Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47134 * 270.00249 * 3 2 1 5 5 H 1.48497 * 109.47117 * 29.99978 * 3 2 1 6 6 H 1.48499 * 109.47530 * 149.99980 * 3 2 1 7 7 C 1.37878 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00459 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99690 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.63974 * 298.30987 * 9 7 2 11 11 C 1.55155 * 110.71997 * 61.45209 * 9 7 2 12 12 C 1.54912 * 101.57968 * 153.86530 * 11 9 7 13 13 N 1.47426 * 104.83261 * 322.99067 * 12 11 9 14 14 S 1.65601 * 125.65082 * 203.86262 * 13 12 11 15 15 O 1.42096 * 106.40800 * 203.56439 * 14 13 12 16 16 O 1.42105 * 106.40191 * 336.48958 * 14 13 12 17 17 C 1.76200 * 107.21882 * 90.02174 * 14 13 12 18 18 C 1.34860 * 125.96719 * 269.72259 * 17 14 13 19 19 N 1.36318 * 106.68778 * 179.88489 * 18 17 14 20 20 C 1.35417 * 107.39754 * 0.41567 * 19 18 17 21 21 N 1.30088 * 108.63298 * 359.69451 * 20 19 18 22 22 C 1.51042 * 123.97858 * 179.67504 * 20 19 18 23 23 C 1.53398 * 108.21289 * 344.05359 * 22 20 19 24 24 C 1.53146 * 109.23911 * 48.82197 * 23 22 20 25 25 C 1.46471 * 127.77347 * 180.22478 * 19 18 17 26 26 C 1.47024 * 108.70449 * 24.12870 * 13 12 11 27 27 H 0.96998 * 120.00603 * 359.97438 * 1 2 3 28 28 H 0.96695 * 114.00445 * 61.69174 * 10 9 7 29 29 H 1.08997 * 111.00368 * 35.79722 * 11 9 7 30 30 H 1.08992 * 111.03872 * 271.95187 * 11 9 7 31 31 H 1.09002 * 110.36496 * 204.15483 * 12 11 9 32 32 H 1.08997 * 110.36790 * 81.83118 * 12 11 9 33 33 H 1.07997 * 126.65271 * 359.96903 * 18 17 14 34 34 H 1.08998 * 109.71639 * 103.72924 * 22 20 19 35 35 H 1.09001 * 109.71673 * 224.37570 * 22 20 19 36 36 H 1.09002 * 109.51570 * 168.75711 * 23 22 20 37 37 H 1.09005 * 109.50767 * 288.84861 * 23 22 20 38 38 H 1.09010 * 109.46623 * 50.52125 * 24 23 22 39 39 H 1.08995 * 109.47382 * 170.50974 * 24 23 22 40 40 H 1.09000 * 109.58935 * 43.32017 * 25 19 18 41 41 H 1.09004 * 109.69892 * 282.97069 * 25 19 18 42 42 H 1.08995 * 109.88316 * 118.35549 * 26 13 12 43 43 H 1.09002 * 109.88101 * 239.52444 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.4496 -2.6191 1.1752 11 6 0.3765 -2.6269 -1.2769 12 6 0.2721 -4.1650 -1.4295 13 7 1.5932 -4.6754 -1.0201 14 16 2.2547 -6.1215 -1.4821 15 8 3.2075 -6.4639 -0.4851 16 8 1.1677 -6.9639 -1.8403 17 6 3.1660 -5.8293 -2.9616 18 6 2.6862 -5.9214 -4.2186 19 7 3.7177 -5.6133 -5.0549 20 6 4.7996 -5.3511 -4.2838 21 7 4.4610 -5.4814 -3.0345 22 6 6.1555 -4.9738 -4.8320 23 6 6.1863 -5.3321 -6.3233 24 6 4.9277 -4.7820 -7.0006 25 6 3.7028 -5.5671 -6.5188 26 6 2.2235 -3.6908 -0.1285 27 1 -0.4851 0.8400 0.0004 28 1 -0.2286 -1.9351 1.2607 29 1 0.8744 -2.1819 -2.1383 30 1 -0.6065 -2.1820 -1.1234 31 1 0.0677 -4.4303 -2.4668 32 1 -0.5061 -4.5591 -0.7759 33 1 1.6797 -6.1864 -4.5067 34 1 6.3174 -3.9031 -4.7078 35 1 6.9324 -5.5274 -4.3048 36 1 7.0701 -4.8922 -6.7853 37 1 6.2174 -6.4158 -6.4367 38 1 4.8080 -3.7292 -6.7445 39 1 5.0225 -4.8843 -8.0815 40 1 2.7938 -5.0714 -6.8595 41 1 3.7381 -6.5806 -6.9187 42 1 2.3952 -4.1350 0.8519 43 1 3.1680 -3.3547 -0.5562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828045112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -64.264478 kcal Electronic energy + Delta-G solvation = -28694.971352 eV Core-core repulsion = 24674.883147 eV Total energy + Delta-G solvation = -4020.088205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52788 -37.97611 -36.95511 -36.75778 -35.39401 -34.21459 -33.56472 -32.15104 -30.25115 -29.04995 -28.87239 -28.21084 -24.85915 -24.73141 -22.65374 -22.34342 -21.42716 -19.74057 -19.39182 -18.45346 -17.63911 -17.31647 -16.80214 -16.27313 -16.16663 -15.30013 -14.91502 -14.80336 -14.59441 -14.42578 -14.19377 -14.05920 -14.00866 -13.74381 -13.21611 -12.87626 -12.34472 -12.08187 -11.94318 -11.74870 -11.64893 -11.62018 -11.58264 -11.55315 -11.47326 -11.30680 -11.22662 -10.99154 -10.79596 -10.46076 -10.35579 -10.11768 -10.03981 -9.93220 -9.26258 -8.81445 -8.62172 -8.31593 -8.11521 -6.23358 -4.30283 0.80364 1.60206 2.43220 2.60699 3.21314 3.29154 3.34194 3.58004 3.89629 4.12035 4.16029 4.21100 4.27377 4.29971 4.55924 4.73585 4.74125 4.88510 4.97186 5.04687 5.20249 5.27295 5.33815 5.42082 5.48646 5.54770 5.69636 5.85377 5.95602 6.04580 6.12198 6.21422 6.29351 6.56706 6.74701 6.87728 6.90484 7.03593 7.12247 7.40377 7.45476 7.77103 7.79037 8.11083 8.72202 9.37242 9.48016 10.84099 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.004125 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.612915 B = 6786.375469 C = 8236.922495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.131 4.131 12 C 0.120 3.880 13 N -1.002 6.002 14 S 2.739 3.261 15 O -0.947 6.947 16 O -0.964 6.964 17 C -0.555 4.555 18 C 0.067 3.933 19 N -0.452 5.452 20 C 0.206 3.794 21 N -0.405 5.405 22 C -0.035 4.035 23 C -0.126 4.126 24 C -0.137 4.137 25 C 0.097 3.903 26 C 0.138 3.862 27 H 0.267 0.733 28 H 0.381 0.619 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.192 0.808 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -8.620 -17.170 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.171 4.171 12 C -0.005 4.005 13 N -0.843 5.843 14 S 2.826 3.174 15 O -0.937 6.937 16 O -0.954 6.954 17 C -0.765 4.765 18 C -0.075 4.075 19 N -0.133 5.133 20 C -0.060 4.060 21 N -0.121 5.121 22 C -0.074 4.074 23 C -0.164 4.164 24 C -0.174 4.174 25 C -0.025 4.025 26 C 0.014 3.986 27 H 0.077 0.923 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.209 0.791 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.188 -9.783 -16.172 20.221 hybrid contribution -0.344 1.752 -1.633 2.420 sum 6.843 -8.030 -17.805 20.696 Atomic orbital electron populations 1.69700 1.05908 1.27474 1.50497 1.24974 0.94995 0.99384 0.93669 0.86452 0.80010 0.82631 0.78067 1.20709 1.21058 1.19649 1.21573 0.93720 0.90327 1.51494 0.91762 1.19451 0.86918 0.90507 0.82220 1.86133 1.51737 1.56397 1.44987 1.23282 1.02554 0.90491 1.00759 1.22135 0.83149 0.97359 0.97821 1.58444 1.27492 1.38033 1.60288 1.00626 0.72420 0.71803 0.72566 1.93540 1.62781 1.81453 1.55903 1.93550 1.53109 1.63685 1.85092 1.33853 1.03230 1.21963 1.17446 1.22509 0.94470 1.01329 0.89151 1.45675 1.09924 1.49884 1.07803 1.23681 0.91566 1.04517 0.86212 1.70123 1.09956 1.14591 1.17460 1.20260 0.89214 1.03182 0.94743 1.21694 0.98284 1.01868 0.94529 1.21926 0.93286 1.00701 1.01511 1.22126 1.01317 1.02611 0.76416 1.21839 0.96150 0.88546 0.92076 0.92327 0.76897 0.91830 0.89584 0.92694 0.91633 0.79062 0.88723 0.88272 0.89655 0.91081 0.90195 0.89008 0.88627 0.89291 0.91585 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.11 10.67 55.43 0.59 -22.52 16 2 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -14.06 8.21 -34.44 -0.28 -14.34 16 8 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 9 C 0.25 6.15 0.85 -89.93 -0.08 6.08 16 10 O -0.58 -14.91 13.08 -35.23 -0.46 -15.37 16 11 C -0.13 -2.89 5.47 -24.58 -0.13 -3.03 16 12 C 0.12 2.32 6.98 -2.53 -0.02 2.30 16 13 N -1.00 -20.42 3.70 -111.42 -0.41 -20.83 16 14 S 2.74 53.05 6.09 -107.50 -0.66 52.39 16 15 O -0.95 -21.12 17.60 -57.17 -1.01 -22.12 16 16 O -0.96 -18.79 17.42 -57.17 -1.00 -19.78 16 17 C -0.55 -9.72 7.14 -17.67 -0.13 -9.85 16 18 C 0.07 0.93 11.37 -16.76 -0.19 0.74 16 19 N -0.45 -5.39 3.13 -113.75 -0.36 -5.74 16 20 C 0.21 2.86 7.65 -155.25 -1.19 1.68 16 21 N -0.40 -7.31 11.24 -9.83 -0.11 -7.42 16 22 C -0.04 -0.33 6.33 -27.51 -0.17 -0.50 16 23 C -0.13 -0.73 5.96 -26.45 -0.16 -0.89 16 24 C -0.14 -0.73 5.94 -26.52 -0.16 -0.89 16 25 C 0.10 0.66 6.98 -3.92 -0.03 0.64 16 26 C 0.14 3.16 6.34 -3.06 -0.02 3.14 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 28 H 0.38 9.66 7.46 45.56 0.34 10.00 16 29 H 0.06 1.42 8.04 -51.93 -0.42 1.01 16 30 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.08 0.50 8.12 -51.92 -0.42 0.08 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.54 8.07 -51.93 -0.42 1.12 16 43 H 0.07 1.59 7.66 -51.93 -0.40 1.19 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -34.19 362.38 -11.08 -45.27 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.47 Total: 8.51 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.64 Total: -13.16 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.29 Total: -56.51 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -2.46 Total: -57.28 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -0.66 Total: 52.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.19 -11.08 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.999 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds