Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99965 * 2 1 4 4 H 1.48505 * 109.47325 * 240.00081 * 3 2 1 5 5 H 1.48499 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47364 * 120.00292 * 3 2 1 7 7 C 1.37870 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46645 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46839 * 180.02562 * 11 10 9 13 13 C 1.50691 * 109.47007 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00407 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00059 * 179.97438 * 13 12 11 16 16 S 1.65601 * 119.99983 * 179.97438 * 15 13 12 17 17 O 1.42100 * 106.40256 * 311.45894 * 16 15 13 18 18 O 1.42101 * 106.40035 * 178.53958 * 16 15 13 19 19 C 1.76196 * 107.21671 * 65.00513 * 16 15 13 20 20 C 1.34565 * 126.58298 * 329.95174 * 19 16 15 21 21 N 1.34003 * 108.03195 * 180.02562 * 20 19 16 22 22 C 1.30903 * 109.30286 * 359.89407 * 21 20 19 23 23 N 1.34810 * 108.60907 * 0.20718 * 22 21 20 24 24 C 1.47013 * 111.18090 * 179.69358 * 23 22 21 25 25 C 1.54395 * 105.52437 * 17.13914 * 24 23 22 26 26 C 1.51566 * 141.44527 * 180.21007 * 22 21 20 27 27 H 0.97005 * 120.00368 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46468 * 60.00273 * 9 7 2 29 29 H 1.08997 * 109.47190 * 300.00042 * 9 7 2 30 30 H 1.09005 * 109.46712 * 60.00687 * 10 9 7 31 31 H 1.08997 * 109.47369 * 300.00172 * 10 9 7 32 32 H 1.08990 * 109.47240 * 60.00441 * 11 10 9 33 33 H 1.09000 * 109.46829 * 300.00089 * 11 10 9 34 34 H 1.09004 * 109.47189 * 59.99826 * 12 11 10 35 35 H 1.09007 * 109.46865 * 300.00082 * 12 11 10 36 36 H 0.96999 * 119.99966 * 0.02562 * 15 13 12 37 37 H 1.08005 * 125.97906 * 0.02699 * 20 19 16 38 38 H 1.08995 * 110.23657 * 136.14458 * 24 23 22 39 39 H 1.09002 * 110.23505 * 258.02703 * 24 23 22 40 40 H 1.09001 * 110.95932 * 216.15316 * 25 24 23 41 41 H 1.08995 * 110.97396 * 92.38882 * 25 24 23 42 42 H 1.09004 * 110.47429 * 282.15613 * 26 22 21 43 43 H 1.08998 * 110.48088 * 44.77350 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 2.4743 -6.1501 -0.0031 13 6 1.7208 -7.4551 -0.0044 14 8 0.5081 -7.4551 -0.0043 15 7 2.3947 -8.6223 -0.0056 16 16 1.5666 -10.0564 -0.0064 17 8 0.5849 -9.9535 1.0157 18 8 2.5461 -11.0853 -0.0424 19 6 0.6893 -10.1513 -1.5314 20 6 0.2107 -9.1170 -2.2470 21 7 -0.3911 -9.6105 -3.3379 22 6 -0.3020 -10.9164 -3.3278 23 7 0.3617 -11.2938 -2.2167 24 6 0.4881 -12.7567 -2.1445 25 6 0.1995 -13.2673 -3.5727 26 6 -0.6904 -12.1372 -4.1377 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6039 -0.8922 32 1 0.8531 -5.0442 -0.8922 33 1 0.8538 -5.0454 0.8877 34 1 3.1011 -6.0928 0.8869 35 1 3.1010 -6.0918 -0.8932 36 1 3.3647 -8.6224 -0.0054 37 1 0.2966 -8.0721 -1.9875 38 1 1.4981 -13.0334 -1.8422 39 1 -0.2398 -13.1638 -1.4427 40 1 -0.3411 -14.2135 -3.5467 41 1 1.1211 -13.3620 -4.1469 42 1 -1.7446 -12.3726 -3.9911 43 1 -0.4780 -11.9770 -5.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805923906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -54.928710 kcal Electronic energy + Delta-G solvation = -27105.736575 eV Core-core repulsion = 23086.053200 eV Total energy + Delta-G solvation = -4019.683375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.94535 -40.43256 -37.64308 -36.96498 -36.37052 -35.08396 -34.83947 -32.66422 -32.47116 -29.90717 -29.36111 -27.91568 -25.95332 -23.14326 -22.83546 -22.51778 -21.17734 -20.90159 -20.12055 -19.82383 -18.44166 -17.98399 -17.54185 -17.03314 -16.21652 -16.16148 -15.85423 -15.37506 -14.80297 -14.68184 -14.52310 -14.40184 -14.34983 -14.10830 -13.92375 -13.23253 -12.90012 -12.66728 -12.60622 -12.47527 -12.43750 -12.28292 -12.01630 -11.80931 -11.80115 -11.67919 -11.21056 -11.00508 -10.63954 -10.59925 -10.47265 -10.41092 -10.39233 -10.17492 -9.64883 -9.27648 -9.19675 -9.01959 -8.30509 -5.95251 -3.98064 -0.30791 1.05845 1.82975 1.99440 2.32356 2.59950 3.06911 3.25075 3.35478 3.40222 3.42049 3.77099 3.93272 4.01293 4.11442 4.34400 4.49129 4.57706 4.67815 4.77419 4.79981 4.94693 4.99903 5.09593 5.16050 5.17032 5.24638 5.40076 5.50710 5.64698 6.03134 6.15037 6.21032 6.25753 6.42901 6.45353 6.75993 6.94089 7.16335 7.24694 7.47702 7.72904 7.88191 8.05447 8.46678 9.09370 9.65672 11.15935 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.002128 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.923121 B =13156.011454 C =13978.169459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.111 4.111 12 C -0.139 4.139 13 C 0.529 3.471 14 O -0.478 6.478 15 N -1.050 6.050 16 S 2.711 3.289 17 O -0.917 6.917 18 O -0.950 6.950 19 C -0.581 4.581 20 C 0.115 3.885 21 N -0.482 5.482 22 C 0.234 3.766 23 N -0.432 5.432 24 C 0.083 3.917 25 C -0.127 4.127 26 C -0.047 4.047 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.438 0.562 37 H 0.193 0.807 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 -31.397 -6.395 32.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.181 4.181 13 C 0.317 3.683 14 O -0.349 6.349 15 N -0.819 5.819 16 S 2.798 3.202 17 O -0.906 6.906 18 O -0.940 6.940 19 C -0.776 4.776 20 C -0.041 4.041 21 N -0.200 5.200 22 C -0.031 4.031 23 N -0.113 5.113 24 C -0.038 4.038 25 C -0.165 4.165 26 C -0.086 4.086 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.276 0.724 37 H 0.210 0.790 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.653 -31.585 -6.156 32.386 hybrid contribution 1.147 0.830 0.055 1.417 sum 4.800 -30.755 -6.101 31.720 Atomic orbital electron populations 1.69960 1.06037 1.26666 1.50709 1.25040 0.94847 0.99239 0.95446 0.86670 0.79564 0.83268 0.78525 1.20295 1.21345 1.20306 1.21227 0.92926 0.91179 1.50673 0.92798 1.19099 0.94046 0.91207 0.97426 1.21652 0.99139 0.93709 1.00296 1.21590 0.97075 0.92671 1.03583 1.22006 1.00448 0.90222 1.05399 1.21429 0.88534 0.86013 0.72331 1.90915 1.13188 1.86781 1.43967 1.55063 1.22028 1.23294 1.81518 1.01775 0.73455 0.72192 0.72796 1.93693 1.60310 1.84572 1.52026 1.93613 1.60024 1.53434 1.86892 1.32729 1.29241 0.90875 1.24784 1.22805 0.93108 0.99056 0.89147 1.70046 1.22166 1.05376 1.22426 1.24971 0.95870 0.92850 0.89441 1.45961 1.41008 1.06065 1.18313 1.22800 1.05470 0.75066 1.00426 1.22784 1.01570 0.98973 0.93154 1.20838 1.01460 0.86537 0.99812 0.92957 0.96503 0.96503 0.93265 0.93268 0.91283 0.91202 0.87639 0.87646 0.72421 0.79011 0.87527 0.88285 0.87291 0.88814 0.87631 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.11 5.15 -26.73 -0.14 -2.25 16 11 C -0.11 -1.76 4.50 -26.72 -0.12 -1.88 16 12 C -0.14 -1.49 5.70 -27.88 -0.16 -1.65 16 13 C 0.53 6.18 6.86 -10.99 -0.08 6.11 16 14 O -0.48 -7.43 12.53 -11.50 -0.14 -7.57 16 15 N -1.05 -9.31 5.69 31.22 0.18 -9.13 16 16 S 2.71 31.63 5.56 -107.50 -0.60 31.04 16 17 O -0.92 -14.27 16.97 -64.60 -1.10 -15.37 16 18 O -0.95 -11.16 18.02 -57.17 -1.03 -12.19 16 19 C -0.58 -7.41 7.20 -16.45 -0.12 -7.53 16 20 C 0.11 1.63 10.75 -17.90 -0.19 1.43 16 21 N -0.48 -6.98 11.26 -10.56 -0.12 -7.10 16 22 C 0.23 2.60 8.58 -154.86 -1.33 1.27 16 23 N -0.43 -4.70 3.61 -111.32 -0.40 -5.10 16 24 C 0.08 0.51 7.78 -3.03 -0.02 0.49 16 25 C -0.13 -0.36 7.17 -25.19 -0.18 -0.54 16 26 C -0.05 -0.25 6.86 -26.65 -0.18 -0.43 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.44 1.99 8.83 -34.47 -0.30 1.69 16 37 H 0.19 2.64 5.47 -52.48 -0.29 2.35 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -40.54 372.13 -11.00 -51.54 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.05 Total: -3.73 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -3.07 Total: -18.17 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.39 Total: -47.85 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -2.27 Total: -35.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 31.63 SS G_CDS: -0.60 Total: 31.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.54 -11.00 -51.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805923906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.387 kcal (2) G-P(sol) polarization free energy of solvation -40.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds