Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31943 * 120.49661 * 2 1 4 4 C 1.32722 * 120.89786 * 180.30777 * 3 2 1 5 5 C 1.48161 * 119.04536 * 179.67627 * 4 3 2 6 6 C 1.39458 * 120.12981 * 359.70364 * 5 4 3 7 7 C 1.37989 * 119.86492 * 179.69844 * 6 5 4 8 8 C 1.38343 * 120.13208 * 0.57604 * 7 6 5 9 9 C 1.38346 * 120.26641 * 359.72610 * 8 7 6 10 10 C 1.37983 * 120.13488 * 359.97268 * 9 8 7 11 11 N 1.32754 * 121.91354 * 359.65510 * 4 3 2 12 12 C 1.31921 * 120.89897 * 0.02562 * 11 4 3 13 13 C 1.40152 * 120.48928 * 179.68383 * 2 1 3 14 14 C 1.47558 * 120.87134 * 0.02562 * 13 2 1 15 15 O 1.21619 * 119.99692 * 300.59869 * 14 13 2 16 16 N 1.34773 * 120.00633 * 120.59593 * 14 13 2 17 17 C 1.36848 * 120.00507 * 184.40521 * 16 14 13 18 18 H 1.08004 * 119.99399 * 346.85631 * 17 16 14 19 19 C 1.39059 * 120.00430 * 166.85559 * 17 16 14 20 20 N 1.31353 * 119.99466 * 359.84728 * 19 17 16 21 21 Si 1.86794 * 120.00088 * 179.84420 * 19 17 16 22 22 H 1.48506 * 109.47221 * 60.00218 * 21 19 17 23 23 H 1.48500 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47393 * 300.00394 * 21 19 17 25 25 C 1.46499 * 119.99521 * 4.39546 * 16 14 13 26 26 C 1.50699 * 109.47747 * 263.21495 * 25 16 14 27 27 O 1.20833 * 119.99514 * 0.02562 * 26 25 16 28 28 O 1.34226 * 120.00567 * 180.02562 * 26 25 16 29 29 H 1.09000 * 109.47532 * 274.84146 * 1 2 3 30 30 H 1.09007 * 109.46425 * 34.83664 * 1 2 3 31 31 H 1.08995 * 109.47309 * 154.83185 * 1 2 3 32 32 H 1.08001 * 120.06848 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.93346 * 180.32452 * 7 6 5 34 34 H 1.07995 * 119.86856 * 179.73845 * 8 7 6 35 35 H 1.08001 * 119.93414 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.06811 * 180.02562 * 10 9 8 37 37 H 1.07994 * 120.49407 * 179.97438 * 12 11 4 38 38 H 0.97006 * 119.99519 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47168 * 23.21997 * 25 16 14 40 40 H 1.09006 * 109.46608 * 143.21797 * 25 16 14 41 41 H 0.96700 * 117.00281 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1766 1.1369 0.0000 4 6 3.5038 1.1462 -0.0061 5 6 4.2140 2.4465 -0.0132 6 6 3.4910 3.6390 -0.0196 7 6 4.1580 4.8470 -0.0198 8 6 5.5411 4.8766 -0.0258 9 6 6.2638 3.6969 -0.0258 10 6 5.6081 2.4828 -0.0193 11 7 4.2134 0.0243 -0.0057 12 6 3.6190 -1.1534 0.0004 13 6 2.2181 -1.2077 0.0067 14 6 1.5109 -2.5027 0.0132 15 8 0.7485 -2.7746 0.9210 16 7 1.7096 -3.3843 -0.9866 17 6 0.9871 -4.5458 -1.0286 18 1 0.4191 -4.8598 -0.1653 19 6 0.9844 -5.3217 -2.1826 20 7 1.6729 -4.9382 -3.2334 21 14 0.0017 -6.9093 -2.2382 22 1 -1.4340 -6.6114 -2.0029 23 1 0.1639 -7.5454 -3.5703 24 1 0.4944 -7.8337 -1.1855 25 6 2.6989 -3.0990 -2.0288 26 6 2.0080 -2.5015 -3.2274 27 8 0.8118 -2.3310 -3.2125 28 8 2.7212 -2.1587 -4.3116 29 1 -0.3634 0.0867 1.0240 30 1 -0.3632 0.8436 -0.5871 31 1 -0.3633 -0.9300 -0.4370 32 1 2.4112 3.6172 -0.0190 33 1 3.5992 5.7711 -0.0195 34 1 6.0587 5.8243 -0.0303 35 1 7.3434 3.7262 -0.0301 36 1 6.1733 1.5625 -0.0189 37 1 4.2027 -2.0619 0.0003 38 1 1.6712 -5.4796 -4.0383 39 1 3.4369 -2.3941 -1.6460 40 1 3.1967 -4.0239 -2.3201 41 1 2.2341 -1.7788 -5.0555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832991707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = -26.727236 kcal Electronic energy + Delta-G solvation = -29586.038611 eV Core-core repulsion = 25432.134192 eV Total energy + Delta-G solvation = -4153.904419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07304 -39.46006 -38.86811 -38.05393 -35.43605 -34.63402 -34.14450 -33.23988 -31.84579 -31.01508 -30.25944 -28.47385 -27.78387 -25.68455 -24.32582 -23.35751 -22.14403 -21.51443 -21.11328 -19.78007 -17.77072 -17.42772 -17.28738 -16.95418 -16.58575 -15.95620 -15.57314 -15.16628 -14.93214 -14.73432 -14.59933 -14.43921 -14.18148 -13.63121 -13.43796 -13.31470 -13.09598 -13.01593 -12.75852 -12.49727 -12.07573 -11.94660 -11.85450 -11.50399 -11.36775 -11.16881 -11.13422 -11.08097 -10.62572 -10.53705 -10.42800 -10.28327 -9.77123 -9.61722 -9.21392 -9.08057 -9.01315 -8.84936 -8.38043 -8.19218 -6.61256 -4.12716 0.40619 1.26679 1.35089 1.61115 3.02132 3.13161 3.16209 3.33264 3.56202 3.59305 3.79360 3.90281 4.10492 4.15633 4.23614 4.51713 4.68086 4.86396 4.90123 4.92665 5.01099 5.14706 5.28984 5.39970 5.43898 5.53080 5.74630 5.79146 5.82314 5.91787 5.96538 6.08606 6.21764 6.39659 6.40236 6.43734 6.54124 6.62250 6.64389 6.84999 7.14538 7.30322 7.51684 7.70222 8.12574 8.20611 8.82768 8.98032 9.10244 9.54618 10.40722 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003220 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.090167 B = 8693.145117 C = 9140.803401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.216 3.784 3 N -0.512 5.512 4 C 0.349 3.651 5 C -0.039 4.039 6 C -0.073 4.073 7 C -0.133 4.133 8 C -0.106 4.106 9 C -0.132 4.132 10 C -0.072 4.072 11 N -0.514 5.514 12 C 0.166 3.834 13 C -0.201 4.201 14 C 0.496 3.504 15 O -0.565 6.565 16 N -0.415 5.415 17 C -0.285 4.285 18 H 0.114 0.886 19 C 0.031 3.969 20 N -0.893 5.893 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.140 3.860 26 C 0.501 3.499 27 O -0.519 6.519 28 O -0.533 6.533 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.176 0.824 38 H 0.277 0.723 39 H 0.069 0.931 40 H 0.146 0.854 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 12.817 1.149 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 N -0.227 5.227 4 C 0.085 3.915 5 C -0.041 4.041 6 C -0.092 4.092 7 C -0.151 4.151 8 C -0.125 4.125 9 C -0.151 4.151 10 C -0.092 4.092 11 N -0.228 5.228 12 C -0.001 4.001 13 C -0.209 4.209 14 C 0.283 3.717 15 O -0.448 6.448 16 N -0.133 5.133 17 C -0.412 4.412 18 H 0.131 0.869 19 C -0.170 4.170 20 N -0.535 5.535 21 Si 0.773 3.227 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.196 1.196 25 C 0.014 3.986 26 C 0.342 3.658 27 O -0.406 6.406 28 O -0.343 6.343 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.193 0.807 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.163 0.837 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.943 13.244 1.752 15.542 hybrid contribution -1.136 -1.397 -0.959 2.040 sum 6.808 11.847 0.794 13.687 Atomic orbital electron populations 1.20791 0.87069 1.04438 1.03685 1.21724 0.97655 0.86261 0.87477 1.68121 1.08753 1.30050 1.15762 1.21248 0.86229 0.91913 0.92081 1.18106 0.92733 0.89122 1.04106 1.21366 1.00958 0.90965 0.95958 1.21098 0.94494 0.97705 1.01772 1.21302 0.94308 0.98271 0.98572 1.21102 1.00054 0.92154 1.01741 1.21365 0.93086 0.98796 0.95930 1.68235 1.40817 0.98260 1.15499 1.23428 0.91052 0.95936 0.89722 1.22003 0.96187 0.97555 1.05153 1.17330 0.85617 0.82628 0.86118 1.90670 1.40094 1.77027 1.37052 1.43414 1.33597 1.16723 1.19517 1.19866 1.25383 0.95530 1.00446 0.86851 1.25334 0.96878 1.00626 0.94135 1.69405 1.40782 1.39181 1.04171 0.85650 0.79936 0.79629 0.77500 1.19611 1.20762 1.19580 1.21194 0.90200 1.02621 0.84613 1.23414 0.86536 0.72202 0.83608 1.90583 1.16259 1.51659 1.82054 1.84510 1.46222 1.76516 1.27100 0.89371 0.90390 0.89066 0.84568 0.85690 0.86010 0.85642 0.84446 0.80705 0.91191 0.91341 0.83692 0.75386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.65 36.01 0.35 -1.47 16 2 C 0.22 4.16 6.87 -81.83 -0.56 3.59 16 3 N -0.51 -9.20 9.36 -7.08 -0.07 -9.26 16 4 C 0.35 5.98 7.55 -156.76 -1.18 4.79 16 5 C -0.04 -0.56 5.88 -104.91 -0.62 -1.17 16 6 C -0.07 -0.92 9.56 -39.22 -0.38 -1.29 16 7 C -0.13 -1.33 10.03 -39.63 -0.40 -1.73 16 8 C -0.11 -0.97 10.04 -39.50 -0.40 -1.37 16 9 C -0.13 -1.31 10.03 -39.64 -0.40 -1.71 16 10 C -0.07 -0.89 9.56 -39.22 -0.38 -1.27 16 11 N -0.51 -8.77 9.42 -10.81 -0.10 -8.87 16 12 C 0.17 2.91 8.87 -16.78 -0.15 2.76 16 13 C -0.20 -4.06 4.99 -104.64 -0.52 -4.58 16 14 C 0.50 11.64 5.93 -12.46 -0.07 11.56 16 15 O -0.56 -14.76 16.08 5.26 0.08 -14.67 16 16 N -0.41 -9.99 2.18 -117.27 -0.26 -10.24 16 17 C -0.29 -7.38 9.30 -15.01 -0.14 -7.52 16 18 H 0.11 3.03 7.22 -52.48 -0.38 2.65 16 19 C 0.03 0.76 5.26 -17.45 -0.09 0.67 16 20 N -0.89 -21.84 7.76 55.50 0.43 -21.41 16 21 Si 0.95 19.90 29.55 -169.99 -5.02 14.88 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C 0.14 3.00 5.17 -5.19 -0.03 2.98 16 26 C 0.50 11.29 6.03 36.01 0.22 11.50 16 27 O -0.52 -13.40 16.59 -18.76 -0.31 -13.71 16 28 O -0.53 -10.06 13.42 -39.25 -0.53 -10.59 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.87 6.85 -51.93 -0.36 1.52 16 32 H 0.14 1.72 7.50 -52.49 -0.39 1.32 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.66 7.50 -52.49 -0.39 1.27 16 37 H 0.18 2.64 7.36 -52.49 -0.39 2.25 16 38 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.07 1.28 4.19 -51.93 -0.22 1.07 16 40 H 0.15 3.20 6.30 -51.93 -0.33 2.88 16 41 H 0.39 5.78 9.10 45.56 0.41 6.19 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -31.79 355.20 -8.45 -40.23 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.29 Total: 12.54 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: -4.74 Total: 15.75 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.01 Total: -49.78 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.75 Total: -38.97 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.79 -8.45 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832991707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.504 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds