Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38135 * 120.03334 * 2 1 4 4 C 1.38265 * 120.06901 * 180.27977 * 3 2 1 5 5 C 1.38307 * 120.15425 * 359.73897 * 4 3 2 6 6 S 1.76194 * 119.96409 * 180.02562 * 5 4 3 7 7 O 1.42099 * 106.40048 * 23.56294 * 6 5 4 8 8 O 1.42098 * 106.40260 * 156.48773 * 6 5 4 9 9 N 1.65605 * 107.21919 * 270.02748 * 6 5 4 10 10 C 1.46500 * 120.00324 * 89.99788 * 9 6 5 11 11 C 1.46507 * 119.99914 * 269.99968 * 9 6 5 12 12 C 1.38086 * 120.07202 * 0.03252 * 5 4 3 13 13 C 1.38891 * 120.04123 * 179.79061 * 2 1 3 14 14 N 1.39673 * 120.07090 * 0.02562 * 13 2 1 15 15 C 1.46506 * 119.99605 * 179.72057 * 14 13 2 16 16 C 1.50699 * 109.46928 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99980 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99682 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46948 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47378 * 120.00054 * 23 21 19 26 26 H 1.48501 * 109.47174 * 239.99969 * 23 21 19 27 27 H 1.09001 * 109.47171 * 270.20507 * 1 2 3 28 28 H 1.09000 * 109.47868 * 30.21045 * 1 2 3 29 29 H 1.09004 * 109.46913 * 150.21157 * 1 2 3 30 30 H 1.07999 * 119.96115 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.91955 * 179.72881 * 4 3 2 32 32 H 1.08997 * 109.46868 * 59.99856 * 10 9 6 33 33 H 1.08993 * 109.47016 * 180.02562 * 10 9 6 34 34 H 1.09004 * 109.46729 * 300.00373 * 10 9 6 35 35 H 1.09008 * 109.46703 * 89.99695 * 11 9 6 36 36 H 1.08999 * 109.47144 * 209.99801 * 11 9 6 37 37 H 1.09003 * 109.46898 * 330.00308 * 11 9 6 38 38 H 1.07994 * 120.03407 * 179.97438 * 12 5 4 39 39 H 0.96995 * 120.00288 * 359.97438 * 14 13 2 40 40 H 1.09000 * 109.47212 * 300.00026 * 15 14 13 41 41 H 1.09001 * 109.46577 * 60.00101 * 15 14 13 42 42 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 43 43 H 0.97001 * 120.00876 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0058 5 6 4.2765 0.0013 -0.0063 6 16 6.0384 0.0082 -0.0130 7 8 6.4368 1.2603 0.5280 8 8 6.4467 -1.2391 0.5316 9 7 6.5226 0.0079 -1.5967 10 6 6.7317 1.2765 -2.2991 11 6 6.7418 -1.2610 -2.2955 12 6 3.5916 -1.1977 -0.0015 13 6 2.2023 -1.2023 0.0044 14 7 1.5063 -2.4133 0.0083 15 6 2.2414 -3.6806 0.0067 16 6 1.2644 -4.8279 0.0123 17 8 0.0714 -4.6087 0.0166 18 7 1.7162 -6.0978 0.0124 19 6 0.8273 -7.1416 0.0169 20 1 -0.2349 -6.9463 0.0208 21 6 1.2932 -8.4506 0.0166 22 7 2.5856 -8.6882 0.0114 23 14 0.0821 -9.8729 0.0220 24 1 -1.3048 -9.3421 0.0268 25 1 0.2901 -10.7048 -1.1904 26 1 0.2983 -10.7025 1.2345 27 1 -0.3633 0.0037 1.0277 28 1 -0.3635 0.8880 -0.5171 29 1 -0.3633 -0.8919 -0.5106 30 1 1.6583 2.1311 0.0004 31 1 4.1191 2.1331 -0.0103 32 1 7.5035 1.8518 -1.7879 33 1 7.0453 1.0771 -3.3237 34 1 5.8013 1.8444 -2.3082 35 1 5.8132 -1.5800 -2.7692 36 1 7.5110 -1.1287 -3.0563 37 1 7.0639 -2.0184 -1.5808 38 1 4.1353 -2.1308 -0.0023 39 1 0.5364 -2.4152 0.0083 40 1 2.8648 -3.7380 -0.8856 41 1 2.8715 -3.7361 0.8944 42 1 2.6702 -6.2731 0.0086 43 1 2.9108 -9.6021 0.0115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359781082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = -102.209967 kcal Electronic energy + Delta-G solvation = -27408.185533 eV Core-core repulsion = 23386.451889 eV Total energy + Delta-G solvation = -4021.733644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97408 -40.05590 -38.41152 -37.10292 -36.91673 -36.60089 -35.84966 -33.96558 -33.38017 -31.05409 -28.93169 -28.71523 -27.93503 -26.32262 -25.56856 -23.23810 -22.68756 -21.23018 -20.27415 -20.00575 -19.27807 -18.42505 -17.88935 -17.48851 -17.00335 -16.49962 -16.44879 -16.37155 -16.17328 -15.78352 -15.37782 -15.27982 -15.06112 -14.91550 -14.71123 -14.12446 -14.02454 -13.95878 -13.58738 -13.56793 -13.34197 -13.21823 -13.20917 -13.19611 -13.03819 -12.94106 -12.57731 -12.50145 -12.47631 -12.29171 -12.13257 -11.74153 -11.61205 -11.33196 -10.58296 -10.12265 -10.09279 -9.97504 -8.53406 -8.48508 -6.03629 -0.68158 -0.15319 0.50298 1.32978 1.41068 1.54732 1.87957 1.94236 2.14814 2.36175 2.53044 2.76343 3.10547 3.13601 3.27195 3.77594 3.90010 3.90605 4.10931 4.14126 4.32613 4.34072 4.39813 4.52200 4.57525 4.57925 4.63176 4.72546 4.74322 4.79000 4.98740 5.01057 5.02354 5.06400 5.13653 5.24600 5.35589 5.40214 5.58921 5.74583 5.88054 6.19620 6.46921 6.67846 7.01797 7.41720 7.92918 8.63576 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.002805 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.210633 B = 9980.054144 C =11466.876511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C -0.090 4.090 4 C -0.085 4.085 5 C -0.638 4.638 6 S 2.707 3.293 7 O -0.977 6.977 8 O -0.987 6.987 9 N -1.002 6.002 10 C 0.079 3.921 11 C 0.073 3.927 12 C -0.119 4.119 13 C 0.187 3.813 14 N -0.731 5.731 15 C 0.120 3.880 16 C 0.431 3.569 17 O -0.628 6.628 18 N -0.559 5.559 19 C -0.338 4.338 20 H 0.083 0.917 21 C -0.009 4.009 22 N -0.914 5.914 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.408 0.592 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.400 0.600 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 21.137 -6.263 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.109 4.109 4 C -0.106 4.106 5 C -0.726 4.726 6 S 2.799 3.201 7 O -0.967 6.967 8 O -0.977 6.977 9 N -0.843 5.843 10 C -0.066 4.066 11 C -0.072 4.072 12 C -0.143 4.143 13 C 0.082 3.918 14 N -0.364 5.364 15 C -0.008 4.008 16 C 0.218 3.782 17 O -0.516 6.516 18 N -0.194 5.194 19 C -0.467 4.467 20 H 0.101 0.899 21 C -0.209 4.209 22 N -0.554 5.554 23 Si 0.819 3.181 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.248 0.752 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.234 0.766 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.542 20.886 -5.572 22.894 hybrid contribution -1.054 -1.304 -0.121 1.681 sum 6.488 19.582 -5.693 21.400 Atomic orbital electron populations 1.20791 0.89564 1.03643 1.03165 1.20031 0.97292 0.91588 1.02950 1.21255 0.93803 0.97719 0.98090 1.20922 0.95067 0.96307 0.98311 1.30605 1.26149 0.99157 1.16712 1.01327 0.73695 0.72292 0.72811 1.93524 1.81741 1.44282 1.77128 1.93538 1.81740 1.45356 1.77109 1.57127 1.82537 1.13709 1.30965 1.21850 1.02516 0.82828 0.99374 1.21880 1.03274 0.83379 0.98641 1.20387 0.92650 0.97539 1.03747 1.17921 0.91490 0.86082 0.96294 1.44511 1.09124 1.01276 1.81471 1.20890 0.93543 0.82585 1.03781 1.20497 0.89507 0.84680 0.83491 1.90471 1.18334 1.84757 1.58071 1.41849 1.09868 1.04300 1.63415 1.19730 0.90997 0.85492 1.50512 0.89908 1.26094 0.98432 1.00674 0.95742 1.69670 1.13589 1.22942 1.49170 0.84838 0.77747 0.77140 0.78409 1.19653 1.19426 1.19623 0.90389 0.88436 0.92686 0.81840 0.82797 0.91431 0.87472 0.91133 0.91846 0.87704 0.90912 0.84843 0.75248 0.88471 0.89128 0.76602 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.57 71.24 0.68 -1.62 16 2 C -0.11 -2.70 5.90 -19.73 -0.12 -2.82 16 3 C -0.09 -1.74 9.70 22.25 0.22 -1.52 16 4 C -0.08 -1.76 9.52 22.29 0.21 -1.55 16 5 C -0.64 -15.70 5.97 22.25 0.13 -15.56 16 6 S 2.71 65.29 5.70 -56.49 -0.32 64.97 16 7 O -0.98 -26.35 16.44 -128.00 -2.10 -28.45 16 8 O -0.99 -30.18 15.88 -128.00 -2.03 -32.21 16 9 N -1.00 -17.19 3.58 -562.66 -2.02 -19.21 16 10 C 0.08 0.88 10.30 127.77 1.32 2.20 16 11 C 0.07 1.07 10.63 127.77 1.36 2.43 16 12 C -0.12 -3.33 8.78 22.40 0.20 -3.13 16 13 C 0.19 5.40 6.63 38.21 0.25 5.65 16 14 N -0.73 -23.97 5.60 -343.12 -1.92 -25.90 16 15 C 0.12 4.21 5.39 85.63 0.46 4.67 16 16 C 0.43 19.92 7.85 87.66 0.69 20.60 16 17 O -0.63 -33.12 15.24 -3.08 -0.05 -33.17 16 18 N -0.56 -27.92 5.29 -306.98 -1.62 -29.54 16 19 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 22 N -0.91 -48.13 13.05 21.66 0.28 -47.85 16 23 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.05 1.27 6.55 -2.38 -0.02 1.26 16 30 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.15 2.49 7.61 -2.91 -0.02 2.47 16 32 H 0.07 0.77 8.01 -2.39 -0.02 0.75 16 33 H 0.11 0.65 7.79 -2.39 -0.02 0.63 16 34 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.10 0.94 7.92 -2.39 -0.02 0.92 16 37 H 0.07 1.27 7.02 -2.39 -0.02 1.25 16 38 H 0.13 3.73 6.29 -2.91 -0.02 3.72 16 39 H 0.41 14.16 5.43 -92.71 -0.50 13.66 16 40 H 0.10 2.99 7.95 -2.39 -0.02 2.97 16 41 H 0.09 2.96 7.95 -2.39 -0.02 2.94 16 42 H 0.40 18.99 7.90 -92.71 -0.73 18.25 16 43 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -72.97 373.54 -1.25 -74.23 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.17 Total: 41.84 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 6.68 Total: -8.46 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.28 Total: -122.49 kcal Atomic # 8 Polarization: -89.65 SS G_CDS: -4.18 Total: -93.83 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 65.29 SS G_CDS: -0.32 Total: 64.97 kcal Total: -72.97 -1.25 -74.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359781082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.984 kcal (2) G-P(sol) polarization free energy of solvation -72.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds