Wall clock time and date at job start Sat Apr 11 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38303 * 119.96135 * 2 1 4 4 C 1.38269 * 120.14320 * 179.97438 * 3 2 1 5 5 S 1.76194 * 119.96554 * 179.97438 * 4 3 2 6 6 N 1.65606 * 107.21977 * 269.98111 * 5 4 3 7 7 O 1.42100 * 106.40305 * 23.52196 * 5 4 3 8 8 O 1.42097 * 106.40150 * 156.44230 * 5 4 3 9 9 C 1.38134 * 120.06579 * 359.97438 * 4 3 2 10 10 C 1.38845 * 119.93199 * 0.02562 * 9 4 3 11 11 N 1.39928 * 120.06966 * 179.97438 * 10 9 4 12 12 C 1.34769 * 120.00293 * 335.19164 * 11 10 9 13 13 O 1.21294 * 119.99858 * 354.36533 * 12 11 10 14 14 C 1.50696 * 120.00246 * 174.09575 * 12 11 10 15 15 N 1.46497 * 109.47327 * 180.27503 * 14 12 11 16 16 C 1.46505 * 119.99964 * 89.99551 * 15 14 12 17 17 C 1.36939 * 120.00168 * 269.99905 * 15 14 12 18 18 H 1.08002 * 119.99769 * 34.63601 * 17 15 14 19 19 C 1.38807 * 119.99984 * 214.63917 * 17 15 14 20 20 N 1.31617 * 120.00275 * 355.11152 * 19 17 15 21 21 Si 1.86805 * 120.00033 * 175.10434 * 19 17 15 22 22 H 1.48504 * 109.46809 * 60.00254 * 21 19 17 23 23 H 1.48501 * 109.47451 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47306 * 300.00612 * 21 19 17 25 25 C 1.38092 * 119.97140 * 180.25955 * 2 1 3 26 26 C 1.50707 * 120.03346 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47158 * 90.00253 * 1 2 3 28 28 H 1.09011 * 109.46505 * 209.99917 * 1 2 3 29 29 H 1.08996 * 109.47442 * 329.99218 * 1 2 3 30 30 H 1.08001 * 119.93433 * 0.02562 * 3 2 1 31 31 H 0.96996 * 120.00021 * 359.97438 * 6 5 4 32 32 H 0.96996 * 119.99570 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.03137 * 179.97438 * 9 4 3 34 34 H 0.97003 * 119.99512 * 155.19265 * 11 10 9 35 35 H 1.09000 * 109.47051 * 300.27060 * 14 12 11 36 36 H 1.08995 * 109.47167 * 60.27313 * 14 12 11 37 37 H 1.09004 * 109.46740 * 94.96793 * 16 15 14 38 38 H 1.09007 * 109.47018 * 214.96283 * 16 15 14 39 39 H 1.08997 * 109.47206 * 334.96779 * 16 15 14 40 40 H 0.96998 * 120.00350 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47101 * 270.26400 * 26 25 2 42 42 H 1.09000 * 109.46539 * 30.26229 * 26 25 2 43 43 H 1.08992 * 109.46988 * 150.25706 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2026 0.0005 5 16 4.4556 2.7318 -0.0002 6 7 4.7001 3.1560 -1.5822 7 8 3.5699 3.7013 0.5429 8 8 5.7391 2.4597 0.5453 9 6 4.2762 0.0093 0.0016 10 6 3.5857 -1.1953 0.0016 11 7 4.2877 -2.4058 0.0021 12 6 5.5424 -2.4574 -0.4871 13 8 6.0260 -1.4812 -1.0204 14 6 6.3468 -3.7260 -0.3660 15 7 7.6690 -3.5248 -0.9639 16 6 8.7776 -3.0334 -0.1418 17 6 7.8687 -3.7959 -2.2913 18 1 7.0789 -3.6124 -3.0047 19 6 9.0861 -4.3067 -2.7198 20 7 10.0804 -4.4402 -1.8677 21 14 9.3135 -4.8049 -4.5058 22 1 9.0912 -3.6257 -5.3807 23 1 10.6935 -5.3157 -4.7055 24 1 8.3365 -5.8686 -4.8512 25 6 2.1968 -1.1962 -0.0054 26 6 1.4434 -2.5014 -0.0119 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1325 0.0004 31 1 4.3737 2.5834 -2.2938 32 1 5.1705 3.9766 -1.7970 33 1 5.3562 0.0134 0.0016 34 1 3.8712 -3.2078 0.3546 35 1 6.4598 -3.9855 0.6866 36 1 5.8319 -4.5336 -0.8862 37 1 9.3593 -3.8786 0.2263 38 1 9.4168 -2.3866 -0.7429 39 1 8.3815 -2.4695 0.7027 40 1 10.9313 -4.7968 -2.1672 41 1 1.2573 -2.8186 1.0141 42 1 0.4932 -2.3698 -0.5296 43 1 2.0347 -3.2597 -0.5251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299643794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:13 Heat of formation + Delta-G solvation = -56.482013 kcal Electronic energy + Delta-G solvation = -27965.420924 eV Core-core repulsion = 23945.670192 eV Total energy + Delta-G solvation = -4019.750732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63104 -38.67118 -37.10717 -35.81115 -35.37684 -34.64734 -33.74791 -33.20619 -31.54607 -30.83958 -28.17680 -26.98301 -26.78254 -25.79896 -22.89893 -22.06617 -21.19382 -19.85336 -19.43086 -18.39792 -17.42362 -17.12542 -16.69266 -16.41444 -16.12322 -15.81687 -15.22413 -14.99117 -14.75950 -14.65762 -14.34404 -13.71223 -13.43151 -13.30881 -13.14853 -12.97702 -12.82858 -12.51933 -12.29601 -12.16957 -12.06999 -12.05785 -11.95432 -11.79286 -11.61233 -11.36364 -10.92228 -10.88001 -10.74025 -10.52699 -10.44358 -10.36095 -10.08963 -10.00113 -9.33857 -9.00221 -8.51855 -8.03657 -6.71682 -5.81100 -3.37191 0.35306 0.69942 1.19428 2.89383 3.13709 3.23616 3.36808 3.41125 3.42550 3.45233 3.71865 4.37174 4.44752 4.61993 4.67811 4.80640 5.02414 5.08378 5.21765 5.26662 5.33918 5.37145 5.41725 5.51065 5.54045 5.60377 5.72885 5.82918 5.92819 5.99366 6.04157 6.12969 6.19562 6.27670 6.38173 6.79226 6.94444 6.95909 7.41060 7.62211 7.74726 7.80084 8.37162 8.63014 9.17429 9.73730 10.27329 11.23676 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.003386 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.442939 B = 8266.974127 C = 9535.729489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.049 4.049 4 C -0.655 4.655 5 S 2.703 3.297 6 N -1.249 6.249 7 O -0.971 6.971 8 O -0.958 6.958 9 C -0.036 4.036 10 C 0.149 3.851 11 N -0.683 5.683 12 C 0.471 3.529 13 O -0.498 6.498 14 C 0.137 3.863 15 N -0.572 5.572 16 C 0.161 3.839 17 C -0.264 4.264 18 H 0.062 0.938 19 C 0.018 3.982 20 N -0.900 5.900 21 Si 0.907 3.093 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.281 1.281 25 C -0.072 4.072 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.418 0.582 32 H 0.419 0.581 33 H 0.167 0.833 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.043 0.957 39 H -0.004 1.004 40 H 0.256 0.744 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 7.562 4.264 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.070 4.070 4 C -0.743 4.743 5 S 2.792 3.208 6 N -0.923 5.923 7 O -0.960 6.960 8 O -0.947 6.947 9 C -0.058 4.058 10 C 0.051 3.949 11 N -0.330 5.330 12 C 0.257 3.743 13 O -0.369 6.369 14 C 0.004 3.996 15 N -0.291 5.291 16 C 0.016 3.984 17 C -0.394 4.394 18 H 0.080 0.920 19 C -0.182 4.182 20 N -0.543 5.543 21 Si 0.736 3.264 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.207 1.207 25 C -0.075 4.075 26 C -0.180 4.180 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.245 0.755 32 H 0.249 0.751 33 H 0.184 0.816 34 H 0.244 0.756 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.027 8.548 4.785 21.401 hybrid contribution -0.327 -1.036 -1.575 1.913 sum -19.354 7.513 3.211 21.008 Atomic orbital electron populations 1.20819 0.90462 1.03174 1.02591 1.19602 0.96168 0.91894 1.01437 1.20668 0.91687 0.98576 0.96026 1.30372 1.05707 1.18810 1.19455 1.01441 0.73810 0.73158 0.72351 1.52996 1.76111 1.36560 1.26671 1.93578 1.66852 1.58828 1.76738 1.93637 1.39931 1.84731 1.76422 1.21299 1.02262 0.89315 0.92899 1.17810 0.90321 0.87147 0.99594 1.44324 1.16554 1.09315 1.62807 1.24226 0.79916 0.94272 0.75887 1.90603 1.69150 1.37420 1.39744 1.20714 0.88567 0.91406 0.98932 1.43532 1.03280 1.74305 1.07971 1.20950 0.89302 0.96551 0.91548 1.19003 1.00108 1.37042 0.83223 0.91985 1.25317 0.96866 0.97945 0.98040 1.70017 1.02768 1.47837 1.33651 0.86325 0.76922 0.78718 0.84482 1.20828 1.21455 1.20731 1.19805 0.91799 0.95958 0.99937 1.20881 1.00465 0.93805 1.02818 0.90922 0.91086 0.91140 0.84351 0.75517 0.75144 0.81597 0.75621 0.90805 0.89865 0.94464 0.93777 0.98542 0.93407 0.90422 0.90465 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.18 36.00 0.33 -0.47 16 2 C -0.09 -0.94 5.88 -104.65 -0.62 -1.56 16 3 C -0.05 -0.57 9.17 -39.55 -0.36 -0.93 16 4 C -0.65 -8.86 5.94 -39.61 -0.24 -9.10 16 5 S 2.70 35.37 6.28 -107.50 -0.68 34.70 16 6 N -1.25 -11.90 9.55 60.35 0.58 -11.32 16 7 O -0.97 -14.08 17.28 -57.17 -0.99 -15.07 16 8 O -0.96 -16.64 17.28 -57.17 -0.99 -17.63 16 9 C -0.04 -0.58 8.19 -39.39 -0.32 -0.90 16 10 C 0.15 2.13 6.41 -83.69 -0.54 1.60 16 11 N -0.68 -9.51 4.97 -9.86 -0.05 -9.56 16 12 C 0.47 8.76 7.70 -10.99 -0.08 8.67 16 13 O -0.50 -11.38 13.60 5.55 0.08 -11.30 16 14 C 0.14 2.62 6.13 -5.20 -0.03 2.59 16 15 N -0.57 -14.41 2.40 -182.50 -0.44 -14.84 16 16 C 0.16 4.07 8.98 59.85 0.54 4.61 16 17 C -0.26 -7.30 9.55 -15.06 -0.14 -7.45 16 18 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 19 C 0.02 0.50 5.39 -17.43 -0.09 0.41 16 20 N -0.90 -25.98 10.67 55.49 0.59 -25.39 16 21 Si 0.91 21.69 29.56 -169.99 -5.02 16.67 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.07 -0.81 5.90 -104.43 -0.62 -1.42 16 26 C -0.12 -0.95 8.62 36.01 0.31 -0.64 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.41 6.72 -51.92 -0.35 0.06 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.14 1.33 7.61 -52.49 -0.40 0.93 16 31 H 0.42 3.31 8.92 -34.48 -0.31 3.00 16 32 H 0.42 3.14 8.96 -34.47 -0.31 2.83 16 33 H 0.17 3.17 5.35 -52.49 -0.28 2.89 16 34 H 0.41 4.09 7.42 -40.82 -0.30 3.79 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 37 H 0.04 0.98 7.24 -51.93 -0.38 0.60 16 38 H 0.04 1.23 7.64 -51.92 -0.40 0.83 16 39 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.49 6.72 -51.93 -0.35 0.14 16 43 H 0.07 0.55 6.99 -51.93 -0.36 0.19 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -38.30 368.16 -8.73 -47.03 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.50 Total: 5.76 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.86 Total: -4.59 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.68 Total: -61.11 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.90 Total: -44.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 35.37 SS G_CDS: -0.68 Total: 34.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.30 -8.73 -47.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299643794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.454 kcal (2) G-P(sol) polarization free energy of solvation -38.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds