.665 13 C -0.420 4.420 14 H 0.134 0.866 15 C -0.145 4.145 16 N -0.476 5.476 17 Si 0.691 3.309 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.176 1.176 21 S 2.734 3.266 22 O -0.960 6.960 23 O -0.997 6.997 24 N -0.857 5.857 25 C -0.052 4.052 26 C -0.058 4.058 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.173 0.827 34 H 0.242 0.758 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.168 7.885 1.559 12.192 hybrid contribution -1.573 -0.337 -1.092 1.944 sum -10.740 7.548 0.467 13.136 Atomic orbital electron populations 1.20700 0.91309 1.02882 1.02052 1.19561 0.95838 0.91867 1.05997 1.20719 0.94143 0.96493 1.00791 1.21028 0.94190 0.97898 1.03505 1.21077 0.99902 0.91976 0.99211 1.21730 0.92744 1.00462 1.00391 1.17741 0.91725 0.84740 0.99130 1.43787 1.17382 1.06754 1.64479 1.21701 0.87391 0.85355 0.76649 1.90620 1.18809 1.85461 1.40681 1.21324 0.93957 0.85650 1.01997 1.53302 1.43175 1.38364 1.31704 1.19022 0.93038 1.36485 0.93456 0.86601 1.25691 0.97716 0.94848 0.96265 1.69840 1.32410 1.41469 1.03930 0.87105 0.86066 0.78118 0.79602 1.19992 1.20830 1.17645 1.06096 0.73216 0.72364 0.74964 1.93468 1.40131 1.81210 1.81192 1.93416 1.74953 1.56385 1.74993 1.58459 1.16151 1.21145 1.89906 1.21403 1.00244 0.83137 1.00414 1.21400 0.81111 1.02329 1.01008 0.91355 0.91757 0.91291 0.86217 0.86470 0.85973 0.82690 0.75784 0.88407 0.88900 0.91245 0.89432 0.93432 0.93110 0.93621 0.91926 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.44 36.01 0.34 -0.79 16 2 C -0.13 -1.75 5.90 -104.43 -0.62 -2.37 16 3 C -0.10 -1.27 9.70 -39.61 -0.38 -1.65 16 4 C -0.15 -1.88 10.04 -39.55 -0.40 -2.28 16 5 C -0.10 -1.53 10.04 -39.61 -0.40 -1.93 16 6 C -0.13 -2.38 8.76 -39.39 -0.34 -2.73 16 7 C 0.16 2.69 6.45 -83.69 -0.54 2.15 16 8 N -0.68 -11.15 5.02 -9.86 -0.05 -11.20 16 9 C 0.50 10.38 7.71 -10.99 -0.08 10.30 16 10 O -0.48 -11.81 13.34 5.55 0.07 -11.73 16 11 C 0.10 2.04 4.78 -5.19 -0.02 2.01 16 12 N -0.84 -19.46 1.99 -61.09 -0.12 -19.58 16 13 C -0.28 -7.26 9.40 -15.06 -0.14 -7.41 16 14 H 0.12 3.40 7.73 -52.49 -0.41 2.99 16 15 C 0.07 1.68 5.35 -17.43 -0.09 1.59 16 16 N -0.84 -22.43 13.97 55.49 0.78 -21.66 16 17 Si 0.86 17.93 25.02 -169.99 -4.25 13.68 16 18 H -0.27 -5.28 6.73 56.52 0.38 -4.90 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.25 -4.84 6.88 56.52 0.39 -4.45 16 21 S 2.71 62.25 6.03 -107.50 -0.65 61.60 16 22 O -0.98 -25.44 15.66 -57.17 -0.90 -26.34 16 23 O -1.01 -23.79 15.61 -57.17 -0.89 -24.68 16 24 N -1.02 -19.13 3.64 -129.21 -0.47 -19.60 16 25 C 0.09 1.57 10.71 59.85 0.64 2.22 16 26 C 0.09 1.32 10.72 59.85 0.64 1.96 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.63 6.96 -51.93 -0.36 0.27 16 29 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.16 3.22 5.58 -52.49 -0.29 2.93 16 34 H 0.41 5.08 7.32 -40.82 -0.30 4.79 16 35 H 0.10 1.62 7.47 -51.93 -0.39 1.23 16 36 H 0.09 1.79 3.34 -51.93 -0.17 1.61 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.09 1.61 6.77 -51.93 -0.35 1.26 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 42 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.07 1.09 7.05 -51.93 -0.37 0.73 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -33.42 363.18 -8.00 -41.42 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.59 Total: 11.53 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.40 Total: 1.08 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: 0.13 Total: -72.04 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -1.71 Total: -62.75 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.25 Total: 13.68 kcal Atomic # 16 Polarization: 62.25 SS G_CDS: -0.65 Total: 61.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.42 -8.00 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283593218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.335 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds