Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38134 * 120.03577 * 2 1 4 4 C 1.38260 * 120.07515 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.13856 * 359.95268 * 4 3 2 6 6 C 1.38101 * 120.07062 * 0.02562 * 5 4 3 7 7 C 1.38847 * 120.03787 * 180.22883 * 2 1 3 8 8 N 1.39933 * 120.07046 * 0.02562 * 7 2 1 9 9 C 1.34769 * 120.00097 * 202.57218 * 8 7 2 10 10 O 1.21293 * 120.00334 * 4.66704 * 9 8 7 11 11 C 1.50699 * 120.00109 * 184.66458 * 9 8 7 12 12 N 1.46502 * 109.47214 * 179.97438 * 11 9 8 13 13 C 1.36941 * 120.00162 * 274.99869 * 12 11 9 14 14 H 1.07998 * 120.00038 * 138.59881 * 13 12 11 15 15 C 1.38815 * 119.99789 * 318.60142 * 13 12 11 16 16 N 1.31621 * 119.99458 * 160.55276 * 15 13 12 17 17 Si 1.86800 * 119.99942 * 340.55173 * 15 13 12 18 18 H 1.48501 * 109.46783 * 95.38693 * 17 15 13 19 19 H 1.48494 * 109.46820 * 215.38002 * 17 15 13 20 20 H 1.48492 * 109.47285 * 335.38418 * 17 15 13 21 21 S 1.65599 * 119.99974 * 95.00037 * 12 11 9 22 22 O 1.42104 * 106.40168 * 208.55987 * 21 12 11 23 23 O 1.42101 * 106.40273 * 341.48133 * 21 12 11 24 24 N 1.65606 * 107.21841 * 95.02152 * 21 12 11 25 25 C 1.46498 * 119.99770 * 93.28172 * 24 21 12 26 26 C 1.46498 * 119.99870 * 273.28175 * 24 21 12 27 27 H 1.09000 * 109.46959 * 89.99857 * 1 2 3 28 28 H 1.08996 * 109.47015 * 209.99621 * 1 2 3 29 29 H 1.09000 * 109.47352 * 330.00275 * 1 2 3 30 30 H 1.07998 * 119.96725 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.93370 * 179.97438 * 4 3 2 32 32 H 1.07999 * 119.96557 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.03407 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99737 * 22.57540 * 8 7 2 35 35 H 1.08994 * 109.47350 * 300.00037 * 11 9 8 36 36 H 1.08999 * 109.46920 * 60.00512 * 11 9 8 37 37 H 0.97007 * 119.99544 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47389 * 4.33098 * 25 24 21 39 39 H 1.09000 * 109.46610 * 124.33249 * 25 24 21 40 40 H 1.09001 * 109.46735 * 244.32631 * 25 24 21 41 41 H 1.08999 * 109.47229 * 89.99995 * 26 24 21 42 42 H 1.08991 * 109.47162 * 210.00073 * 26 24 21 43 43 H 1.09002 * 109.46959 * 330.00164 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1968 -0.0005 5 6 4.2763 0.0012 -0.0001 6 6 3.5909 -1.1978 0.0004 7 6 2.2020 -1.2020 -0.0048 8 7 1.5047 -2.4151 -0.0102 9 6 2.1030 -3.5383 0.4333 10 8 3.2146 -3.4835 0.9154 11 6 1.3909 -4.8625 0.3303 12 7 2.2454 -5.9202 0.8757 13 6 3.1896 -6.5151 0.0821 14 1 4.1694 -6.7339 0.4801 15 6 2.8872 -6.8369 -1.2339 16 7 3.8565 -7.0430 -2.1003 17 14 1.1049 -6.9775 -1.7753 18 1 0.6654 -5.6899 -2.3703 19 1 0.9783 -8.0584 -2.7856 20 1 0.2544 -7.2959 -0.6005 21 16 2.0693 -6.3964 2.4519 22 8 3.3431 -6.8637 2.8746 23 8 1.3669 -5.3515 3.1108 24 7 1.0634 -7.7119 2.4572 25 6 1.6255 -9.0640 2.4121 26 6 -0.3886 -7.5235 2.5068 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6585 2.1312 0.0004 31 1 4.1193 2.1331 -0.0010 32 1 5.3562 0.0052 -0.0001 33 1 4.1344 -2.1311 0.0003 34 1 0.5906 -2.4477 -0.3332 35 1 0.4600 -4.8194 0.8955 36 1 1.1715 -5.0765 -0.7157 37 1 3.6452 -7.2683 -3.0199 38 1 2.7131 -9.0071 2.4566 39 1 1.2567 -9.6392 3.2614 40 1 1.3247 -9.5518 1.4849 41 1 -0.7812 -7.4560 1.4922 42 1 -0.8475 -8.3695 3.0184 43 1 -0.6175 -6.6047 3.0468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283593218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -80.739231 kcal Electronic energy + Delta-G solvation = -29056.591627 eV Core-core repulsion = 25035.789024 eV Total energy + Delta-G solvation = -4020.802603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73296 -39.68514 -38.22640 -37.35029 -36.91211 -36.70844 -35.89444 -33.97282 -33.46743 -31.19257 -29.03450 -28.81556 -27.60329 -26.10972 -25.33595 -24.04833 -22.34611 -21.67898 -20.34895 -19.54131 -19.13075 -18.54779 -18.20281 -18.06132 -17.33675 -16.74817 -16.67070 -16.38250 -15.73018 -15.48580 -15.35591 -15.17958 -14.91014 -14.71452 -14.67132 -14.43578 -14.10762 -13.96865 -13.77066 -13.52240 -13.27928 -13.22998 -13.12658 -13.02042 -12.99948 -12.72355 -12.50482 -12.40626 -12.37871 -12.26548 -12.12443 -11.82479 -11.56837 -11.18027 -10.75131 -10.05783 -9.90507 -9.65014 -8.97320 -8.46829 -6.18859 -0.26613 0.31532 0.46428 1.21719 1.36734 1.46541 1.61096 1.92222 2.14570 2.23361 2.67501 2.84037 2.88673 3.47923 3.64319 3.91502 3.95889 3.98456 4.01870 4.08508 4.25505 4.41866 4.51050 4.54502 4.61787 4.62099 4.77153 4.83691 4.85698 4.91831 4.97523 4.99812 5.04427 5.12701 5.29648 5.38261 5.48179 5.57247 5.58936 5.65614 5.79507 6.14334 6.19762 6.42251 6.96453 7.03745 7.12152 8.67003 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.004367 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.383531 B = 6409.523715 C = 6941.633380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.138 4.138 5 C -0.119 4.119 6 C -0.170 4.170 7 C 0.130 3.870 8 N -0.660 5.660 9 C 0.493 3.507 10 O -0.539 6.539 11 C 0.091 3.909 12 N -0.851 5.851 13 C -0.303 4.303 14 H 0.051 0.949 15 C 0.020 3.980 16 N -0.902 5.902 17 Si 0.925 3.075 18 H -0.246 1.246 19 H -0.285 1.285 20 H -0.219 1.219 21 S 2.749 3.251 22 O -1.019 7.019 23 O -1.016 7.016 24 N -1.018 6.018 25 C 0.088 3.912 26 C 0.076 3.924 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.426 0.574 35 H 0.139 0.861 36 H 0.104 0.896 37 H 0.280 0.720 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 9.493 0.637 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.156 4.156 5 C -0.137 4.137 6 C -0.190 4.190 7 C 0.035 3.965 8 N -0.307 5.307 9 C 0.280 3.720 10 O -0.414 6.414 11 C -0.040 4.040 12 N -0.680 5.680 13 C -0.439 4.439 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.539 5.539 17 Si 0.746 3.254 18 H -0.171 1.171 19 H -0.211 1.211 20 H -0.141 1.141 21 S 2.766 3.234 22 O -1.003 7.003 23 O -1.000 7.000 24 N -0.859 5.859 25 C -0.058 4.058 26 C -0.069 4.069 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.128 0.872 34 H 0.265 0.735 35 H 0.156 0.844 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.443 9.733 1.724 17.502 hybrid contribution 0.063 -0.779 -0.965 1.242 sum -14.380 8.954 0.759 16.957 Atomic orbital electron populations 1.20826 0.88354 1.04092 1.03730 1.20016 0.97961 0.90751 1.03739 1.21258 0.94083 0.97649 0.98773 1.21435 0.94924 0.97998 1.01260 1.21242 1.00538 0.92091 0.99854 1.21558 0.94057 0.99891 1.03490 1.17976 0.91398 0.85804 1.01320 1.43507 1.17994 1.05908 1.63331 1.21976 0.86904 0.86755 0.76409 1.90624 1.21024 1.86344 1.43435 1.21702 0.94692 0.84369 1.03211 1.53078 1.44058 1.40076 1.30832 1.18344 0.92104 1.38689 0.94778 0.93078 1.26396 1.03015 0.93815 0.95369 1.69984 1.35359 1.44105 1.04464 0.86149 0.79780 0.79202 0.80242 1.17147 1.21104 1.14067 1.03823 0.72686 0.72855 0.74072 1.93429 1.42899 1.82099 1.81864 1.93420 1.74951 1.56895 1.74716 1.57930 1.17797 1.20489 1.89661 1.21592 0.98798 0.82269 1.03113 1.21791 0.78035 1.04234 1.02840 0.89285 0.91661 0.89028 0.82134 0.83098 0.85378 0.87180 0.73479 0.84360 0.87827 0.91045 0.92292 0.89476 0.91400 0.91840 0.88169 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.44 71.24 0.67 -1.11 16 2 C -0.12 -2.97 5.90 -19.74 -0.12 -3.09 16 3 C -0.10 -2.08 9.70 22.25 0.22 -1.87 16 4 C -0.14 -3.19 10.04 22.29 0.22 -2.97 16 5 C -0.12 -3.63 10.04 22.25 0.22 -3.41 16 6 C -0.17 -6.51 8.76 22.39 0.20 -6.31 16 7 C 0.13 4.33 6.45 38.15 0.25 4.57 16 8 N -0.66 -21.56 5.02 -303.50 -1.52 -23.08 16 9 C 0.49 20.99 7.71 87.66 0.68 21.67 16 10 O -0.54 -28.45 13.34 -3.07 -0.04 -28.49 16 11 C 0.09 3.55 4.78 85.63 0.41 3.96 16 12 N -0.85 -40.55 1.99 -347.18 -0.69 -41.24 16 13 C -0.30 -16.89 9.40 84.03 0.79 -16.10 16 14 H 0.05 3.39 7.73 -2.91 -0.02 3.37 16 15 C 0.02 1.08 5.35 84.86 0.45 1.53 16 16 N -0.90 -51.66 13.97 21.65 0.30 -51.36 16 17 Si 0.93 36.09 25.02 68.60 1.72 37.81 16 18 H -0.25 -8.49 6.73 99.48 0.67 -7.83 16 19 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.22 -7.24 6.88 99.48 0.68 -6.56 16 21 S 2.75 126.85 6.03 -56.49 -0.34 126.51 16 22 O -1.02 -55.91 15.66 -128.00 -2.00 -57.91 16 23 O -1.02 -46.66 15.61 -128.00 -2.00 -48.66 16 24 N -1.02 -35.67 3.64 -562.71 -2.05 -37.72 16 25 C 0.09 2.75 10.71 127.77 1.37 4.12 16 26 C 0.08 1.90 10.72 127.77 1.37 3.27 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.03 6.96 -2.39 -0.02 1.01 16 29 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.11 5.20 5.58 -2.91 -0.02 5.19 16 34 H 0.43 9.79 7.32 -92.71 -0.68 9.11 16 35 H 0.14 4.16 7.47 -2.39 -0.02 4.14 16 36 H 0.10 3.81 3.34 -2.39 -0.01 3.80 16 37 H 0.28 14.66 8.31 -92.70 -0.77 13.89 16 38 H 0.06 2.21 6.77 -2.39 -0.02 2.19 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.41 7.92 -2.39 -0.02 1.39 16 42 H 0.10 1.84 8.07 -2.39 -0.02 1.82 16 43 H 0.08 1.90 7.05 -2.39 -0.02 1.88 16 Total: -1.00 -83.24 363.18 0.41 -82.83 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.31 Total: 37.04 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.73 Total: 4.26 kcal Atomic # 7 Polarization: -149.43 SS G_CDS: -3.96 Total: -153.39 kcal Atomic # 8 Polarization: -131.03 SS G_CDS: -4.04 Total: -135.07 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 1.72 Total: 37.81 kcal Atomic # 16 Polarization: 126.85 SS G_CDS: -0.34 Total: 126.51 kcal Total: -83.24 0.41 -82.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283593218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.094 kcal (2) G-P(sol) polarization free energy of solvation -83.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds