Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38303 * 119.96135 * 2 1 4 4 C 1.38269 * 120.14320 * 179.97438 * 3 2 1 5 5 S 1.76194 * 119.96554 * 179.97438 * 4 3 2 6 6 N 1.65606 * 107.21977 * 269.98111 * 5 4 3 7 7 O 1.42100 * 106.40305 * 23.52196 * 5 4 3 8 8 O 1.42097 * 106.40150 * 156.44230 * 5 4 3 9 9 C 1.38134 * 120.06579 * 359.97438 * 4 3 2 10 10 C 1.38845 * 119.93199 * 0.02562 * 9 4 3 11 11 N 1.39928 * 120.06966 * 179.97438 * 10 9 4 12 12 C 1.34769 * 120.00293 * 335.19164 * 11 10 9 13 13 O 1.21294 * 119.99858 * 354.36533 * 12 11 10 14 14 C 1.50696 * 120.00246 * 174.09575 * 12 11 10 15 15 N 1.46497 * 109.47327 * 180.27503 * 14 12 11 16 16 C 1.46505 * 119.99964 * 89.99551 * 15 14 12 17 17 C 1.36939 * 120.00168 * 269.99905 * 15 14 12 18 18 H 1.08002 * 119.99769 * 34.63601 * 17 15 14 19 19 C 1.38807 * 119.99984 * 214.63917 * 17 15 14 20 20 N 1.31617 * 120.00275 * 355.11152 * 19 17 15 21 21 Si 1.86805 * 120.00033 * 175.10434 * 19 17 15 22 22 H 1.48504 * 109.46809 * 60.00254 * 21 19 17 23 23 H 1.48501 * 109.47451 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47306 * 300.00612 * 21 19 17 25 25 C 1.38092 * 119.97140 * 180.25955 * 2 1 3 26 26 C 1.50707 * 120.03346 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47158 * 90.00253 * 1 2 3 28 28 H 1.09011 * 109.46505 * 209.99917 * 1 2 3 29 29 H 1.08996 * 109.47442 * 329.99218 * 1 2 3 30 30 H 1.08001 * 119.93433 * 0.02562 * 3 2 1 31 31 H 0.96996 * 120.00021 * 359.97438 * 6 5 4 32 32 H 0.96996 * 119.99570 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.03137 * 179.97438 * 9 4 3 34 34 H 0.97003 * 119.99512 * 155.19265 * 11 10 9 35 35 H 1.09000 * 109.47051 * 300.27060 * 14 12 11 36 36 H 1.08995 * 109.47167 * 60.27313 * 14 12 11 37 37 H 1.09004 * 109.46740 * 94.96793 * 16 15 14 38 38 H 1.09007 * 109.47018 * 214.96283 * 16 15 14 39 39 H 1.08997 * 109.47206 * 334.96779 * 16 15 14 40 40 H 0.96998 * 120.00350 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47101 * 270.26400 * 26 25 2 42 42 H 1.09000 * 109.46539 * 30.26229 * 26 25 2 43 43 H 1.08992 * 109.46988 * 150.25706 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2026 0.0005 5 16 4.4556 2.7318 -0.0002 6 7 4.7001 3.1560 -1.5822 7 8 3.5699 3.7013 0.5429 8 8 5.7391 2.4597 0.5453 9 6 4.2762 0.0093 0.0016 10 6 3.5857 -1.1953 0.0016 11 7 4.2877 -2.4058 0.0021 12 6 5.5424 -2.4574 -0.4871 13 8 6.0260 -1.4812 -1.0204 14 6 6.3468 -3.7260 -0.3660 15 7 7.6690 -3.5248 -0.9639 16 6 8.7776 -3.0334 -0.1418 17 6 7.8687 -3.7959 -2.2913 18 1 7.0789 -3.6124 -3.0047 19 6 9.0861 -4.3067 -2.7198 20 7 10.0804 -4.4402 -1.8677 21 14 9.3135 -4.8049 -4.5058 22 1 9.0912 -3.6257 -5.3807 23 1 10.6935 -5.3157 -4.7055 24 1 8.3365 -5.8686 -4.8512 25 6 2.1968 -1.1962 -0.0054 26 6 1.4434 -2.5014 -0.0119 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1325 0.0004 31 1 4.3737 2.5834 -2.2938 32 1 5.1705 3.9766 -1.7970 33 1 5.3562 0.0134 0.0016 34 1 3.8712 -3.2078 0.3546 35 1 6.4598 -3.9855 0.6866 36 1 5.8319 -4.5336 -0.8862 37 1 9.3593 -3.8786 0.2263 38 1 9.4168 -2.3866 -0.7429 39 1 8.3815 -2.4695 0.7027 40 1 10.9313 -4.7968 -2.1672 41 1 1.2573 -2.8186 1.0141 42 1 0.4932 -2.3698 -0.5296 43 1 2.0347 -3.2597 -0.5251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299643794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -87.247432 kcal Electronic energy + Delta-G solvation = -27966.755012 eV Core-core repulsion = 23945.670192 eV Total energy + Delta-G solvation = -4021.084820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78053 -39.92726 -38.28467 -37.15061 -36.99687 -35.99502 -34.63898 -34.10236 -33.42043 -31.98690 -29.32926 -28.30631 -27.86276 -27.58917 -24.38150 -23.00918 -22.74266 -21.16875 -20.48400 -19.50961 -18.78048 -18.42248 -18.16725 -17.62107 -17.15323 -17.00587 -16.75163 -16.40163 -15.95602 -15.85116 -15.39934 -15.33281 -14.96960 -14.77419 -14.24367 -13.79402 -13.65914 -13.61715 -13.40862 -13.29640 -13.27247 -13.24720 -13.13886 -13.07586 -12.80789 -12.76507 -12.61384 -12.47488 -12.33498 -12.14333 -11.93426 -11.93062 -11.52111 -11.41643 -10.87561 -10.57210 -9.88630 -9.15015 -8.71742 -7.89634 -5.48656 -0.67339 -0.30842 0.16710 1.45029 1.47797 1.54498 1.64019 2.03650 2.09170 2.36379 2.49116 2.69706 3.25989 3.41701 3.65548 3.75774 3.80613 3.98974 4.01491 4.21694 4.26948 4.55964 4.58043 4.60065 4.67870 4.77898 4.79741 4.80841 4.88412 4.93705 5.11471 5.16055 5.17837 5.18843 5.28960 5.39216 5.46512 5.62927 5.64885 5.89540 6.24745 6.29889 6.49349 7.10196 7.25945 7.75343 8.24319 9.13846 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.003386 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.442939 B = 8266.974127 C = 9535.729489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.047 4.047 4 C -0.659 4.659 5 S 2.723 3.277 6 N -1.236 6.236 7 O -0.984 6.984 8 O -1.008 7.008 9 C -0.069 4.069 10 C 0.123 3.877 11 N -0.661 5.661 12 C 0.476 3.524 13 O -0.548 6.548 14 C 0.134 3.866 15 N -0.594 5.594 16 C 0.178 3.822 17 C -0.273 4.273 18 H 0.057 0.943 19 C -0.036 4.036 20 N -0.930 5.930 21 Si 0.971 3.029 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.266 1.266 25 C -0.059 4.059 26 C -0.125 4.125 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.427 0.573 32 H 0.429 0.571 33 H 0.128 0.872 34 H 0.428 0.572 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.023 0.977 38 H 0.005 0.995 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.118 6.768 3.937 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.067 4.067 4 C -0.748 4.748 5 S 2.813 3.187 6 N -0.915 5.915 7 O -0.974 6.974 8 O -0.997 6.997 9 C -0.091 4.091 10 C 0.027 3.973 11 N -0.309 5.309 12 C 0.262 3.738 13 O -0.424 6.424 14 C 0.003 3.997 15 N -0.315 5.315 16 C 0.033 3.967 17 C -0.403 4.403 18 H 0.075 0.925 19 C -0.232 4.232 20 N -0.574 5.574 21 Si 0.798 3.202 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.062 4.062 26 C -0.181 4.181 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.178 0.822 31 H 0.256 0.744 32 H 0.262 0.738 33 H 0.145 0.855 34 H 0.268 0.732 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.202 7.751 4.487 24.870 hybrid contribution 0.735 -0.697 -1.425 1.748 sum -22.467 7.053 3.061 23.746 Atomic orbital electron populations 1.20951 0.87236 1.04797 1.04039 1.20117 0.98351 0.90980 0.99416 1.21077 0.90793 1.00314 0.94517 1.30178 1.06647 1.17550 1.20475 1.00565 0.72702 0.72729 0.72692 1.52659 1.76124 1.37143 1.25581 1.93552 1.66810 1.59337 1.77661 1.93581 1.42595 1.85446 1.78116 1.21038 1.00791 0.91309 0.95912 1.17951 0.91690 0.86203 1.01487 1.43792 1.15077 1.10363 1.61707 1.23693 0.81222 0.93116 0.75722 1.90612 1.70647 1.38810 1.42329 1.20985 0.86021 0.92107 1.00569 1.43690 1.05308 1.74990 1.07481 1.20626 0.89306 0.95344 0.91416 1.19219 1.00078 1.36399 0.84562 0.92545 1.26066 0.96677 0.98367 1.02090 1.70171 1.02946 1.48923 1.35364 0.85325 0.76913 0.78380 0.79631 1.21098 1.21541 1.19103 1.20221 0.90418 0.98189 0.97383 1.21045 1.00886 0.91576 1.04619 0.89353 0.89169 0.89982 0.82173 0.74360 0.73829 0.85466 0.73225 0.87813 0.87732 0.95871 0.97630 0.96618 0.93848 0.88102 0.88227 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.18 71.23 0.65 -0.37 16 2 C -0.09 -1.53 5.88 -19.88 -0.12 -1.65 16 3 C -0.05 -0.98 9.17 22.29 0.20 -0.78 16 4 C -0.66 -17.83 5.94 22.25 0.13 -17.70 16 5 S 2.72 73.27 6.28 -56.49 -0.35 72.92 16 6 N -1.24 -23.69 9.55 37.02 0.35 -23.34 16 7 O -0.98 -28.26 17.28 -128.00 -2.21 -30.47 16 8 O -1.01 -37.37 17.28 -128.00 -2.21 -39.58 16 9 C -0.07 -2.27 8.19 22.39 0.18 -2.09 16 10 C 0.12 3.42 6.41 38.15 0.24 3.67 16 11 N -0.66 -17.65 4.97 -303.51 -1.51 -19.16 16 12 C 0.48 17.76 7.70 87.66 0.68 18.43 16 13 O -0.55 -26.15 13.60 -3.07 -0.04 -26.20 16 14 C 0.13 5.05 6.13 85.63 0.52 5.57 16 15 N -0.59 -30.49 2.40 -731.31 -1.75 -32.24 16 16 C 0.18 9.38 8.98 127.77 1.15 10.52 16 17 C -0.27 -15.32 9.55 84.03 0.80 -14.52 16 18 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 19 C -0.04 -2.01 5.39 84.86 0.46 -1.55 16 20 N -0.93 -55.19 10.67 21.65 0.23 -54.96 16 21 Si 0.97 45.13 29.56 68.60 2.03 47.15 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.06 -1.15 5.90 -19.74 -0.12 -1.27 16 26 C -0.13 -1.36 8.62 71.24 0.61 -0.74 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.52 6.72 -2.38 -0.02 0.51 16 29 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.16 2.61 7.61 -2.91 -0.02 2.59 16 31 H 0.43 6.70 8.92 -96.75 -0.86 5.84 16 32 H 0.43 6.39 8.96 -96.75 -0.87 5.53 16 33 H 0.13 5.27 5.35 -2.91 -0.02 5.25 16 34 H 0.43 7.52 7.42 -92.71 -0.69 6.83 16 35 H 0.10 3.25 8.07 -2.39 -0.02 3.23 16 36 H 0.10 3.46 8.04 -2.39 -0.02 3.44 16 37 H 0.02 1.26 7.24 -2.38 -0.02 1.25 16 38 H 0.00 0.29 7.64 -2.38 -0.02 0.27 16 39 H 0.02 0.73 8.03 -2.39 -0.02 0.71 16 40 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 0.70 6.72 -2.39 -0.02 0.69 16 43 H 0.07 0.82 6.99 -2.39 -0.02 0.81 16 Total: -1.00 -87.39 368.16 -1.39 -88.78 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -1.33 Total: 19.58 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.41 Total: -2.48 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -2.68 Total: -129.70 kcal Atomic # 8 Polarization: -91.79 SS G_CDS: -4.47 Total: -96.25 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 73.27 SS G_CDS: -0.35 Total: 72.92 kcal Total: -87.39 -1.39 -88.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299643794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.535 kcal (2) G-P(sol) polarization free energy of solvation -87.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds