Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00226 * 2 1 4 4 H 1.48493 * 109.47610 * 240.00007 * 3 2 1 5 5 H 1.48504 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46998 * 120.00058 * 3 2 1 7 7 C 1.37879 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00360 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99828 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.47389 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53803 * 68.37867 * 10 9 7 12 12 O 1.42093 * 110.54402 * 291.63019 * 10 9 7 13 13 N 1.65599 * 104.45052 * 180.02562 * 10 9 7 14 14 C 1.34775 * 119.99814 * 65.00507 * 13 10 9 15 15 O 1.21581 * 119.99958 * 359.97438 * 14 13 10 16 16 C 1.47707 * 119.99980 * 179.97438 * 14 13 10 17 17 C 1.41508 * 126.51955 * 179.97438 * 16 14 13 18 18 C 1.35362 * 105.50465 * 179.97438 * 17 16 14 19 19 C 1.50697 * 126.38673 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47466 * 144.99673 * 19 18 17 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 C 1.52999 * 109.46961 * 265.00023 * 19 18 17 25 25 N 1.35035 * 107.22557 * 0.22363 * 18 17 16 26 26 H 0.97004 * 124.87702 * 179.77199 * 25 18 17 27 27 N 1.28460 * 110.23540 * 359.61655 * 25 18 17 28 28 H 0.97002 * 119.99878 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46916 * 60.00250 * 9 7 2 30 30 H 1.09003 * 109.47340 * 300.00434 * 9 7 2 31 31 H 0.96994 * 120.00168 * 245.00043 * 13 10 9 32 32 H 1.08003 * 127.24206 * 359.94518 * 17 16 14 33 33 H 1.09002 * 109.47120 * 24.99426 * 19 18 17 34 34 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 35 35 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 36 36 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 37 37 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 38 38 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 40 40 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 41 41 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47486 * 59.99568 * 24 19 18 43 43 H 1.09002 * 109.46716 * 299.99650 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0021 11 8 3.1273 -3.9389 1.2344 12 8 3.1256 -3.9378 -1.2395 13 7 1.4793 -5.2341 -0.0027 14 6 0.6882 -5.5021 -1.0604 15 8 0.6720 -4.7480 -2.0139 16 6 -0.1591 -6.7120 -1.0612 17 6 -1.0367 -7.1248 -2.0917 18 6 -1.5927 -8.2783 -1.6530 19 6 -2.6029 -9.1203 -2.3889 20 6 -2.3502 -10.5991 -2.0883 21 6 -3.3754 -11.4539 -2.8360 22 6 -4.7857 -11.0745 -2.3797 23 6 -5.0383 -9.5958 -2.6802 24 6 -4.0129 -8.7407 -1.9321 25 7 -1.0776 -8.5309 -0.4305 26 1 -1.3047 -9.2969 0.1196 27 7 -0.2412 -7.6128 -0.1024 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 1.4920 -5.8356 0.7582 32 1 -1.2238 -6.6244 -3.0304 33 1 -2.5091 -8.9463 -3.4608 34 1 -2.4439 -10.7731 -1.0164 35 1 -1.3456 -10.8694 -2.4138 36 1 -3.2812 -11.2797 -3.9078 37 1 -3.1956 -12.5074 -2.6214 38 1 -5.5160 -11.6838 -2.9119 39 1 -4.8798 -11.2486 -1.3078 40 1 -4.9441 -9.4216 -3.7521 41 1 -6.0429 -9.3253 -2.3548 42 1 -4.1929 -7.6872 -2.1462 43 1 -4.1066 -8.9148 -0.8601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = -66.800369 kcal Electronic energy + Delta-G solvation = -27161.663317 eV Core-core repulsion = 23141.465148 eV Total energy + Delta-G solvation = -4020.198169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.96359 -39.43479 -38.81044 -36.16698 -35.10677 -34.10101 -33.30186 -32.95536 -32.02211 -31.20280 -29.10169 -28.99808 -24.85350 -23.54606 -23.41008 -23.04840 -21.30830 -20.81284 -20.04066 -19.08760 -17.96679 -17.46087 -17.00474 -16.37809 -16.01473 -15.62550 -15.44574 -14.84120 -14.70448 -14.68691 -14.49551 -14.35142 -14.29401 -14.06768 -13.79102 -12.99571 -12.68892 -12.63589 -12.47971 -12.11673 -11.88835 -11.82720 -11.65818 -11.42308 -11.23269 -11.14196 -11.12973 -10.92968 -10.84585 -10.75416 -10.64015 -10.61514 -10.42286 -10.19381 -9.79988 -9.56117 -9.14486 -9.10575 -8.65461 -6.27932 -4.38946 1.09049 1.38432 1.89667 2.61702 3.20432 3.28286 3.29852 3.31719 3.35641 3.97211 4.13118 4.22778 4.26652 4.29710 4.57008 4.64712 4.68343 4.75963 4.90663 4.93687 4.99706 5.00313 5.06290 5.14344 5.24817 5.28080 5.40335 5.49301 5.51239 5.54695 5.61262 5.64421 5.72792 5.77672 5.86023 5.95471 6.19629 6.64089 6.73530 6.83424 7.07688 7.46690 7.60738 7.78750 7.87176 8.61987 9.27895 10.83874 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.002382 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.415568 B =11754.201435 C =12588.505945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.071 0.929 9 C -0.404 4.404 10 S 2.555 3.445 11 O -0.967 6.967 12 O -0.952 6.952 13 N -1.051 6.051 14 C 0.626 3.374 15 O -0.477 6.477 16 C -0.010 4.010 17 C -0.168 4.168 18 C 0.020 3.980 19 C -0.017 4.017 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.114 4.114 25 N -0.375 5.375 26 H 0.443 0.557 27 N -0.251 5.251 28 H 0.269 0.731 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.429 0.571 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.185 -24.485 -3.212 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.658 3.342 11 O -0.958 6.958 12 O -0.942 6.942 13 N -0.810 5.810 14 C 0.409 3.591 15 O -0.346 6.346 16 C -0.173 4.173 17 C -0.196 4.196 18 C -0.105 4.105 19 C -0.037 4.037 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.152 4.152 25 N -0.090 5.090 26 H 0.288 0.712 27 N -0.088 5.088 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.264 0.736 32 H 0.184 0.816 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.944 -24.088 -2.918 26.618 hybrid contribution -0.671 0.409 0.095 0.792 sum -11.615 -23.679 -2.823 26.525 Atomic orbital electron populations 1.69952 1.06261 1.27797 1.47310 1.24918 0.95032 0.99548 0.93439 0.86400 0.79601 0.81305 0.79450 1.19350 1.20722 1.19439 1.20252 0.92724 0.88466 1.55935 0.91141 1.27608 1.09900 1.09080 1.07505 1.07105 0.77215 0.75809 0.74091 1.93521 1.71055 1.85906 1.45304 1.93528 1.70830 1.85184 1.44642 1.55354 1.55464 1.43795 1.26352 1.16703 0.77504 0.83361 0.81487 1.91011 1.63685 1.47136 1.32732 1.21821 1.03573 0.97468 0.94389 1.21588 0.99823 0.96430 1.01735 1.21357 1.01766 0.98871 0.88529 1.19843 0.91457 0.92573 0.99809 1.21638 0.99883 0.93748 1.00448 1.21509 0.94424 0.99199 1.00411 1.21573 0.96707 0.96363 1.01336 1.21553 0.98782 0.94656 1.00744 1.21639 0.92742 1.00538 1.00234 1.43260 1.30611 1.20624 1.14491 0.71213 1.73535 1.10522 0.99607 1.25092 0.92134 0.88258 0.89612 0.73622 0.81589 0.88187 0.92216 0.91240 0.91488 0.91729 0.91889 0.92025 0.91544 0.91628 0.90879 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.08 2.18 5.46 -17.82 -0.10 2.09 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.23 9.13 -34.44 -0.31 -15.54 16 8 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 9 C -0.40 -10.33 5.64 36.01 0.20 -10.13 16 10 S 2.56 57.79 5.03 -107.50 -0.54 57.25 16 11 O -0.97 -22.92 18.08 -57.54 -1.04 -23.96 16 12 O -0.95 -24.33 17.03 -64.79 -1.10 -25.43 16 13 N -1.05 -18.97 5.60 30.50 0.17 -18.80 16 14 C 0.63 11.61 7.56 -12.39 -0.09 11.52 16 15 O -0.48 -10.42 15.02 -11.85 -0.18 -10.60 16 16 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 17 C -0.17 -2.09 10.73 -39.36 -0.42 -2.51 16 18 C 0.02 0.19 5.92 -82.21 -0.49 -0.30 16 19 C -0.02 -0.10 2.59 -91.78 -0.24 -0.34 16 20 C -0.12 -0.56 4.96 -26.73 -0.13 -0.69 16 21 C -0.12 -0.49 5.92 -26.73 -0.16 -0.65 16 22 C -0.12 -0.51 5.92 -26.73 -0.16 -0.67 16 23 C -0.12 -0.57 5.92 -26.70 -0.16 -0.73 16 24 C -0.11 -0.66 5.19 -26.70 -0.14 -0.80 16 25 N -0.38 -3.36 6.64 33.50 0.22 -3.14 16 26 H 0.44 2.38 8.15 -190.44 -1.55 0.83 16 27 N -0.25 -3.18 11.92 33.42 0.40 -2.78 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.10 2.64 7.19 -51.92 -0.37 2.27 16 30 H 0.09 2.12 8.14 -51.92 -0.42 1.70 16 31 H 0.43 6.33 8.51 -34.47 -0.29 6.04 16 32 H 0.17 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.23 7.44 -51.93 -0.39 -0.16 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -36.74 370.47 -10.77 -47.51 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.22 Total: 2.17 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -2.78 Total: -19.50 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 1.53 Total: -49.45 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -2.32 Total: -59.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 57.79 SS G_CDS: -0.54 Total: 57.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.74 -10.77 -47.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.288 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds