Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34235 * 117.00141 * 2 1 4 4 O 1.20825 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99963 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46762 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46939 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00241 * 270.00114 * 7 6 5 9 9 H 1.08000 * 120.00227 * 143.03635 * 8 7 6 10 10 C 1.38954 * 119.99878 * 323.03094 * 8 7 6 11 11 N 1.31407 * 119.99873 * 339.61532 * 10 8 7 12 12 Si 1.86798 * 119.99908 * 159.61653 * 10 8 7 13 13 H 1.48500 * 109.47215 * 90.00025 * 12 10 8 14 14 H 1.48498 * 109.47093 * 210.00175 * 12 10 8 15 15 H 1.48502 * 109.47097 * 330.00096 * 12 10 8 16 16 C 1.34777 * 119.99839 * 89.99787 * 7 6 5 17 17 O 1.21294 * 119.99819 * 5.30233 * 16 7 6 18 18 C 1.50699 * 120.00133 * 185.29992 * 16 7 6 19 19 C 1.50697 * 109.47220 * 185.35299 * 18 16 7 20 20 C 1.38206 * 120.00230 * 100.00373 * 19 18 16 21 21 C 1.38430 * 120.00515 * 180.02562 * 20 19 18 22 22 F 1.35092 * 120.00077 * 179.97438 * 21 20 19 23 23 C 1.38476 * 119.99515 * 359.97438 * 21 20 19 24 24 C 1.50698 * 119.99384 * 180.02562 * 23 21 20 25 25 C 1.38155 * 120.00189 * 0.02562 * 23 21 20 26 26 C 1.38434 * 120.00071 * 279.99924 * 19 18 16 27 27 F 1.35092 * 119.99935 * 0.02562 * 26 19 18 28 28 H 1.09006 * 109.46779 * 60.00023 * 1 2 3 29 29 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47198 * 300.00510 * 1 2 3 31 31 H 1.08991 * 109.47386 * 60.00078 * 5 3 2 32 32 H 1.09001 * 109.46934 * 299.99283 * 5 3 2 33 33 H 1.09002 * 109.47635 * 59.99869 * 6 5 3 34 34 H 1.09002 * 109.47395 * 299.99680 * 6 5 3 35 35 H 0.97005 * 120.00003 * 185.27201 * 11 10 8 36 36 H 1.09001 * 109.47102 * 65.35459 * 18 16 7 37 37 H 1.09000 * 109.47244 * 305.35181 * 18 16 7 38 38 H 1.08006 * 119.99638 * 0.03919 * 20 19 18 39 39 H 1.08999 * 109.47271 * 270.01553 * 24 23 21 40 40 H 1.08996 * 109.47596 * 30.02080 * 24 23 21 41 41 H 1.09005 * 109.46923 * 150.02621 * 24 23 21 42 42 H 1.08000 * 119.99859 * 179.70554 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8187 0.0023 8 6 6.1467 2.8545 1.1901 9 1 7.0920 2.3408 1.2848 10 6 5.6234 3.5516 2.2722 11 7 4.7195 4.4853 2.0772 12 14 6.2049 3.1616 4.0040 13 1 7.3738 4.0147 4.3375 14 1 5.1064 3.4287 4.9669 15 1 6.5968 1.7315 4.0843 16 6 6.1370 2.8541 -1.1644 17 8 5.5309 2.9196 -2.2130 18 6 7.6434 2.8123 -1.1660 19 6 8.1495 2.9963 -2.5735 20 6 8.6098 4.2322 -2.9864 21 6 9.0742 4.4014 -4.2795 22 9 9.5237 5.6097 -4.6831 23 6 9.0780 3.3319 -5.1591 24 6 9.5841 3.5160 -6.5666 25 6 8.6178 2.0964 -4.7465 26 6 8.1534 1.9271 -3.4529 27 9 7.7030 0.7191 -3.0496 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9564 0.7806 -0.8891 32 1 3.9556 0.7810 0.8909 33 1 3.6100 3.2360 0.8910 34 1 3.6107 3.2364 -0.8889 35 1 4.4102 5.0241 2.8222 36 1 7.9806 1.8497 -0.7816 37 1 8.0297 3.6117 -0.5337 38 1 8.6075 5.0662 -2.3001 39 1 8.7583 3.8107 -7.2141 40 1 10.3501 4.2913 -6.5789 41 1 10.0100 2.5787 -6.9250 42 1 8.6164 1.2635 -5.4340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871345270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -204.989424 kcal Electronic energy + Delta-G solvation = -29747.499182 eV Core-core repulsion = 25135.175548 eV Total energy + Delta-G solvation = -4612.323634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.94286 -49.89309 -41.59364 -40.75948 -39.70149 -37.68514 -36.85356 -34.82394 -33.82799 -32.63895 -31.15256 -30.61401 -28.71800 -26.95957 -26.70644 -24.73006 -24.06051 -22.44032 -21.73734 -21.02215 -19.15087 -18.53525 -18.39182 -18.16009 -18.02970 -17.72072 -17.62624 -17.46712 -16.86564 -16.37751 -16.30008 -15.95921 -15.74621 -15.28467 -15.22989 -15.08536 -14.64531 -14.30026 -14.18466 -14.10754 -13.95801 -13.91323 -13.74517 -13.56429 -13.16838 -12.92225 -12.83992 -12.78788 -12.65631 -12.52540 -12.38574 -12.11122 -12.01751 -11.89734 -11.80000 -11.63632 -11.09045 -10.50321 -9.92900 -9.52837 -9.38943 -8.29339 -6.07946 -0.04767 0.04173 1.10260 1.43827 1.52345 1.61823 1.64403 1.99715 2.28073 2.36321 2.97301 3.08068 3.18290 3.23087 3.54036 3.66121 3.81635 3.88476 4.07743 4.12934 4.22030 4.29349 4.29835 4.45401 4.49244 4.54643 4.57786 4.62541 4.67762 4.77671 4.80850 4.87983 4.98777 5.02048 5.19881 5.21308 5.23330 5.24719 5.37942 5.54911 5.83131 5.98085 6.39232 6.67360 7.11323 7.53298 7.97548 8.73334 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.003570 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.556274 B = 7841.650980 C = 9575.803820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.113 4.113 6 C 0.130 3.870 7 N -0.448 5.448 8 C -0.359 4.359 9 H 0.111 0.889 10 C 0.005 3.995 11 N -0.894 5.894 12 Si 0.982 3.018 13 H -0.270 1.270 14 H -0.290 1.290 15 H -0.253 1.253 16 C 0.467 3.533 17 O -0.626 6.626 18 C -0.077 4.077 19 C -0.081 4.081 20 C -0.123 4.123 21 C 0.074 3.926 22 F -0.137 7.137 23 C -0.093 4.093 24 C -0.110 4.110 25 C -0.124 4.124 26 C 0.093 3.907 27 F -0.141 7.141 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.272 0.728 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.146 0.854 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.334 -7.725 -7.838 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.006 3.994 7 N -0.166 5.166 8 C -0.486 4.486 9 H 0.128 0.872 10 C -0.199 4.199 11 N -0.531 5.531 12 Si 0.805 3.195 13 H -0.195 1.195 14 H -0.216 1.216 15 H -0.176 1.176 16 C 0.257 3.743 17 O -0.514 6.514 18 C -0.117 4.117 19 C -0.082 4.082 20 C -0.142 4.142 21 C 0.055 3.945 22 F -0.116 7.116 23 C -0.094 4.094 24 C -0.166 4.166 25 C -0.143 4.143 26 C 0.074 3.926 27 F -0.120 7.120 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.164 0.836 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.629 -7.316 -8.207 12.352 hybrid contribution -0.533 0.482 1.175 1.377 sum 5.096 -6.834 -7.032 11.051 Atomic orbital electron populations 1.23588 0.74755 1.05910 1.02435 1.86507 1.25177 1.32295 1.83846 1.23836 0.92116 0.81296 0.71045 1.90642 1.67847 1.37514 1.46720 1.21656 0.86808 1.00688 1.06061 1.20950 0.82599 0.93093 1.02800 1.43567 1.04429 1.63283 1.05288 1.19842 1.07578 1.33597 0.87609 0.87183 1.26273 0.96195 0.93412 1.03985 1.69973 1.31054 1.18257 1.33795 0.85098 0.77694 0.79820 0.76871 1.19479 1.21556 1.17614 1.20895 0.90429 0.79412 0.83524 1.90533 1.71277 1.56610 1.32963 1.20327 0.92108 1.05933 0.93310 1.19433 0.99678 0.92813 0.96308 1.20980 0.99989 0.97486 0.95752 1.17532 1.02145 0.81378 0.93435 1.91461 1.86937 1.42327 1.90854 1.20027 1.00086 0.91124 0.98188 1.20826 1.01864 1.04720 0.89207 1.21084 1.00327 0.98996 0.93873 1.17733 0.99858 0.80719 0.94310 1.91458 1.87021 1.42345 1.91170 0.92190 0.84311 0.92091 0.88067 0.86218 0.88631 0.94764 0.91836 0.87224 0.87057 0.83615 0.89715 0.90501 0.88344 0.81036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.51 10.57 -51.47 -0.54 -12.06 16 3 C 0.47 18.51 7.96 71.24 0.57 19.08 16 4 O -0.54 -24.32 15.73 21.97 0.35 -23.98 16 5 C -0.11 -4.59 6.14 29.85 0.18 -4.41 16 6 C 0.13 6.45 4.33 86.38 0.37 6.83 16 7 N -0.45 -21.94 2.53 -635.52 -1.60 -23.55 16 8 C -0.36 -16.94 8.54 84.04 0.72 -16.22 16 9 H 0.11 4.70 7.22 -2.91 -0.02 4.68 16 10 C 0.00 0.23 4.99 84.93 0.42 0.66 16 11 N -0.89 -47.42 11.35 21.66 0.25 -47.17 16 12 Si 0.98 37.45 29.60 68.60 2.03 39.48 16 13 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 14 H -0.29 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 16 C 0.47 22.21 7.60 87.66 0.67 22.88 16 17 O -0.63 -33.25 15.44 -3.07 -0.05 -33.30 16 18 C -0.08 -2.93 4.17 29.10 0.12 -2.81 16 19 C -0.08 -2.83 4.48 -19.83 -0.09 -2.91 16 20 C -0.12 -3.95 9.65 22.31 0.22 -3.74 16 21 C 0.07 2.13 7.24 22.37 0.16 2.29 16 22 F -0.14 -3.81 16.48 44.97 0.74 -3.07 16 23 C -0.09 -2.26 5.88 -19.83 -0.12 -2.38 16 24 C -0.11 -1.77 9.83 71.24 0.70 -1.07 16 25 C -0.12 -3.17 9.68 22.31 0.22 -2.95 16 26 C 0.09 3.05 7.03 22.37 0.16 3.21 16 27 F -0.14 -4.92 16.66 44.97 0.75 -4.17 16 28 H 0.06 1.41 8.13 -2.38 -0.02 1.40 16 29 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 32 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 33 H 0.10 5.20 5.39 -2.39 -0.01 5.19 16 34 H 0.03 1.87 7.31 -2.39 -0.02 1.85 16 35 H 0.27 13.73 8.32 -92.70 -0.77 12.96 16 36 H 0.11 3.78 7.83 -2.39 -0.02 3.76 16 37 H 0.11 4.03 7.72 -2.39 -0.02 4.01 16 38 H 0.15 4.44 8.04 -2.91 -0.02 4.42 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.18 7.64 -2.39 -0.02 1.17 16 41 H 0.10 1.11 8.09 -2.38 -0.02 1.09 16 42 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -67.48 372.19 8.47 -59.01 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 1.06 Total: 28.56 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.50 Total: 20.25 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -1.36 Total: -70.72 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -0.25 Total: -69.33 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 1.49 Total: -7.24 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -67.48 8.47 -59.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.984 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds