Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31943 * 120.49661 * 2 1 4 4 C 1.32722 * 120.89786 * 180.30777 * 3 2 1 5 5 C 1.48161 * 119.04536 * 179.67627 * 4 3 2 6 6 C 1.39458 * 120.12981 * 359.70364 * 5 4 3 7 7 C 1.37989 * 119.86492 * 179.69844 * 6 5 4 8 8 C 1.38343 * 120.13208 * 0.57604 * 7 6 5 9 9 C 1.38346 * 120.26641 * 359.72610 * 8 7 6 10 10 C 1.37983 * 120.13488 * 359.97268 * 9 8 7 11 11 N 1.32754 * 121.91354 * 359.65510 * 4 3 2 12 12 C 1.31921 * 120.89897 * 0.02562 * 11 4 3 13 13 C 1.40152 * 120.48928 * 179.68383 * 2 1 3 14 14 C 1.47558 * 120.87134 * 0.02562 * 13 2 1 15 15 O 1.21619 * 119.99692 * 300.59869 * 14 13 2 16 16 N 1.34773 * 120.00633 * 120.59593 * 14 13 2 17 17 C 1.36848 * 120.00507 * 184.40521 * 16 14 13 18 18 H 1.08004 * 119.99399 * 346.85631 * 17 16 14 19 19 C 1.39059 * 120.00430 * 166.85559 * 17 16 14 20 20 N 1.31353 * 119.99466 * 359.84728 * 19 17 16 21 21 Si 1.86794 * 120.00088 * 179.84420 * 19 17 16 22 22 H 1.48506 * 109.47221 * 60.00218 * 21 19 17 23 23 H 1.48500 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47393 * 300.00394 * 21 19 17 25 25 C 1.46499 * 119.99521 * 4.39546 * 16 14 13 26 26 C 1.50699 * 109.47747 * 263.21495 * 25 16 14 27 27 O 1.20833 * 119.99514 * 0.02562 * 26 25 16 28 28 O 1.34226 * 120.00567 * 180.02562 * 26 25 16 29 29 H 1.09000 * 109.47532 * 274.84146 * 1 2 3 30 30 H 1.09007 * 109.46425 * 34.83664 * 1 2 3 31 31 H 1.08995 * 109.47309 * 154.83185 * 1 2 3 32 32 H 1.08001 * 120.06848 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.93346 * 180.32452 * 7 6 5 34 34 H 1.07995 * 119.86856 * 179.73845 * 8 7 6 35 35 H 1.08001 * 119.93414 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.06811 * 180.02562 * 10 9 8 37 37 H 1.07994 * 120.49407 * 179.97438 * 12 11 4 38 38 H 0.97006 * 119.99519 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47168 * 23.21997 * 25 16 14 40 40 H 1.09006 * 109.46608 * 143.21797 * 25 16 14 41 41 H 0.96700 * 117.00281 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1766 1.1369 0.0000 4 6 3.5038 1.1462 -0.0061 5 6 4.2140 2.4465 -0.0132 6 6 3.4910 3.6390 -0.0196 7 6 4.1580 4.8470 -0.0198 8 6 5.5411 4.8766 -0.0258 9 6 6.2638 3.6969 -0.0258 10 6 5.6081 2.4828 -0.0193 11 7 4.2134 0.0243 -0.0057 12 6 3.6190 -1.1534 0.0004 13 6 2.2181 -1.2077 0.0067 14 6 1.5109 -2.5027 0.0132 15 8 0.7485 -2.7746 0.9210 16 7 1.7096 -3.3843 -0.9866 17 6 0.9871 -4.5458 -1.0286 18 1 0.4191 -4.8598 -0.1653 19 6 0.9844 -5.3217 -2.1826 20 7 1.6729 -4.9382 -3.2334 21 14 0.0017 -6.9093 -2.2382 22 1 -1.4340 -6.6114 -2.0029 23 1 0.1639 -7.5454 -3.5703 24 1 0.4944 -7.8337 -1.1855 25 6 2.6989 -3.0990 -2.0288 26 6 2.0080 -2.5015 -3.2274 27 8 0.8118 -2.3310 -3.2125 28 8 2.7212 -2.1587 -4.3116 29 1 -0.3634 0.0867 1.0240 30 1 -0.3632 0.8436 -0.5871 31 1 -0.3633 -0.9300 -0.4370 32 1 2.4112 3.6172 -0.0190 33 1 3.5992 5.7711 -0.0195 34 1 6.0587 5.8243 -0.0303 35 1 7.3434 3.7262 -0.0301 36 1 6.1733 1.5625 -0.0189 37 1 4.2027 -2.0619 0.0003 38 1 1.6712 -5.4796 -4.0383 39 1 3.4369 -2.3941 -1.6460 40 1 3.1967 -4.0239 -2.3201 41 1 2.2341 -1.7788 -5.0555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832991707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = -45.997072 kcal Electronic energy + Delta-G solvation = -29586.874213 eV Core-core repulsion = 25432.134192 eV Total energy + Delta-G solvation = -4154.740022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.50839 -41.12086 -40.09421 -39.55963 -37.19871 -36.40486 -35.60743 -34.63067 -33.58888 -31.87296 -31.38845 -30.00250 -29.49254 -27.27690 -25.84486 -24.58340 -23.17212 -22.90202 -22.56902 -21.41106 -19.20897 -19.17497 -18.65286 -18.45795 -18.30684 -17.34172 -16.91156 -16.85918 -16.44783 -16.23508 -15.90202 -15.76832 -15.53143 -15.10157 -14.90601 -14.57142 -14.32731 -14.27638 -14.14720 -13.77502 -13.70040 -13.55235 -13.37512 -13.12661 -12.81090 -12.73299 -12.50567 -12.21756 -12.20071 -12.16008 -11.96337 -11.74736 -11.53816 -11.06014 -10.99419 -10.64535 -10.47042 -10.07420 -9.84869 -9.49436 -8.47319 -6.07335 -0.85854 -0.16497 0.51789 0.53951 1.31105 1.39862 1.50086 1.62895 1.82865 2.13278 2.39746 2.51742 2.55464 2.81036 2.83715 3.01483 3.08646 3.25534 3.56700 3.85566 3.96033 4.08123 4.10430 4.17061 4.32358 4.33367 4.51230 4.57763 4.59025 4.73247 4.78808 4.85207 4.91372 4.98742 5.14684 5.18782 5.34542 5.52316 5.57458 5.62006 5.71111 5.87452 5.91931 6.05633 6.25087 6.81640 6.94443 7.14528 7.39661 7.70666 8.52101 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003220 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.090167 B = 8693.145117 C = 9140.803401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.210 3.790 3 N -0.517 5.517 4 C 0.353 3.647 5 C -0.075 4.075 6 C -0.083 4.083 7 C -0.131 4.131 8 C -0.092 4.092 9 C -0.130 4.130 10 C -0.079 4.079 11 N -0.513 5.513 12 C 0.177 3.823 13 C -0.232 4.232 14 C 0.498 3.502 15 O -0.603 6.603 16 N -0.424 5.424 17 C -0.321 4.321 18 H 0.092 0.908 19 C 0.003 3.997 20 N -0.899 5.899 21 Si 1.001 2.999 22 H -0.282 1.282 23 H -0.271 1.271 24 H -0.260 1.260 25 C 0.142 3.858 26 C 0.504 3.496 27 O -0.558 6.558 28 O -0.521 6.521 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.198 0.802 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.271 15.170 0.529 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 N -0.231 5.231 4 C 0.090 3.910 5 C -0.077 4.077 6 C -0.103 4.103 7 C -0.149 4.149 8 C -0.110 4.110 9 C -0.148 4.148 10 C -0.099 4.099 11 N -0.227 5.227 12 C 0.009 3.991 13 C -0.239 4.239 14 C 0.287 3.713 15 O -0.489 6.489 16 N -0.141 5.141 17 C -0.448 4.448 18 H 0.109 0.891 19 C -0.197 4.197 20 N -0.541 5.541 21 Si 0.825 3.175 22 H -0.208 1.208 23 H -0.196 1.196 24 H -0.185 1.185 25 C 0.017 3.983 26 C 0.347 3.653 27 O -0.448 6.448 28 O -0.333 6.333 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.215 0.785 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 10.278 15.622 1.094 18.732 hybrid contribution -1.701 -1.855 -0.785 2.636 sum 8.577 13.767 0.309 16.223 Atomic orbital electron populations 1.20721 0.86691 1.03463 1.04455 1.21919 0.98255 0.86513 0.87041 1.68223 1.09288 1.29008 1.16620 1.21996 0.86168 0.93208 0.89640 1.18246 0.93713 0.88240 1.07516 1.21450 1.00801 0.91562 0.96482 1.21444 0.95321 0.97622 1.00537 1.21784 0.93991 0.99579 0.95656 1.21472 1.01642 0.91330 1.00343 1.21478 0.92251 1.00031 0.96136 1.68387 1.40269 0.98033 1.16010 1.23747 0.90148 0.97095 0.88071 1.21751 0.97268 0.96051 1.08868 1.17735 0.85041 0.83371 0.85150 1.90616 1.41769 1.78154 1.38384 1.43473 1.33923 1.16625 1.20119 1.19803 1.27030 0.97338 1.00658 0.89061 1.26008 0.97284 1.02824 0.93543 1.69477 1.40783 1.39680 1.04126 0.84850 0.77859 0.76705 0.78100 1.20804 1.19583 1.18500 1.21224 0.89958 1.02982 0.84134 1.23534 0.86008 0.71381 0.84339 1.90569 1.17937 1.53407 1.82887 1.84444 1.45728 1.76073 1.27014 0.88255 0.88238 0.92393 0.85371 0.82974 0.82341 0.82702 0.84739 0.78500 0.91036 0.88660 0.84167 0.73097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.54 9.65 71.24 0.69 -2.85 16 2 C 0.21 8.25 6.87 43.01 0.30 8.55 16 3 N -0.52 -18.60 9.36 -176.32 -1.65 -20.25 16 4 C 0.35 11.92 7.55 137.40 1.04 12.96 16 5 C -0.08 -2.07 5.88 -20.05 -0.12 -2.19 16 6 C -0.08 -1.96 9.56 22.51 0.22 -1.74 16 7 C -0.13 -2.18 10.03 22.24 0.22 -1.96 16 8 C -0.09 -1.26 10.04 22.32 0.22 -1.03 16 9 C -0.13 -2.07 10.03 22.23 0.22 -1.85 16 10 C -0.08 -1.79 9.56 22.50 0.22 -1.58 16 11 N -0.51 -17.18 9.42 -188.10 -1.77 -18.95 16 12 C 0.18 6.19 8.87 85.15 0.76 6.94 16 13 C -0.23 -9.57 4.99 -19.88 -0.10 -9.67 16 14 C 0.50 24.46 5.93 86.70 0.51 24.97 16 15 O -0.60 -33.33 16.08 -4.09 -0.07 -33.39 16 16 N -0.42 -21.17 2.18 -643.19 -1.40 -22.57 16 17 C -0.32 -17.32 9.30 84.11 0.78 -16.54 16 18 H 0.09 5.19 7.22 -2.91 -0.02 5.17 16 19 C 0.00 0.15 5.26 84.96 0.45 0.60 16 20 N -0.90 -44.14 7.76 21.68 0.17 -43.97 16 21 Si 1.00 41.24 29.55 68.60 2.03 43.27 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 25 C 0.14 6.18 5.17 85.63 0.44 6.63 16 26 C 0.50 22.79 6.03 71.24 0.43 23.22 16 27 O -0.56 -29.42 16.59 21.94 0.36 -29.06 16 28 O -0.52 -19.05 13.42 -51.38 -0.69 -19.74 16 29 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 31 H 0.06 2.53 6.85 -2.39 -0.02 2.51 16 32 H 0.13 3.14 7.50 -2.91 -0.02 3.12 16 33 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.13 3.04 7.50 -2.91 -0.02 3.02 16 37 H 0.20 5.81 7.36 -2.91 -0.02 5.79 16 38 H 0.28 13.09 8.31 -92.70 -0.77 12.32 16 39 H 0.10 3.55 4.19 -2.39 -0.01 3.54 16 40 H 0.14 6.23 6.30 -2.38 -0.02 6.22 16 41 H 0.41 11.55 9.10 -74.06 -0.67 10.87 16 Total: -1.00 -71.49 355.20 3.70 -67.79 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.44 Total: 32.43 kcal Atomic # 6 Polarization: 38.17 SS G_CDS: 6.28 Total: 44.45 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.65 Total: -105.74 kcal Atomic # 8 Polarization: -81.81 SS G_CDS: -0.39 Total: -82.20 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -71.49 3.70 -67.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832991707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.792 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds