Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47134 * 270.00249 * 3 2 1 5 5 H 1.48497 * 109.47117 * 29.99978 * 3 2 1 6 6 H 1.48499 * 109.47530 * 149.99980 * 3 2 1 7 7 C 1.37878 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00459 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99690 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.63974 * 298.30987 * 9 7 2 11 11 C 1.55155 * 110.71997 * 61.45209 * 9 7 2 12 12 C 1.54912 * 101.57968 * 153.86530 * 11 9 7 13 13 N 1.47426 * 104.83261 * 322.99067 * 12 11 9 14 14 S 1.65601 * 125.65082 * 203.86262 * 13 12 11 15 15 O 1.42096 * 106.40800 * 203.56439 * 14 13 12 16 16 O 1.42105 * 106.40191 * 336.48958 * 14 13 12 17 17 C 1.76200 * 107.21882 * 90.02174 * 14 13 12 18 18 C 1.34860 * 125.96719 * 269.72259 * 17 14 13 19 19 N 1.36318 * 106.68778 * 179.88489 * 18 17 14 20 20 C 1.35417 * 107.39754 * 0.41567 * 19 18 17 21 21 N 1.30088 * 108.63298 * 359.69451 * 20 19 18 22 22 C 1.51042 * 123.97858 * 179.67504 * 20 19 18 23 23 C 1.53398 * 108.21289 * 344.05359 * 22 20 19 24 24 C 1.53146 * 109.23911 * 48.82197 * 23 22 20 25 25 C 1.46471 * 127.77347 * 180.22478 * 19 18 17 26 26 C 1.47024 * 108.70449 * 24.12870 * 13 12 11 27 27 H 0.96998 * 120.00603 * 359.97438 * 1 2 3 28 28 H 0.96695 * 114.00445 * 61.69174 * 10 9 7 29 29 H 1.08997 * 111.00368 * 35.79722 * 11 9 7 30 30 H 1.08992 * 111.03872 * 271.95187 * 11 9 7 31 31 H 1.09002 * 110.36496 * 204.15483 * 12 11 9 32 32 H 1.08997 * 110.36790 * 81.83118 * 12 11 9 33 33 H 1.07997 * 126.65271 * 359.96903 * 18 17 14 34 34 H 1.08998 * 109.71639 * 103.72924 * 22 20 19 35 35 H 1.09001 * 109.71673 * 224.37570 * 22 20 19 36 36 H 1.09002 * 109.51570 * 168.75711 * 23 22 20 37 37 H 1.09005 * 109.50767 * 288.84861 * 23 22 20 38 38 H 1.09010 * 109.46623 * 50.52125 * 24 23 22 39 39 H 1.08995 * 109.47382 * 170.50974 * 24 23 22 40 40 H 1.09000 * 109.58935 * 43.32017 * 25 19 18 41 41 H 1.09004 * 109.69892 * 282.97069 * 25 19 18 42 42 H 1.08995 * 109.88316 * 118.35549 * 26 13 12 43 43 H 1.09002 * 109.88101 * 239.52444 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.4496 -2.6191 1.1752 11 6 0.3765 -2.6269 -1.2769 12 6 0.2721 -4.1650 -1.4295 13 7 1.5932 -4.6754 -1.0201 14 16 2.2547 -6.1215 -1.4821 15 8 3.2075 -6.4639 -0.4851 16 8 1.1677 -6.9639 -1.8403 17 6 3.1660 -5.8293 -2.9616 18 6 2.6862 -5.9214 -4.2186 19 7 3.7177 -5.6133 -5.0549 20 6 4.7996 -5.3511 -4.2838 21 7 4.4610 -5.4814 -3.0345 22 6 6.1555 -4.9738 -4.8320 23 6 6.1863 -5.3321 -6.3233 24 6 4.9277 -4.7820 -7.0006 25 6 3.7028 -5.5671 -6.5188 26 6 2.2235 -3.6908 -0.1285 27 1 -0.4851 0.8400 0.0004 28 1 -0.2286 -1.9351 1.2607 29 1 0.8744 -2.1819 -2.1383 30 1 -0.6065 -2.1820 -1.1234 31 1 0.0677 -4.4303 -2.4668 32 1 -0.5061 -4.5591 -0.7759 33 1 1.6797 -6.1864 -4.5067 34 1 6.3174 -3.9031 -4.7078 35 1 6.9324 -5.5274 -4.3048 36 1 7.0701 -4.8922 -6.7853 37 1 6.2174 -6.4158 -6.4367 38 1 4.8080 -3.7292 -6.7445 39 1 5.0225 -4.8843 -8.0815 40 1 2.7938 -5.0714 -6.8595 41 1 3.7381 -6.5806 -6.9187 42 1 2.3952 -4.1350 0.8519 43 1 3.1680 -3.3547 -0.5562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -90.741055 kcal Electronic energy + Delta-G solvation = -28696.119462 eV Core-core repulsion = 24674.883147 eV Total energy + Delta-G solvation = -4021.236315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.52901 -39.78283 -38.34369 -37.60939 -37.00149 -36.08469 -34.41222 -34.16905 -31.09504 -30.83244 -30.03068 -29.74199 -26.71252 -25.51029 -23.60028 -23.31283 -23.01005 -21.61342 -20.15266 -19.95217 -19.18254 -18.82848 -18.34930 -17.30395 -17.17438 -16.88400 -16.81977 -16.20654 -15.91726 -15.48432 -15.19962 -15.10926 -14.97542 -14.72373 -14.65309 -14.38341 -13.94406 -13.73808 -13.39399 -13.31819 -13.23611 -13.16157 -13.03664 -12.81576 -12.69518 -12.61283 -12.27602 -12.16940 -12.12856 -12.07113 -11.93930 -11.92859 -11.22572 -11.16617 -10.86797 -10.60434 -10.10009 -10.02070 -9.84225 -8.20907 -6.35092 -0.69283 0.52171 1.41285 1.44072 1.45204 1.54459 1.61519 2.11220 2.40762 2.72473 2.95451 3.05269 3.40532 3.53542 3.61924 3.76479 3.78791 3.93709 4.02732 4.14230 4.28064 4.30939 4.37955 4.41522 4.45651 4.65615 4.69538 4.79328 4.80659 4.90757 4.95933 5.02486 5.07407 5.17947 5.20183 5.23440 5.24956 5.38074 5.55387 5.57756 5.80669 5.98667 6.14050 6.68153 6.70270 7.35111 7.46267 8.85160 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.004125 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.612915 B = 6786.375469 C = 8236.922495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.561 4.561 8 H 0.052 0.948 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.119 4.119 12 C 0.121 3.879 13 N -1.006 6.006 14 S 2.755 3.245 15 O -0.987 6.987 16 O -0.968 6.968 17 C -0.592 4.592 18 C 0.083 3.917 19 N -0.444 5.444 20 C 0.205 3.795 21 N -0.463 5.463 22 C -0.041 4.041 23 C -0.119 4.119 24 C -0.134 4.134 25 C 0.084 3.916 26 C 0.145 3.855 27 H 0.271 0.729 28 H 0.379 0.621 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 -8.498 -20.719 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.163 4.163 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.600 4.600 8 H 0.070 0.930 9 C 0.195 3.805 10 O -0.401 6.401 11 C -0.159 4.159 12 C -0.003 4.003 13 N -0.845 5.845 14 S 2.846 3.154 15 O -0.977 6.977 16 O -0.958 6.958 17 C -0.804 4.804 18 C -0.062 4.062 19 N -0.124 5.124 20 C -0.062 4.062 21 N -0.180 5.180 22 C -0.079 4.079 23 C -0.157 4.157 24 C -0.171 4.171 25 C -0.035 4.035 26 C 0.020 3.980 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.297 -9.672 -19.711 23.137 hybrid contribution -0.341 1.696 -0.620 1.838 sum 6.957 -7.976 -20.332 22.921 Atomic orbital electron populations 1.69761 1.06540 1.28283 1.49910 1.25572 0.95841 1.01817 0.93107 0.85572 0.78620 0.79235 0.78246 1.19921 1.20373 1.20205 1.21761 0.93446 0.91818 1.52952 0.92985 1.19638 0.87514 0.90508 0.82873 1.86121 1.51800 1.56284 1.45922 1.23051 1.01241 0.92529 0.99044 1.22198 0.82701 0.95235 1.00187 1.58404 1.27950 1.37626 1.60522 0.99789 0.71884 0.71124 0.72600 1.93481 1.63761 1.82087 1.58415 1.93528 1.53393 1.63601 1.85260 1.33169 1.03759 1.25898 1.17601 1.23000 0.95940 0.99003 0.88234 1.46030 1.08620 1.47968 1.09769 1.24424 0.93445 1.02831 0.85523 1.70022 1.10637 1.17011 1.20366 1.20535 0.86855 1.03279 0.97274 1.21710 0.99770 1.02388 0.91784 1.21984 0.92096 0.99684 1.03330 1.22671 1.03098 1.04700 0.73074 1.21582 0.95858 0.88654 0.91942 0.91966 0.77165 0.92458 0.90431 0.88884 0.91437 0.75822 0.88520 0.88282 0.87279 0.90620 0.91203 0.85659 0.86704 0.86906 0.93105 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.68 10.67 21.45 0.23 -46.45 16 2 C 0.04 1.97 5.28 84.66 0.45 2.41 16 3 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.56 -30.33 8.21 25.60 0.21 -30.12 16 8 H 0.05 2.85 7.57 -2.91 -0.02 2.83 16 9 C 0.24 11.88 0.85 -10.35 -0.01 11.87 16 10 O -0.59 -31.12 13.08 -148.98 -1.95 -33.07 16 11 C -0.12 -5.27 5.47 31.99 0.17 -5.10 16 12 C 0.12 4.60 6.98 86.86 0.61 5.20 16 13 N -1.01 -41.62 3.70 -506.41 -1.87 -43.49 16 14 S 2.76 108.41 6.09 -56.49 -0.34 108.06 16 15 O -0.99 -46.06 17.60 -128.00 -2.25 -48.31 16 16 O -0.97 -37.15 17.42 -128.00 -2.23 -39.38 16 17 C -0.59 -20.65 7.14 83.54 0.60 -20.05 16 18 C 0.08 2.12 11.37 83.22 0.95 3.07 16 19 N -0.44 -9.48 3.13 -513.81 -1.61 -11.09 16 20 C 0.20 5.49 7.65 138.24 1.06 6.55 16 21 N -0.46 -16.95 11.24 -185.01 -2.08 -19.04 16 22 C -0.04 -0.69 6.33 30.09 0.19 -0.50 16 23 C -0.12 -0.98 5.96 30.78 0.18 -0.80 16 24 C -0.13 -0.87 5.94 30.73 0.18 -0.69 16 25 C 0.08 0.80 6.98 86.47 0.60 1.40 16 26 C 0.15 6.91 6.34 86.73 0.55 7.46 16 27 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 28 H 0.38 19.70 7.46 -74.06 -0.55 19.14 16 29 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 30 H 0.08 3.54 7.54 -2.39 -0.02 3.52 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.59 8.12 -2.38 -0.02 0.57 16 38 H 0.07 0.64 8.12 -2.38 -0.02 0.62 16 39 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.05 2.51 8.07 -2.39 -0.02 2.49 16 43 H 0.06 3.06 7.66 -2.39 -0.02 3.04 16 Total: -1.00 -76.42 362.38 -3.86 -80.28 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.48 Total: 28.09 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 5.74 Total: -19.29 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -5.33 Total: -120.06 kcal Atomic # 8 Polarization: -114.33 SS G_CDS: -6.43 Total: -120.76 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 108.41 SS G_CDS: -0.34 Total: 108.06 kcal Total: -76.42 -3.86 -80.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.463 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds