Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38135 * 120.03334 * 2 1 4 4 C 1.38265 * 120.06901 * 180.27977 * 3 2 1 5 5 C 1.38307 * 120.15425 * 359.73897 * 4 3 2 6 6 S 1.76194 * 119.96409 * 180.02562 * 5 4 3 7 7 O 1.42099 * 106.40048 * 23.56294 * 6 5 4 8 8 O 1.42098 * 106.40260 * 156.48773 * 6 5 4 9 9 N 1.65605 * 107.21919 * 270.02748 * 6 5 4 10 10 C 1.46500 * 120.00324 * 89.99788 * 9 6 5 11 11 C 1.46507 * 119.99914 * 269.99968 * 9 6 5 12 12 C 1.38086 * 120.07202 * 0.03252 * 5 4 3 13 13 C 1.38891 * 120.04123 * 179.79061 * 2 1 3 14 14 N 1.39673 * 120.07090 * 0.02562 * 13 2 1 15 15 C 1.46506 * 119.99605 * 179.72057 * 14 13 2 16 16 C 1.50699 * 109.46928 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99980 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99682 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46948 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47378 * 120.00054 * 23 21 19 26 26 H 1.48501 * 109.47174 * 239.99969 * 23 21 19 27 27 H 1.09001 * 109.47171 * 270.20507 * 1 2 3 28 28 H 1.09000 * 109.47868 * 30.21045 * 1 2 3 29 29 H 1.09004 * 109.46913 * 150.21157 * 1 2 3 30 30 H 1.07999 * 119.96115 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.91955 * 179.72881 * 4 3 2 32 32 H 1.08997 * 109.46868 * 59.99856 * 10 9 6 33 33 H 1.08993 * 109.47016 * 180.02562 * 10 9 6 34 34 H 1.09004 * 109.46729 * 300.00373 * 10 9 6 35 35 H 1.09008 * 109.46703 * 89.99695 * 11 9 6 36 36 H 1.08999 * 109.47144 * 209.99801 * 11 9 6 37 37 H 1.09003 * 109.46898 * 330.00308 * 11 9 6 38 38 H 1.07994 * 120.03407 * 179.97438 * 12 5 4 39 39 H 0.96995 * 120.00288 * 359.97438 * 14 13 2 40 40 H 1.09000 * 109.47212 * 300.00026 * 15 14 13 41 41 H 1.09001 * 109.46577 * 60.00101 * 15 14 13 42 42 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 43 43 H 0.97001 * 120.00876 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0058 5 6 4.2765 0.0013 -0.0063 6 16 6.0384 0.0082 -0.0130 7 8 6.4368 1.2603 0.5280 8 8 6.4467 -1.2391 0.5316 9 7 6.5226 0.0079 -1.5967 10 6 6.7317 1.2765 -2.2991 11 6 6.7418 -1.2610 -2.2955 12 6 3.5916 -1.1977 -0.0015 13 6 2.2023 -1.2023 0.0044 14 7 1.5063 -2.4133 0.0083 15 6 2.2414 -3.6806 0.0067 16 6 1.2644 -4.8279 0.0123 17 8 0.0714 -4.6087 0.0166 18 7 1.7162 -6.0978 0.0124 19 6 0.8273 -7.1416 0.0169 20 1 -0.2349 -6.9463 0.0208 21 6 1.2932 -8.4506 0.0166 22 7 2.5856 -8.6882 0.0114 23 14 0.0821 -9.8729 0.0220 24 1 -1.3048 -9.3421 0.0268 25 1 0.2901 -10.7048 -1.1904 26 1 0.2983 -10.7025 1.2345 27 1 -0.3633 0.0037 1.0277 28 1 -0.3635 0.8880 -0.5171 29 1 -0.3633 -0.8919 -0.5106 30 1 1.6583 2.1311 0.0004 31 1 4.1191 2.1331 -0.0103 32 1 7.5035 1.8518 -1.7879 33 1 7.0453 1.0771 -3.3237 34 1 5.8013 1.8444 -2.3082 35 1 5.8132 -1.5800 -2.7692 36 1 7.5110 -1.1287 -3.0563 37 1 7.0639 -2.0184 -1.5808 38 1 4.1353 -2.1308 -0.0023 39 1 0.5364 -2.4152 0.0083 40 1 2.8648 -3.7380 -0.8856 41 1 2.8715 -3.7361 0.8944 42 1 2.6702 -6.2731 0.0086 43 1 2.9108 -9.6021 0.0115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359781082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = -77.175953 kcal Electronic energy + Delta-G solvation = -27407.099977 eV Core-core repulsion = 23386.451889 eV Total energy + Delta-G solvation = -4020.648088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83575 -38.35783 -37.36378 -36.36702 -35.91212 -35.25403 -34.02940 -32.98010 -31.43520 -29.88444 -28.33834 -27.55229 -26.70678 -24.90021 -24.56094 -22.13122 -21.68929 -19.58122 -19.17875 -18.33199 -18.07057 -17.50363 -16.62672 -16.26265 -15.78206 -15.41102 -15.14673 -14.95696 -14.74798 -14.52127 -14.41556 -14.10309 -13.93433 -13.72090 -13.51755 -13.37159 -12.91839 -12.63311 -12.55504 -12.45514 -12.30912 -12.15704 -12.10432 -11.97002 -11.82572 -11.73314 -11.67777 -11.35098 -11.19320 -10.76925 -10.44645 -10.36187 -10.20343 -9.69046 -9.34228 -9.09561 -8.69302 -8.15450 -7.34837 -6.56116 -3.98267 0.24930 0.83723 1.49402 2.78729 3.06758 3.19431 3.25529 3.49004 3.50063 3.67087 3.72061 4.07892 4.20148 4.53600 4.70443 4.77907 4.83529 5.02355 5.08779 5.11625 5.12280 5.26873 5.35018 5.45686 5.46910 5.54146 5.55245 5.58784 5.64146 5.67536 5.67853 5.81206 5.92214 6.01427 6.05721 6.18512 6.26973 6.36321 6.72374 7.33552 7.41876 7.86026 7.94677 8.39981 9.00111 9.33743 9.81552 10.60701 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.002805 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.210633 B = 9980.054144 C =11466.876511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.111 4.111 3 C -0.093 4.093 4 C -0.088 4.088 5 C -0.631 4.631 6 S 2.694 3.306 7 O -0.958 6.958 8 O -0.953 6.953 9 N -1.007 6.007 10 C 0.091 3.909 11 C 0.081 3.919 12 C -0.104 4.104 13 C 0.210 3.790 14 N -0.721 5.721 15 C 0.106 3.894 16 C 0.429 3.571 17 O -0.596 6.596 18 N -0.548 5.548 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.893 5.893 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 19.526 -5.326 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.110 4.110 5 C -0.719 4.719 6 S 2.786 3.214 7 O -0.948 6.948 8 O -0.944 6.944 9 N -0.846 5.846 10 C -0.055 4.055 11 C -0.064 4.064 12 C -0.128 4.128 13 C 0.103 3.897 14 N -0.353 5.353 15 C -0.022 4.022 16 C 0.214 3.786 17 O -0.483 6.483 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.533 5.533 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.254 0.746 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.254 19.237 -4.637 21.076 hybrid contribution -1.012 -0.966 -0.371 1.447 sum 6.243 18.271 -5.008 19.947 Atomic orbital electron populations 1.20749 0.90763 1.03053 1.02712 1.19695 0.96226 0.91751 1.03960 1.20847 0.93856 0.96933 0.99618 1.20514 0.94516 0.95921 1.00050 1.30534 1.25964 0.99041 1.16398 1.01905 0.73970 0.73441 0.72124 1.93557 1.81460 1.43826 1.75996 1.93585 1.81171 1.43986 1.75633 1.57314 1.83111 1.12273 1.31908 1.21547 1.01762 0.83923 0.98226 1.21699 1.02047 0.84212 0.98470 1.20342 0.92647 0.97028 1.02782 1.17709 0.91201 0.86089 0.94687 1.44616 1.09532 1.01225 1.79894 1.21046 0.94867 0.84012 1.02290 1.19652 0.89091 0.84059 0.85772 1.90500 1.16421 1.84071 1.57276 1.41806 1.09997 1.03958 1.62562 1.19771 0.91454 0.83990 1.48269 0.87662 1.25324 0.96695 0.98922 0.96714 1.69612 1.12460 1.22050 1.49217 0.85760 0.80236 0.80231 0.77875 1.19150 1.20570 1.20559 0.90808 0.91125 0.91229 0.85395 0.85019 0.91458 0.90117 0.92164 0.92384 0.90500 0.89587 0.84369 0.74618 0.90485 0.90228 0.77042 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.57 36.00 0.34 -0.91 16 2 C -0.11 -1.42 5.90 -104.42 -0.62 -2.03 16 3 C -0.09 -1.04 9.70 -39.61 -0.38 -1.43 16 4 C -0.09 -1.03 9.52 -39.55 -0.38 -1.40 16 5 C -0.63 -8.12 5.97 -39.61 -0.24 -8.36 16 6 S 2.69 33.42 5.70 -107.50 -0.61 32.80 16 7 O -0.96 -13.43 16.44 -57.17 -0.94 -14.37 16 8 O -0.95 -14.40 15.88 -57.17 -0.91 -15.30 16 9 N -1.01 -9.42 3.58 -129.20 -0.46 -9.88 16 10 C 0.09 0.62 10.30 59.85 0.62 1.24 16 11 C 0.08 0.65 10.63 59.85 0.64 1.29 16 12 C -0.10 -1.47 8.78 -39.38 -0.35 -1.82 16 13 C 0.21 3.09 6.63 -83.79 -0.56 2.54 16 14 N -0.72 -11.73 5.60 -59.80 -0.34 -12.07 16 15 C 0.11 1.84 5.39 -5.19 -0.03 1.81 16 16 C 0.43 9.66 7.85 -10.99 -0.09 9.57 16 17 O -0.60 -15.24 15.24 5.54 0.08 -15.16 16 18 N -0.55 -13.34 5.29 -10.96 -0.06 -13.39 16 19 C -0.31 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.49 13.05 55.50 0.72 -22.76 16 23 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.28 7.61 -52.49 -0.40 0.88 16 32 H 0.07 0.45 8.01 -51.93 -0.42 0.04 16 33 H 0.08 0.38 7.79 -51.93 -0.40 -0.03 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 37 H 0.09 0.76 7.02 -51.93 -0.36 0.40 16 38 H 0.14 1.90 6.29 -52.49 -0.33 1.57 16 39 H 0.41 7.02 5.43 -40.82 -0.22 6.80 16 40 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 41 H 0.08 1.29 7.95 -51.93 -0.41 0.87 16 42 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -33.47 373.54 -8.83 -42.30 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.66 Total: 14.16 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.27 Total: -7.27 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.13 Total: -58.11 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.76 Total: -44.83 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 33.42 SS G_CDS: -0.61 Total: 32.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.47 -8.83 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359781082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.876 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds