Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38460 * 119.83765 * 2 1 4 4 C 1.37826 * 120.24495 * 179.97438 * 3 2 1 5 5 C 1.39737 * 119.92022 * 0.02562 * 4 3 2 6 6 C 1.47579 * 120.15923 * 179.97438 * 5 4 3 7 7 O 1.21488 * 119.99499 * 180.02562 * 6 5 4 8 8 O 1.34728 * 119.99806 * 0.02562 * 6 5 4 9 9 C 1.45206 * 116.99733 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46660 * 329.99499 * 9 8 6 11 11 C 1.52997 * 109.47147 * 89.99735 * 9 8 6 12 12 C 1.50697 * 109.47064 * 210.00136 * 9 8 6 13 13 O 1.21285 * 120.00040 * 354.99791 * 12 9 8 14 14 N 1.34778 * 119.99902 * 174.99933 * 12 9 8 15 15 C 1.46493 * 120.00087 * 359.97438 * 14 12 9 16 16 C 1.46505 * 119.99823 * 179.97438 * 14 12 9 17 17 C 1.50697 * 109.46900 * 89.99912 * 16 14 12 18 18 H 1.07995 * 120.00161 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00017 * 179.97438 * 17 16 14 20 20 N 1.31522 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46851 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46994 * 119.99941 * 21 19 17 24 24 H 1.48495 * 109.47157 * 240.00302 * 21 19 17 25 25 C 1.39816 * 119.67946 * 0.28032 * 5 4 3 26 26 F 1.35101 * 120.12366 * 179.72205 * 25 5 4 27 27 C 1.38379 * 119.83331 * 180.02562 * 2 1 3 28 28 F 1.35105 * 119.96595 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47628 * 89.99179 * 1 2 3 30 30 H 1.08993 * 109.47418 * 210.00039 * 1 2 3 31 31 H 1.09010 * 109.46893 * 329.99903 * 1 2 3 32 32 H 1.08001 * 119.87994 * 0.02562 * 3 2 1 33 33 H 1.08008 * 120.03680 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.46832 * 60.00119 * 11 9 8 36 36 H 1.09004 * 109.47261 * 300.00100 * 11 9 8 37 37 H 1.09002 * 109.47115 * 89.99747 * 15 14 12 38 38 H 1.08998 * 109.47192 * 209.99907 * 15 14 12 39 39 H 1.08999 * 109.47064 * 329.99847 * 15 14 12 40 40 H 1.08997 * 109.46961 * 210.00478 * 16 14 12 41 41 H 1.09005 * 109.46984 * 329.99937 * 16 14 12 42 42 H 0.97003 * 119.99529 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2011 0.0000 4 6 3.5741 1.2108 0.0005 5 6 4.2797 0.0047 0.0005 6 6 5.7555 0.0090 0.0005 7 8 6.3659 -1.0413 0.0001 8 8 6.4256 1.1778 0.0011 9 6 7.8759 1.1061 0.0016 10 1 8.1946 0.1991 0.5154 11 6 8.3859 1.0811 -1.4407 12 6 8.4382 2.3100 0.7125 13 8 7.6962 3.1906 1.0934 14 7 9.7654 2.4082 0.9250 15 6 10.6615 1.3442 0.4655 16 6 10.3121 3.5789 1.6157 17 6 10.3491 3.3151 3.0989 18 1 10.0007 2.3699 3.4882 19 6 10.8286 4.2802 3.9590 20 7 11.2534 5.4311 3.4848 21 14 10.8752 3.9531 5.7975 22 1 10.3459 2.5930 6.0718 23 1 12.2761 4.0454 6.2814 24 1 10.0411 4.9605 6.5008 25 6 3.5808 -1.2062 -0.0060 26 9 4.2539 -2.3776 -0.0117 27 6 2.1954 -1.2004 -0.0005 28 9 1.5158 -2.3681 -0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.6513 2.1337 0.0004 33 1 4.1081 2.1497 0.0009 34 1 9.4746 1.0277 -1.4403 35 1 8.0671 1.9881 -1.9544 36 1 7.9792 0.2102 -1.9549 37 1 10.9925 1.5614 -0.5501 38 1 11.5271 1.2879 1.1255 39 1 10.1316 0.3918 0.4790 40 1 11.3223 3.7740 1.2559 41 1 9.6817 4.4455 1.4163 42 1 11.5904 6.1102 4.0899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869683648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -196.531680 kcal Electronic energy + Delta-G solvation = -29437.797818 eV Core-core repulsion = 24825.840939 eV Total energy + Delta-G solvation = -4611.956879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.70919 -49.78386 -42.06746 -40.73268 -39.86917 -37.74431 -36.71667 -34.93594 -34.23512 -32.94963 -31.59770 -29.66765 -28.99694 -27.67575 -26.11453 -25.03246 -23.98537 -23.75823 -22.26107 -20.49083 -19.86269 -18.75339 -18.67031 -18.54886 -18.01809 -17.84310 -17.64793 -17.31729 -17.10629 -16.72148 -16.40997 -16.18771 -15.86526 -15.66641 -15.38944 -14.88540 -14.81965 -14.38720 -14.35726 -14.22776 -14.16427 -13.73815 -13.56197 -13.41077 -13.33589 -13.09326 -12.90507 -12.84999 -12.80759 -12.75985 -12.63914 -12.54003 -12.23918 -12.02794 -11.84560 -11.70220 -10.66062 -10.65526 -10.13773 -10.00289 -9.53638 -8.24993 -6.39168 -0.84888 -0.28511 0.98921 1.13540 1.35886 1.37906 1.49395 1.59141 2.19647 2.22481 2.38927 2.50631 3.05133 3.09234 3.17942 3.34975 3.45410 3.53059 3.70472 3.78690 3.80641 4.19990 4.29307 4.32217 4.50306 4.58332 4.65726 4.71638 4.75660 4.79871 4.84311 4.89712 4.93862 5.06917 5.07988 5.10917 5.15286 5.20417 5.49684 5.51477 5.76450 6.02381 6.33687 6.57567 6.69468 7.17657 7.34200 8.82486 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.002567 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.398909 B =10904.103418 C =11557.385484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.098 4.098 4 C -0.030 4.030 5 C -0.161 4.161 6 C 0.508 3.492 7 O -0.518 6.518 8 O -0.328 6.328 9 C 0.079 3.921 10 H 0.113 0.887 11 C -0.162 4.162 12 C 0.503 3.497 13 O -0.574 6.574 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.260 3.740 17 C -0.546 4.546 18 H 0.050 0.950 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.271 1.271 23 H -0.268 1.268 24 H -0.280 1.280 25 C 0.114 3.886 26 F -0.124 7.124 27 C 0.040 3.960 28 F -0.127 7.127 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.193 0.807 33 H 0.163 0.837 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.005 0.995 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 -11.477 -12.000 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.040 4.040 3 C -0.116 4.116 4 C -0.048 4.048 5 C -0.164 4.164 6 C 0.354 3.646 7 O -0.408 6.408 8 O -0.243 6.243 9 C 0.020 3.980 10 H 0.131 0.869 11 C -0.219 4.219 12 C 0.289 3.711 13 O -0.453 6.453 14 N -0.331 5.331 15 C -0.074 4.074 16 C 0.139 3.861 17 C -0.584 4.584 18 H 0.068 0.932 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.790 3.210 22 H -0.195 1.195 23 H -0.193 1.193 24 H -0.205 1.205 25 C 0.093 3.907 26 F -0.102 7.102 27 C 0.020 3.980 28 F -0.106 7.106 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.210 0.790 33 H 0.181 0.819 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.023 0.977 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.303 -11.245 -11.760 25.246 hybrid contribution 0.757 -0.629 1.143 1.508 sum -18.546 -11.874 -10.617 24.448 Atomic orbital electron populations 1.21039 0.86171 1.05503 1.05087 1.20597 0.99549 0.89837 0.94024 1.21487 0.92480 0.99124 0.98502 1.21782 0.95391 0.96624 0.91029 1.18954 0.89100 0.94125 1.14176 1.21165 0.89142 0.81722 0.72611 1.90863 1.70242 1.33068 1.46602 1.86615 1.21243 1.33026 1.83438 1.22621 0.77067 0.97668 1.00598 0.86928 1.22303 1.04378 1.04357 0.90868 1.20491 0.82896 0.87722 0.79974 1.90658 1.58911 1.42808 1.52930 1.48042 1.05761 1.23140 1.56141 1.22199 0.94789 0.89432 1.01004 1.18867 0.93220 0.83036 0.90935 1.21704 1.42388 1.01380 0.92970 0.93185 1.25801 0.94574 0.94542 1.03913 1.70042 1.42947 1.06483 1.36963 0.85399 0.78264 0.78183 0.79152 1.19545 1.19293 1.20535 1.17857 0.89136 0.81068 1.02634 1.91570 1.80348 1.45124 1.93168 1.17404 0.86690 0.83571 1.10367 1.91522 1.78977 1.45739 1.94318 0.87958 0.90723 0.87335 0.78987 0.81900 0.87197 0.90788 0.89663 0.89523 0.90639 0.89693 0.94776 0.97735 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.82 71.24 0.70 -0.01 16 2 C -0.04 -0.49 5.89 -19.78 -0.12 -0.61 16 3 C -0.10 -1.10 9.67 22.22 0.21 -0.88 16 4 C -0.03 -0.55 9.61 22.53 0.22 -0.33 16 5 C -0.16 -4.08 5.88 -20.07 -0.12 -4.20 16 6 C 0.51 15.94 7.87 70.29 0.55 16.49 16 7 O -0.52 -18.21 14.60 19.87 0.29 -17.92 16 8 O -0.33 -10.90 8.67 -50.00 -0.43 -11.34 16 9 C 0.08 2.56 2.17 29.85 0.06 2.62 16 10 H 0.11 3.55 6.15 -2.39 -0.01 3.54 16 11 C -0.16 -3.86 9.28 71.98 0.67 -3.19 16 12 C 0.50 21.46 7.10 87.66 0.62 22.08 16 13 O -0.57 -30.06 16.09 15.70 0.25 -29.81 16 14 N -0.60 -25.18 2.86 -851.14 -2.43 -27.61 16 15 C 0.07 1.96 8.92 127.77 1.14 3.10 16 16 C 0.26 13.78 5.16 85.63 0.44 14.22 16 17 C -0.55 -31.35 9.39 25.60 0.24 -31.11 16 18 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.92 -55.09 13.29 21.45 0.28 -54.81 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 C 0.11 2.89 7.29 22.72 0.17 3.05 16 26 F -0.12 -3.79 15.46 44.97 0.70 -3.09 16 27 C 0.04 0.79 7.24 22.38 0.16 0.95 16 28 F -0.13 -2.64 16.37 44.97 0.74 -1.91 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.54 7.62 -2.39 -0.02 0.52 16 31 H 0.11 0.16 8.08 -2.38 -0.02 0.14 16 32 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.16 2.96 7.61 -2.91 -0.02 2.94 16 34 H 0.11 2.16 5.12 -2.39 -0.01 2.15 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.09 1.94 7.02 -2.39 -0.02 1.92 16 38 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 39 H 0.08 2.04 6.08 -2.39 -0.01 2.03 16 40 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 41 H 0.00 0.27 7.42 -2.38 -0.02 0.26 16 42 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -80.03 368.79 7.91 -72.12 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.07 Total: 4.22 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 5.42 Total: 23.28 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.15 Total: -82.42 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: 0.11 Total: -59.06 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 1.43 Total: -5.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -80.03 7.91 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869683648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.411 kcal (2) G-P(sol) polarization free energy of solvation -80.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds