Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99834 * 2 1 4 4 C 1.53000 * 109.47092 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46921 * 64.99528 * 4 3 2 6 6 C 1.46503 * 120.00112 * 269.99632 * 5 4 3 7 7 C 1.50698 * 109.47502 * 270.00682 * 6 5 4 8 8 H 1.08003 * 120.00098 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00089 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00113 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99976 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47245 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47016 * 119.99961 * 11 9 7 14 14 H 1.48500 * 109.47065 * 239.99809 * 11 9 7 15 15 C 1.34770 * 120.00144 * 90.00560 * 5 4 3 16 16 O 1.21289 * 119.99988 * 359.97438 * 15 5 4 17 17 C 1.50697 * 120.00535 * 179.97438 * 15 5 4 18 18 O 1.42893 * 109.47463 * 180.02562 * 17 15 5 19 19 C 1.35930 * 116.99957 * 180.02562 * 18 17 15 20 20 C 1.38709 * 120.06026 * 0.02562 * 19 18 17 21 21 C 1.38151 * 119.95812 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.96265 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.07593 * 0.02562 * 21 20 19 24 24 C 1.38251 * 120.11906 * 359.95579 * 23 21 20 25 25 C 1.38252 * 120.04239 * 0.04611 * 24 23 21 26 26 Cl 1.73603 * 120.03781 * 180.25769 * 25 24 23 27 27 H 1.09005 * 109.47237 * 299.99872 * 1 2 3 28 28 H 1.08995 * 109.47370 * 60.00209 * 1 2 3 29 29 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47324 * 59.99996 * 3 2 1 31 31 H 1.09007 * 109.46517 * 299.99749 * 3 2 1 32 32 H 1.09001 * 109.46632 * 304.99953 * 4 3 2 33 33 H 1.09001 * 109.47067 * 184.99685 * 4 3 2 34 34 H 1.09004 * 109.46686 * 30.00450 * 6 5 4 35 35 H 1.09001 * 109.47218 * 150.00303 * 6 5 4 36 36 H 0.96998 * 119.99882 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.47077 * 59.99701 * 17 15 5 38 38 H 1.09008 * 109.47100 * 299.99843 * 17 15 5 39 39 H 1.07995 * 120.01626 * 359.95792 * 20 19 18 40 40 H 1.09000 * 109.46711 * 90.00190 * 22 21 20 41 41 H 1.08996 * 109.46942 * 210.00316 * 22 21 20 42 42 H 1.09002 * 109.46795 * 330.00015 * 22 21 20 43 43 H 1.08000 * 119.94149 * 179.97438 * 23 21 20 44 44 H 1.08000 * 119.97834 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.5010 -1.2978 -0.9447 8 1 6.2198 -0.5459 -0.6543 9 6 5.8606 -2.6288 -0.9524 10 7 4.9855 -3.5444 -1.3066 11 14 7.5910 -3.1316 -0.4599 12 1 8.3767 -1.9218 -0.1078 13 1 7.5274 -4.0399 0.7132 14 1 8.2444 -3.8329 -1.5941 15 6 4.2615 1.3336 -2.3218 16 8 4.1539 2.5394 -2.2475 17 6 4.7148 0.6956 -3.6096 18 8 4.9547 1.7112 -4.5858 19 6 5.3723 1.3015 -5.8127 20 6 5.5471 -0.0499 -6.0717 21 6 5.9711 -0.4640 -7.3197 22 6 6.1615 -1.9322 -7.6010 23 6 6.2220 0.4673 -8.3106 24 6 6.0485 1.8150 -8.0560 25 6 5.6244 2.2348 -6.8089 26 17 5.4001 3.9268 -6.4914 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 3.3853 -1.3629 -0.6732 35 1 3.9120 -1.2116 -2.3667 36 1 5.2386 -4.4808 -1.3123 37 1 3.9412 0.0185 -3.9717 38 1 5.6340 0.1365 -3.4342 39 1 5.3520 -0.7779 -5.2982 40 1 5.2299 -2.3535 -7.9786 41 1 6.9467 -2.0605 -8.3460 42 1 6.4457 -2.4443 -6.6817 43 1 6.5538 0.1412 -9.2852 44 1 6.2447 2.5404 -8.8317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -102.539523 kcal Electronic energy + Delta-G solvation = -27747.086616 eV Core-core repulsion = 23691.002223 eV Total energy + Delta-G solvation = -4056.084392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26873 -39.15327 -37.65057 -37.09409 -36.28007 -34.96560 -32.70424 -32.45150 -30.61084 -29.96045 -27.98565 -27.09758 -26.61258 -25.77208 -23.06358 -22.93058 -21.90345 -21.51556 -18.62184 -17.89588 -16.84298 -16.55201 -16.40205 -16.04696 -15.90424 -15.74567 -15.43621 -14.99689 -14.58190 -14.43540 -14.16648 -14.01955 -13.60762 -13.48671 -13.26756 -12.69645 -12.60233 -12.37492 -12.30147 -12.01566 -11.80334 -11.60356 -11.54488 -11.50528 -11.15542 -11.14186 -10.97003 -10.93719 -10.69939 -10.64283 -10.59106 -10.20199 -9.77652 -9.42894 -9.10596 -8.74787 -8.58990 -8.04771 -7.80697 -6.22159 -4.30264 1.14434 1.36458 2.33222 2.96756 3.18327 3.21571 3.27904 3.33055 3.61011 4.04953 4.13924 4.31434 4.73040 4.76101 5.06164 5.10139 5.15835 5.19002 5.35896 5.43084 5.47765 5.48737 5.52518 5.59056 5.61832 5.63817 5.65681 5.73095 5.76967 5.83569 5.97254 6.03533 6.14029 6.16254 6.32160 6.51267 6.68110 6.72159 7.16213 7.39724 7.44200 7.53185 7.73803 8.01176 8.22839 8.72454 8.89441 9.37875 10.84156 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008143 B = 0.004164 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.501749 B = 6723.450094 C = 8853.802819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.583 5.583 6 C 0.236 3.764 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.520 3.480 16 O -0.554 6.554 17 C 0.045 3.955 18 O -0.282 6.282 19 C 0.152 3.848 20 C -0.200 4.200 21 C -0.039 4.039 22 C -0.119 4.119 23 C -0.156 4.156 24 C -0.072 4.072 25 C -0.078 4.078 26 Cl -0.060 7.060 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.031 0.969 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 5.115 -9.457 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.315 5.315 6 C 0.116 3.884 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.307 3.693 16 O -0.434 6.434 17 C -0.033 4.033 18 O -0.193 6.193 19 C 0.104 3.896 20 C -0.218 4.218 21 C -0.039 4.039 22 C -0.175 4.175 23 C -0.174 4.174 24 C -0.091 4.091 25 C -0.106 4.106 26 Cl -0.032 7.032 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.162 0.838 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.147 0.853 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.562 5.700 -9.305 11.209 hybrid contribution 0.667 -0.425 0.392 0.883 sum -1.894 5.275 -8.913 10.529 Atomic orbital electron populations 1.22684 0.82109 1.02407 0.99216 1.88049 1.18716 1.27430 1.95223 1.23031 0.95185 0.84956 0.99922 1.21355 0.91119 0.99723 0.87683 1.48039 1.63724 1.09936 1.09769 1.19554 0.97665 0.72567 0.98579 1.21574 0.97227 0.92550 1.46841 0.92012 1.24919 0.97518 0.96314 0.94842 1.69943 1.34241 1.01200 1.47159 0.86511 0.84265 0.78752 0.78415 1.19633 1.20769 1.20813 1.19755 0.77930 0.86799 0.84853 1.90650 1.54363 1.14255 1.84114 1.22662 1.03685 0.89784 0.87187 1.86189 1.80286 1.34738 1.18105 1.18754 0.93842 0.91774 0.85192 1.21320 1.07207 0.94097 0.99214 1.19814 0.95165 0.96427 0.92537 1.20860 1.02351 0.91308 1.03004 1.20839 1.05113 0.91845 0.99631 1.20818 0.97661 0.96437 0.94165 1.20146 1.10896 0.85056 0.94473 1.98361 1.95837 1.13025 1.95943 0.94687 0.94627 0.89847 0.93057 0.93307 0.89164 0.89290 0.92722 0.95063 0.92556 0.89142 0.87497 0.83806 0.90665 0.91304 0.90743 0.85282 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.56 9.53 -35.23 -0.34 -6.89 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.12 2.26 5.81 -4.04 -0.02 2.24 16 5 N -0.58 -12.10 2.42 -175.06 -0.42 -12.52 16 6 C 0.24 5.45 4.78 -5.19 -0.02 5.42 16 7 C -0.54 -13.66 9.28 -34.44 -0.32 -13.98 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -23.66 13.29 55.43 0.74 -22.92 16 11 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.52 10.99 7.75 -10.99 -0.09 10.90 16 16 O -0.55 -12.83 16.08 -14.36 -0.23 -13.07 16 17 C 0.04 0.84 3.77 36.00 0.14 0.98 16 18 O -0.28 -5.38 9.13 -39.43 -0.36 -5.74 16 19 C 0.15 2.53 6.68 -39.19 -0.26 2.26 16 20 C -0.20 -2.98 8.69 -39.44 -0.34 -3.32 16 21 C -0.04 -0.49 5.88 -104.64 -0.62 -1.11 16 22 C -0.12 -1.21 10.01 36.00 0.36 -0.85 16 23 C -0.16 -1.75 9.70 -39.56 -0.38 -2.14 16 24 C -0.07 -0.87 9.83 -39.57 -0.39 -1.26 16 25 C -0.08 -1.18 6.33 -39.36 -0.25 -1.43 16 26 Cl -0.06 -0.92 28.50 -51.86 -1.48 -2.40 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.63 8.07 -51.93 -0.42 1.22 16 33 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 34 H 0.05 1.37 7.11 -51.93 -0.37 1.00 16 35 H 0.03 0.73 6.44 -51.93 -0.33 0.40 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.09 1.58 6.92 -51.93 -0.36 1.22 16 38 H 0.11 2.04 7.53 -51.92 -0.39 1.65 16 39 H 0.14 2.16 6.30 -52.49 -0.33 1.83 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -30.12 388.12 -8.57 -38.69 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.36 Total: 2.11 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.95 Total: 1.89 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.31 Total: -35.45 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.93 Total: -25.70 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.48 Total: -2.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.12 -8.57 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.847 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds