Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00226 * 2 1 4 4 H 1.48493 * 109.47610 * 240.00007 * 3 2 1 5 5 H 1.48504 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46998 * 120.00058 * 3 2 1 7 7 C 1.37879 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00360 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99828 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.47389 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53803 * 68.37867 * 10 9 7 12 12 O 1.42093 * 110.54402 * 291.63019 * 10 9 7 13 13 N 1.65599 * 104.45052 * 180.02562 * 10 9 7 14 14 C 1.34775 * 119.99814 * 65.00507 * 13 10 9 15 15 O 1.21581 * 119.99958 * 359.97438 * 14 13 10 16 16 C 1.47707 * 119.99980 * 179.97438 * 14 13 10 17 17 C 1.41508 * 126.51955 * 179.97438 * 16 14 13 18 18 C 1.35362 * 105.50465 * 179.97438 * 17 16 14 19 19 C 1.50697 * 126.38673 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47466 * 144.99673 * 19 18 17 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 C 1.52999 * 109.46961 * 265.00023 * 19 18 17 25 25 N 1.35035 * 107.22557 * 0.22363 * 18 17 16 26 26 H 0.97004 * 124.87702 * 179.77199 * 25 18 17 27 27 N 1.28460 * 110.23540 * 359.61655 * 25 18 17 28 28 H 0.97002 * 119.99878 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46916 * 60.00250 * 9 7 2 30 30 H 1.09003 * 109.47340 * 300.00434 * 9 7 2 31 31 H 0.96994 * 120.00168 * 245.00043 * 13 10 9 32 32 H 1.08003 * 127.24206 * 359.94518 * 17 16 14 33 33 H 1.09002 * 109.47120 * 24.99426 * 19 18 17 34 34 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 35 35 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 36 36 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 37 37 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 38 38 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 40 40 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 41 41 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47486 * 59.99568 * 24 19 18 43 43 H 1.09002 * 109.46716 * 299.99650 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0021 11 8 3.1273 -3.9389 1.2344 12 8 3.1256 -3.9378 -1.2395 13 7 1.4793 -5.2341 -0.0027 14 6 0.6882 -5.5021 -1.0604 15 8 0.6720 -4.7480 -2.0139 16 6 -0.1591 -6.7120 -1.0612 17 6 -1.0367 -7.1248 -2.0917 18 6 -1.5927 -8.2783 -1.6530 19 6 -2.6029 -9.1203 -2.3889 20 6 -2.3502 -10.5991 -2.0883 21 6 -3.3754 -11.4539 -2.8360 22 6 -4.7857 -11.0745 -2.3797 23 6 -5.0383 -9.5958 -2.6802 24 6 -4.0129 -8.7407 -1.9321 25 7 -1.0776 -8.5309 -0.4305 26 1 -1.3047 -9.2969 0.1196 27 7 -0.2412 -7.6128 -0.1024 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 1.4920 -5.8356 0.7582 32 1 -1.2238 -6.6244 -3.0304 33 1 -2.5091 -8.9463 -3.4608 34 1 -2.4439 -10.7731 -1.0164 35 1 -1.3456 -10.8694 -2.4138 36 1 -3.2812 -11.2797 -3.9078 37 1 -3.1956 -12.5074 -2.6214 38 1 -5.5160 -11.6838 -2.9119 39 1 -4.8798 -11.2486 -1.3078 40 1 -4.9441 -9.4216 -3.7521 41 1 -6.0429 -9.3253 -2.3548 42 1 -4.1929 -7.6872 -2.1462 43 1 -4.1066 -8.9148 -0.8601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = -94.065101 kcal Electronic energy + Delta-G solvation = -27162.845605 eV Core-core repulsion = 23141.465148 eV Total energy + Delta-G solvation = -4021.380457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.90946 -40.92795 -39.29952 -38.11427 -37.07723 -35.68610 -35.41826 -33.62303 -33.00158 -31.60333 -31.10925 -29.81237 -26.17593 -25.53105 -24.08046 -23.45934 -22.20708 -21.93151 -20.86308 -20.56074 -19.27635 -18.85304 -18.51045 -18.16308 -17.56057 -16.94866 -16.58542 -16.23018 -16.08381 -15.85155 -15.74581 -15.25458 -15.01957 -14.97478 -14.61339 -14.49756 -14.14370 -13.74047 -13.49323 -13.44586 -13.22425 -13.14724 -13.11962 -13.06557 -12.71582 -12.54936 -12.41710 -12.10728 -12.01928 -11.93478 -11.86828 -11.71299 -11.36365 -11.16235 -11.09447 -11.04145 -10.78179 -10.56118 -10.00492 -8.41795 -6.61496 -0.77946 0.15552 0.98561 1.37966 1.43084 1.49422 1.51343 1.87067 1.96966 2.31099 2.73463 2.91798 2.97580 3.31186 3.41736 3.66312 3.77630 3.87101 4.07039 4.17370 4.25910 4.36288 4.50963 4.54861 4.59586 4.61580 4.64323 4.70876 4.75150 4.78637 5.04268 5.16462 5.19768 5.22068 5.27592 5.29314 5.29737 5.41616 5.45970 5.58171 5.60181 5.68870 5.99223 6.33460 6.48034 6.74401 7.10041 8.71196 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.002382 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.415568 B =11754.201435 C =12588.505945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.418 4.418 10 S 2.600 3.400 11 O -0.975 6.975 12 O -0.980 6.980 13 N -1.036 6.036 14 C 0.624 3.376 15 O -0.517 6.517 16 C -0.041 4.041 17 C -0.188 4.188 18 C 0.047 3.953 19 C -0.013 4.013 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.112 4.112 25 N -0.350 5.350 26 H 0.462 0.538 27 N -0.252 5.252 28 H 0.275 0.725 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.445 0.555 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -26.366 -2.761 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.607 4.607 8 H 0.088 0.912 9 C -0.553 4.553 10 S 2.701 3.299 11 O -0.966 6.966 12 O -0.970 6.970 13 N -0.800 5.800 14 C 0.410 3.590 15 O -0.389 6.389 16 C -0.201 4.201 17 C -0.217 4.217 18 C -0.079 4.079 19 C -0.033 4.033 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.150 4.150 25 N -0.068 5.068 26 H 0.311 0.689 27 N -0.090 5.090 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.284 0.716 32 H 0.184 0.816 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.623 -25.990 -2.427 28.574 hybrid contribution -0.578 0.810 -0.035 0.995 sum -12.200 -25.180 -2.462 28.088 Atomic orbital electron populations 1.70042 1.07689 1.29073 1.47678 1.25906 0.96022 1.03322 0.92657 0.85435 0.78646 0.76903 0.79935 1.18815 1.19282 1.18211 1.20704 0.93197 0.90211 1.56637 0.91158 1.27645 1.10633 1.10525 1.06545 1.05495 0.76085 0.75293 0.73037 1.93499 1.71276 1.86246 1.45572 1.93487 1.71588 1.85794 1.46174 1.54849 1.55101 1.42757 1.27303 1.17199 0.77166 0.84058 0.80531 1.90983 1.64957 1.48801 1.34116 1.21362 1.04969 0.97305 0.96464 1.21756 1.00309 0.97844 1.01748 1.21665 1.00689 0.97628 0.87932 1.19962 0.90556 0.93145 0.99633 1.21649 1.00101 0.92301 1.01483 1.21500 0.94069 0.99506 1.00291 1.21569 0.96907 0.95743 1.01619 1.21538 0.98420 0.94995 1.00600 1.21620 0.92709 1.00054 1.00644 1.43351 1.28854 1.20085 1.14535 0.68879 1.73459 1.11265 0.99791 1.24534 0.91605 0.90123 0.89598 0.71605 0.81590 0.87714 0.90854 0.91270 0.91572 0.90909 0.91429 0.91712 0.91512 0.91514 0.92169 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 13.29 21.45 0.28 -53.39 16 2 C 0.02 1.39 5.46 84.66 0.46 1.86 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.57 -33.18 9.13 25.60 0.23 -32.94 16 8 H 0.07 3.97 7.71 -2.91 -0.02 3.95 16 9 C -0.42 -22.18 5.64 71.24 0.40 -21.78 16 10 S 2.60 119.81 5.03 -56.49 -0.28 119.52 16 11 O -0.98 -46.15 18.08 -127.65 -2.31 -48.46 16 12 O -0.98 -51.18 17.03 -120.71 -2.06 -53.24 16 13 N -1.04 -37.87 5.60 -175.69 -0.98 -38.85 16 14 C 0.62 23.74 7.56 86.75 0.66 24.39 16 15 O -0.52 -23.60 15.02 12.42 0.19 -23.41 16 16 C -0.04 -1.22 7.13 42.46 0.30 -0.92 16 17 C -0.19 -4.61 10.73 22.41 0.24 -4.37 16 18 C 0.05 0.78 5.92 41.40 0.24 1.02 16 19 C -0.01 -0.13 2.59 -11.54 -0.03 -0.16 16 20 C -0.12 -0.74 4.96 30.59 0.15 -0.59 16 21 C -0.12 -0.64 5.92 30.60 0.18 -0.45 16 22 C -0.12 -0.70 5.92 30.59 0.18 -0.52 16 23 C -0.12 -0.89 5.92 30.61 0.18 -0.71 16 24 C -0.11 -1.09 5.19 30.61 0.16 -0.93 16 25 N -0.35 -5.44 6.64 -47.93 -0.32 -5.76 16 26 H 0.46 3.42 8.15 -219.99 -1.79 1.62 16 27 N -0.25 -6.02 11.92 -48.17 -0.57 -6.59 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.08 4.53 7.19 -2.39 -0.02 4.52 16 30 H 0.09 4.43 8.14 -2.39 -0.02 4.41 16 31 H 0.45 12.95 8.51 -96.75 -0.82 12.13 16 32 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.28 7.44 -2.39 -0.02 0.26 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -80.09 370.47 -2.22 -82.31 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -1.56 Total: 18.09 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.37 Total: -36.11 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -1.59 Total: -104.59 kcal Atomic # 8 Polarization: -120.93 SS G_CDS: -4.18 Total: -125.11 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 119.81 SS G_CDS: -0.28 Total: 119.52 kcal Total: -80.09 -2.22 -82.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.751 kcal (2) G-P(sol) polarization free energy of solvation -80.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds