Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38272 * 119.96177 * 2 1 4 4 C 1.38243 * 120.11867 * 179.97438 * 3 2 1 5 5 C 1.38248 * 120.04548 * 0.02562 * 4 3 2 6 6 Cl 1.73602 * 120.04304 * 179.97438 * 5 4 3 7 7 C 1.38812 * 119.92277 * 359.97438 * 5 4 3 8 8 O 1.35928 * 120.06112 * 180.02562 * 7 5 4 9 9 C 1.42907 * 116.99838 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.46847 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47296 * 54.99702 * 10 9 8 12 12 O 1.42902 * 109.47127 * 294.99619 * 10 9 8 13 13 C 1.53005 * 109.47188 * 175.00067 * 10 9 8 14 14 N 1.46901 * 109.47056 * 185.00144 * 13 10 9 15 15 C 1.47962 * 110.99645 * 169.99960 * 14 13 10 16 16 C 1.53939 * 86.17954 * 222.41370 * 15 14 13 17 17 O 1.42901 * 113.73443 * 269.25769 * 16 15 14 18 18 C 1.50699 * 113.73181 * 138.07765 * 16 15 14 19 19 H 1.07999 * 120.00015 * 4.91121 * 18 16 15 20 20 C 1.37879 * 119.99686 * 184.90847 * 18 16 15 21 21 N 1.31521 * 119.99972 * 13.82310 * 20 18 16 22 22 Si 1.86792 * 119.99875 * 193.81760 * 20 18 16 23 23 H 1.48504 * 109.47216 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47601 * 300.00327 * 22 20 18 25 25 H 1.48506 * 109.47155 * 60.00602 * 22 20 18 26 26 C 1.47957 * 111.00157 * 70.63963 * 14 13 10 27 27 C 1.38152 * 119.96032 * 180.26634 * 2 1 3 28 28 H 1.08996 * 109.47545 * 89.99279 * 1 2 3 29 29 H 1.09005 * 109.47511 * 209.99495 * 1 2 3 30 30 H 1.09004 * 109.47041 * 329.99467 * 1 2 3 31 31 H 1.08002 * 119.94091 * 359.96470 * 3 2 1 32 32 H 1.08014 * 119.97896 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47096 * 60.00129 * 9 8 7 34 34 H 1.08997 * 109.46807 * 299.99580 * 9 8 7 35 35 H 0.96698 * 114.00268 * 299.99980 * 12 10 9 36 36 H 1.08996 * 109.47057 * 64.99566 * 13 10 9 37 37 H 1.08995 * 109.46388 * 304.99807 * 13 10 9 38 38 H 1.08999 * 113.76019 * 108.09949 * 15 14 13 39 39 H 1.09000 * 113.85879 * 336.74722 * 15 14 13 40 40 H 0.96693 * 113.99776 * 171.47023 * 17 16 15 41 41 H 0.97001 * 119.99982 * 5.87544 * 21 20 18 42 42 H 1.08994 * 113.76072 * 23.25977 * 26 14 13 43 43 H 1.09001 * 113.75391 * 251.89917 * 26 14 13 44 44 H 1.08001 * 120.02152 * 0.03492 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1979 0.0000 4 6 3.5800 1.2017 0.0005 5 6 4.2754 0.0069 0.0005 6 17 6.0114 0.0117 0.0005 7 6 3.5840 -1.1968 0.0005 8 8 4.2649 -2.3732 0.0011 9 6 3.4879 -3.5725 0.0005 10 6 4.4213 -4.7848 0.0018 11 1 5.1091 -4.7129 0.8443 12 8 5.1644 -4.8152 -1.2184 13 6 3.5937 -6.0656 0.1269 14 7 4.4936 -7.2202 0.2487 15 6 3.7420 -8.4426 0.6093 16 6 4.8960 -8.7406 1.5836 17 8 5.9429 -9.5272 1.0117 18 6 4.4400 -9.2553 2.9246 19 1 3.3934 -9.4577 3.0978 20 6 5.3590 -9.4679 3.9302 21 7 6.5741 -8.9757 3.8253 22 14 4.8782 -10.4546 5.4416 23 1 6.0362 -10.5378 6.3675 24 1 3.7430 -9.7872 6.1281 25 1 4.4729 -11.8230 5.0310 26 6 5.1733 -7.2265 1.5629 27 6 2.1969 -1.1969 -0.0056 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6559 2.1323 -0.0006 32 1 4.1171 2.1388 0.0001 33 1 2.8598 -3.5981 -0.8900 34 1 2.8585 -3.5981 0.8900 35 1 4.6153 -4.8788 -2.0118 36 1 2.9697 -6.1830 -0.7591 37 1 2.9602 -6.0038 1.0117 38 1 3.6576 -9.1625 -0.2047 39 1 2.7903 -8.2455 1.1029 40 1 6.7260 -9.6077 1.5733 41 1 6.7990 -8.3928 3.0833 42 1 4.6408 -6.6718 2.3353 43 1 6.2326 -6.9748 1.5105 44 1 1.6566 -2.1320 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429637330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = -111.937531 kcal Electronic energy + Delta-G solvation = -27133.977699 eV Core-core repulsion = 23077.485778 eV Total energy + Delta-G solvation = -4056.491921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48166 -41.06054 -39.20376 -37.88459 -37.45007 -36.34852 -34.30183 -33.49148 -32.42502 -31.14262 -29.44865 -27.84677 -27.28437 -26.86680 -24.74994 -23.19174 -22.83531 -22.19961 -20.75775 -19.90680 -18.99186 -18.07660 -17.74304 -17.22587 -17.16557 -16.84706 -16.65621 -16.13355 -15.90750 -15.59040 -15.54142 -15.15079 -14.70660 -14.64272 -14.45490 -14.29141 -14.02527 -13.77798 -13.70454 -13.32102 -13.14419 -12.97450 -12.75326 -12.58750 -12.51690 -12.39861 -12.39250 -12.14026 -11.95260 -11.91156 -11.82702 -11.74977 -11.07775 -11.06830 -10.72170 -10.23460 -9.83524 -9.61910 -9.19294 -8.68292 -6.48730 0.06861 0.27531 1.19046 1.54302 1.59645 1.80817 1.89925 2.52264 2.54232 2.88215 2.98529 3.38250 3.47294 3.67828 3.72650 3.75162 3.86077 3.89846 4.01601 4.04919 4.19736 4.21603 4.24739 4.27107 4.38465 4.44092 4.52393 4.62358 4.71819 4.73899 4.82889 4.84691 4.86757 5.02593 5.14269 5.15609 5.21460 5.30832 5.49320 5.68292 5.79014 6.05618 6.11199 6.22922 6.43881 6.81027 6.98542 7.29552 8.62720 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.002343 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.549295 B =11946.072939 C =12170.317498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.148 4.148 4 C -0.071 4.071 5 C -0.102 4.102 6 Cl -0.076 7.076 7 C 0.123 3.877 8 O -0.316 6.316 9 C 0.035 3.965 10 C 0.125 3.875 11 H 0.074 0.926 12 O -0.559 6.559 13 C -0.006 4.006 14 N -0.469 5.469 15 C 0.029 3.971 16 C 0.194 3.806 17 O -0.576 6.576 18 C -0.636 4.636 19 H 0.057 0.943 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 1.111 2.889 23 H -0.285 1.285 24 H -0.269 1.269 25 H -0.274 1.274 26 C -0.010 4.010 27 C -0.208 4.208 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.385 0.615 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.367 0.633 41 H 0.262 0.738 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 21.450 -8.424 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.166 4.166 4 C -0.090 4.090 5 C -0.129 4.129 6 Cl -0.048 7.048 7 C 0.076 3.924 8 O -0.230 6.230 9 C -0.040 4.040 10 C 0.065 3.935 11 H 0.092 0.908 12 O -0.366 6.366 13 C -0.135 4.135 14 N -0.191 5.191 15 C -0.099 4.099 16 C 0.154 3.846 17 O -0.382 6.382 18 C -0.674 4.674 19 H 0.076 0.924 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.933 3.067 23 H -0.210 1.210 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.139 4.139 27 C -0.227 4.227 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.234 0.766 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.215 0.785 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.366 20.808 -7.753 25.918 hybrid contribution -0.531 0.528 -0.515 0.909 sum -13.897 21.336 -8.268 26.772 Atomic orbital electron populations 1.20919 0.88296 1.04275 1.03776 1.20219 0.98018 0.91886 0.94158 1.21287 0.92702 0.99221 1.03365 1.21196 0.94942 0.95934 0.96911 1.20527 0.84835 0.93415 1.14145 1.98366 1.10209 1.98916 1.97275 1.19014 0.91347 0.85188 0.96804 1.86213 1.36116 1.12470 1.88168 1.23635 0.94229 0.82141 1.04029 1.21638 0.92967 0.90576 0.88312 0.90800 1.86662 1.37779 1.96445 1.15695 1.23283 0.95458 0.91428 1.03326 1.68504 1.19528 1.02096 1.29020 1.23963 0.95895 0.92627 0.97456 1.20396 0.86037 0.86622 0.91539 1.86212 1.29185 1.74251 1.48539 1.22629 0.96658 1.50138 0.97944 0.92423 1.27219 0.93053 0.96509 1.04300 1.70981 1.21479 1.30175 1.33147 0.83019 0.75832 0.75605 0.72290 1.21023 1.19362 1.19966 1.24543 0.98367 1.00880 0.90148 1.21356 0.91108 1.00890 1.09361 0.89455 0.90763 0.89547 0.82033 0.82665 0.88634 0.89701 0.76581 0.87535 0.92514 0.90142 0.89789 0.78523 0.92665 0.92186 0.93246 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 71.23 0.71 -0.16 16 2 C -0.04 -0.59 5.88 -19.88 -0.12 -0.70 16 3 C -0.15 -1.92 9.70 22.28 0.22 -1.71 16 4 C -0.07 -1.20 9.83 22.27 0.22 -0.98 16 5 C -0.10 -2.37 6.33 22.41 0.14 -2.23 16 6 Cl -0.08 -1.98 28.50 -2.72 -0.08 -2.06 16 7 C 0.12 2.91 6.68 22.52 0.15 3.06 16 8 O -0.32 -8.63 9.56 -88.10 -0.84 -9.47 16 9 C 0.04 0.76 4.37 71.98 0.31 1.07 16 10 C 0.13 3.56 3.30 30.60 0.10 3.66 16 11 H 0.07 2.62 7.41 -2.39 -0.02 2.60 16 12 O -0.56 -17.16 13.25 -144.34 -1.91 -19.07 16 13 C -0.01 -0.17 4.46 86.30 0.38 0.21 16 14 N -0.47 -18.41 6.21 -910.86 -5.66 -24.07 16 15 C 0.03 1.19 7.36 86.41 0.64 1.83 16 16 C 0.19 9.74 1.08 -10.89 -0.01 9.72 16 17 O -0.58 -30.93 13.45 -148.98 -2.00 -32.93 16 18 C -0.64 -34.07 8.56 25.60 0.22 -33.86 16 19 H 0.06 3.02 7.85 -2.91 -0.02 2.99 16 20 C -0.01 -0.54 5.26 84.65 0.45 -0.10 16 21 N -0.92 -52.56 12.80 21.45 0.27 -52.29 16 22 Si 1.11 47.62 29.93 68.60 2.05 49.68 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C -0.01 -0.45 5.47 86.41 0.47 0.03 16 27 C -0.21 -3.68 8.69 22.36 0.19 -3.48 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.53 8.09 -2.38 -0.02 0.51 16 30 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 31 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.16 1.94 8.06 -2.90 -0.02 1.92 16 33 H 0.10 1.48 7.65 -2.39 -0.02 1.47 16 34 H 0.08 1.59 7.67 -2.39 -0.02 1.57 16 35 H 0.39 8.23 9.05 -74.06 -0.67 7.56 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 1.55 7.69 -2.39 -0.02 1.53 16 38 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.08 3.14 7.75 -2.39 -0.02 3.12 16 40 H 0.37 19.87 6.95 -74.06 -0.52 19.35 16 41 H 0.26 15.05 5.52 -92.71 -0.51 14.54 16 42 H 0.06 2.75 7.73 -2.39 -0.02 2.73 16 43 H 0.05 2.46 7.79 -2.39 -0.02 2.44 16 44 H 0.15 2.07 6.30 -2.91 -0.02 2.05 16 Total: -1.00 -69.99 378.08 -3.98 -73.97 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: 0.11 Total: 39.87 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 4.08 Total: -23.63 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -5.38 Total: -76.35 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -4.76 Total: -61.47 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.05 Total: 49.68 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -69.99 -3.98 -73.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429637330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.968 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds