Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38597 * 120.80370 * 2 1 4 4 N 1.32333 * 119.10705 * 180.02562 * 3 2 1 5 5 C 1.31797 * 120.81852 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.12147 * 179.97438 * 5 4 3 7 7 O 1.45205 * 109.46967 * 89.99890 * 6 5 4 8 8 C 1.34752 * 116.99525 * 179.97438 * 7 6 5 9 9 O 1.21510 * 120.00352 * 359.97438 * 8 7 6 10 10 C 1.47462 * 119.99757 * 179.97438 * 8 7 6 11 11 C 1.39840 * 120.06951 * 359.72668 * 10 8 7 12 12 C 1.37610 * 119.93233 * 179.71669 * 11 10 8 13 13 C 1.39271 * 120.06688 * 0.55809 * 12 11 10 14 14 N 1.39073 * 119.93091 * 179.69899 * 13 12 11 15 15 C 1.34779 * 119.99802 * 213.66568 * 14 13 12 16 16 O 1.21723 * 119.99873 * 5.27956 * 15 14 13 17 17 C 1.46201 * 119.99829 * 185.27870 * 15 14 13 18 18 H 1.07998 * 119.99931 * 359.97438 * 17 15 14 19 19 C 1.40123 * 119.99529 * 179.97438 * 17 15 14 20 20 N 1.30632 * 120.00468 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99738 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46740 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46952 * 120.00105 * 21 19 17 24 24 H 1.48497 * 109.47335 * 240.00460 * 21 19 17 25 25 C 1.39268 * 120.13476 * 359.71831 * 13 12 11 26 26 C 1.37602 * 120.07114 * 359.97438 * 25 13 12 27 27 N 1.31802 * 121.75302 * 359.97438 * 5 4 3 28 28 C 1.32332 * 120.81883 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.46934 * 269.97668 * 1 2 3 30 30 H 1.08996 * 109.46798 * 29.97627 * 1 2 3 31 31 H 1.09001 * 109.47158 * 149.98257 * 1 2 3 32 32 H 1.08001 * 120.44507 * 0.04679 * 3 2 1 33 33 H 1.08997 * 109.46768 * 209.99227 * 6 5 4 34 34 H 1.09000 * 109.47565 * 329.99745 * 6 5 4 35 35 H 1.08000 * 120.02944 * 359.97400 * 11 10 8 36 36 H 1.07997 * 119.96045 * 180.27729 * 12 11 10 37 37 H 0.96998 * 120.00235 * 33.66276 * 14 13 12 38 38 H 0.97007 * 120.00145 * 180.02562 * 20 19 17 39 39 H 1.08002 * 119.96784 * 179.97438 * 25 13 12 40 40 H 1.07998 * 120.03927 * 179.97438 * 26 25 13 41 41 H 1.07994 * 120.44803 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1904 0.0000 4 7 3.5395 1.1513 -0.0005 5 6 4.1809 -0.0001 -0.0015 6 6 5.6879 -0.0001 -0.0027 7 8 6.1729 -0.0007 1.3660 8 6 7.5089 -0.0013 1.5414 9 8 8.2484 -0.0018 0.5772 10 6 8.0736 -0.0013 2.9036 11 6 7.2240 0.0050 4.0143 12 6 7.7540 -0.0010 5.2843 13 6 9.1350 -0.0016 5.4640 14 7 9.6676 -0.0013 6.7488 15 6 10.8234 0.6453 6.9990 16 8 11.3512 1.3085 6.1253 17 6 11.4431 0.5501 8.3197 18 1 10.9745 -0.0380 9.0949 19 6 12.6450 1.2219 8.5796 20 7 13.2115 1.9337 7.6421 21 14 13.4365 1.1009 10.2673 22 1 12.6023 0.2409 11.1447 23 1 14.7916 0.5077 10.1371 24 1 13.5450 2.4574 10.8617 25 6 9.9838 -0.0021 4.3599 26 6 9.4599 -0.0025 3.0875 27 7 3.5394 -1.1515 -0.0016 28 6 2.2167 -1.1906 -0.0011 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6973 2.1373 0.0008 33 1 6.0508 -0.8899 -0.5171 34 1 6.0509 0.8901 -0.5164 35 1 6.1530 0.0104 3.8755 36 1 7.0982 -0.0006 6.1424 37 1 9.2072 -0.4664 7.4647 38 1 14.0438 2.3985 7.8219 39 1 11.0544 -0.0021 4.5024 40 1 10.1186 -0.0025 2.2316 41 1 1.6972 -2.1373 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808489177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -47.635866 kcal Electronic energy + Delta-G solvation = -26996.907700 eV Core-core repulsion = 22842.096615 eV Total energy + Delta-G solvation = -4154.811085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56116 -40.32235 -39.13585 -37.07767 -36.33213 -34.48677 -34.16389 -33.64867 -32.58090 -30.64421 -30.20641 -29.25559 -26.67039 -26.03222 -25.12720 -23.56880 -22.55641 -22.22505 -20.91931 -19.89531 -18.27420 -17.99919 -17.75320 -17.41582 -16.62610 -16.12898 -16.12078 -15.60384 -15.35206 -14.94399 -14.49556 -14.34844 -14.10627 -14.02947 -13.69474 -13.58101 -13.28855 -13.16595 -12.98169 -12.88027 -12.68844 -12.52617 -12.01583 -11.88299 -11.35861 -11.34431 -11.26566 -11.18154 -10.81239 -10.77571 -10.69005 -10.38829 -10.37947 -9.71888 -9.64090 -9.50467 -9.00760 -8.62174 -7.89599 -7.31118 -6.44656 -4.92744 0.27796 0.66295 1.13973 1.86760 2.51533 2.84586 3.01876 3.09871 3.14217 3.36950 3.61888 3.70182 3.90974 4.11574 4.13313 4.27163 4.31157 4.41766 4.46433 4.72904 4.93846 4.95797 4.98897 5.12823 5.17982 5.30638 5.34971 5.38464 5.45987 5.52119 5.77361 5.91138 5.92273 6.07714 6.31220 6.43342 6.51944 6.60244 6.84422 6.89652 7.16341 7.21562 7.58441 7.63803 7.87262 7.92155 8.02781 8.75064 9.04261 10.24682 10.45448 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.001776 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.766948 B =15763.159855 C =16362.468365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.187 4.187 3 C 0.147 3.853 4 N -0.495 5.495 5 C 0.311 3.689 6 C 0.140 3.860 7 O -0.349 6.349 8 C 0.522 3.478 9 O -0.516 6.516 10 C -0.186 4.186 11 C -0.034 4.034 12 C -0.196 4.196 13 C 0.237 3.763 14 N -0.694 5.694 15 C 0.537 3.463 16 O -0.554 6.554 17 C -0.535 4.535 18 H 0.074 0.926 19 C 0.085 3.915 20 N -0.755 5.755 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.147 4.147 26 C -0.027 4.027 27 N -0.495 5.495 28 C 0.147 3.853 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.172 0.828 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.397 0.603 38 H 0.273 0.727 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.546 -5.261 -11.918 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.191 4.191 3 C -0.019 4.019 4 N -0.209 5.209 5 C 0.044 3.956 6 C 0.064 3.936 7 O -0.265 6.265 8 C 0.370 3.630 9 O -0.406 6.406 10 C -0.189 4.189 11 C -0.053 4.053 12 C -0.217 4.217 13 C 0.135 3.865 14 N -0.335 5.335 15 C 0.345 3.655 16 O -0.436 6.436 17 C -0.571 4.571 18 H 0.093 0.907 19 C -0.136 4.136 20 N -0.383 5.383 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.168 4.168 26 C -0.046 4.046 27 N -0.209 5.209 28 C -0.020 4.020 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.231 0.769 38 H 0.084 0.916 39 H 0.166 0.834 40 H 0.150 0.850 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -21.663 -4.640 -12.792 25.583 hybrid contribution -0.917 -0.185 1.077 1.427 sum -22.580 -4.825 -11.715 25.892 Atomic orbital electron populations 1.20686 0.88807 1.03695 1.03215 1.21830 0.99396 0.95681 1.02211 1.23234 0.89222 0.98494 0.90981 1.68220 1.10218 1.30295 1.12125 1.22512 0.96387 0.83789 0.92947 1.21286 0.85059 1.04853 0.82381 1.86555 1.25200 1.84985 1.29768 1.21251 0.79332 0.72095 0.90371 1.90813 1.60069 1.47259 1.42458 1.18731 0.93962 1.17363 0.88798 1.21010 0.99133 0.93979 0.91190 1.20847 0.93570 1.09936 0.97363 1.18294 0.91551 0.89572 0.87050 1.44316 1.27193 1.55001 1.07009 1.18487 0.78015 0.78865 0.90162 1.90661 1.62249 1.42826 1.47820 1.20908 1.07511 1.32323 0.96338 0.90746 1.25764 0.96404 0.93197 0.98284 1.69982 1.14865 1.20892 1.32582 0.86193 0.79343 0.78808 0.81799 1.18585 1.19898 1.19930 1.21297 1.01740 1.03499 0.90255 1.21050 0.92616 0.93349 0.97587 1.68214 1.10208 1.30295 1.12211 1.23225 0.89226 0.98469 0.91053 0.90255 0.90717 0.90727 0.81133 0.88408 0.88390 0.85420 0.85623 0.76902 0.91576 0.83411 0.85008 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.29 10.06 36.01 0.36 0.07 16 2 C -0.19 -1.18 5.91 -104.35 -0.62 -1.79 16 3 C 0.15 1.15 11.01 -17.20 -0.19 0.96 16 4 N -0.49 -5.64 10.33 -10.72 -0.11 -5.75 16 5 C 0.31 3.77 7.28 -157.19 -1.14 2.62 16 6 C 0.14 1.78 5.91 36.00 0.21 1.99 16 7 O -0.35 -5.23 9.44 -40.63 -0.38 -5.62 16 8 C 0.52 8.76 7.89 34.49 0.27 9.03 16 9 O -0.52 -9.48 16.13 -19.27 -0.31 -9.79 16 10 C -0.19 -3.21 5.88 -104.94 -0.62 -3.83 16 11 C -0.03 -0.54 9.60 -39.21 -0.38 -0.91 16 12 C -0.20 -3.24 9.94 -39.43 -0.39 -3.63 16 13 C 0.24 4.74 6.27 -83.81 -0.53 4.22 16 14 N -0.69 -14.74 5.30 -11.18 -0.06 -14.80 16 15 C 0.54 14.30 7.46 -13.06 -0.10 14.20 16 16 O -0.55 -16.72 12.69 5.17 0.07 -16.66 16 17 C -0.54 -14.06 9.54 -35.68 -0.34 -14.40 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 19 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 20 N -0.76 -21.37 11.82 55.55 0.66 -20.71 16 21 Si 0.91 18.94 29.56 -169.99 -5.02 13.91 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.15 -3.06 8.62 -39.43 -0.34 -3.40 16 26 C -0.03 -0.50 9.58 -39.21 -0.38 -0.87 16 27 N -0.50 -5.54 10.33 -10.73 -0.11 -5.65 16 28 C 0.15 1.13 11.01 -17.20 -0.19 0.94 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.13 8.10 -51.93 -0.42 -0.29 16 31 H 0.07 0.12 8.10 -51.93 -0.42 -0.30 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.13 1.74 7.60 -52.49 -0.40 1.34 16 36 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.40 7.06 8.79 -40.82 -0.36 6.70 16 38 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 39 H 0.15 3.47 6.41 -52.49 -0.34 3.13 16 40 H 0.13 2.32 7.64 -52.49 -0.40 1.92 16 41 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -35.00 369.79 -8.58 -43.58 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.42 Total: 8.57 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -4.45 Total: 7.34 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.38 Total: -46.91 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.63 Total: -32.06 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.00 -8.58 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808489177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.056 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds