Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47052 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46994 * 119.99800 * 3 2 1 6 6 H 1.48498 * 109.46721 * 240.00152 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.27708 * 2 1 3 8 8 H 1.07994 * 120.00207 * 152.17643 * 7 2 1 9 9 C 1.50707 * 119.99980 * 332.17027 * 7 2 1 10 10 H 1.09003 * 109.46703 * 54.17435 * 9 7 2 11 11 N 1.46498 * 109.47297 * 174.17224 * 9 7 2 12 12 C 1.34767 * 120.00039 * 205.00196 * 11 9 7 13 13 O 1.21585 * 120.00229 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99941 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00083 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47183 * 179.97438 * 15 14 12 17 17 N 1.46907 * 109.47263 * 179.97438 * 16 15 14 18 18 C 1.46468 * 110.99560 * 295.98122 * 17 16 15 19 19 C 1.53248 * 109.85611 * 162.23444 * 18 17 16 20 20 S 1.81907 * 108.50599 * 62.00486 * 19 18 17 21 21 C 1.81897 * 101.91090 * 308.69140 * 20 19 18 22 22 C 1.46464 * 111.00153 * 169.99950 * 17 16 15 23 23 C 1.53002 * 109.47310 * 294.17834 * 9 7 2 24 24 F 1.39904 * 109.47165 * 56.80993 * 23 9 7 25 25 F 1.39898 * 109.47073 * 176.81188 * 23 9 7 26 26 F 1.39898 * 109.46934 * 296.81032 * 23 9 7 27 27 H 0.96997 * 120.00172 * 174.46880 * 1 2 3 28 28 H 0.97003 * 119.99743 * 25.00739 * 11 9 7 29 29 H 0.96998 * 119.99939 * 359.97438 * 14 12 11 30 30 H 1.08997 * 109.47234 * 299.99502 * 15 14 12 31 31 H 1.08997 * 109.47408 * 59.99684 * 15 14 12 32 32 H 1.09003 * 109.47303 * 299.99977 * 16 15 14 33 33 H 1.08999 * 109.47478 * 59.99607 * 16 15 14 34 34 H 1.09004 * 109.40498 * 282.34868 * 18 17 16 35 35 H 1.08996 * 109.40953 * 42.11502 * 18 17 16 36 36 H 1.08997 * 109.63133 * 302.29682 * 19 18 17 37 37 H 1.09002 * 109.79060 * 181.79798 * 19 18 17 38 38 H 1.09006 * 109.63267 * 291.60264 * 21 20 19 39 39 H 1.08999 * 109.79722 * 171.11178 * 21 20 19 40 40 H 1.09005 * 109.40368 * 317.88725 * 22 17 16 41 41 H 1.09001 * 109.40626 * 77.64070 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 2.9908 -1.2460 -0.4426 9 6 1.3818 -2.4266 0.5976 10 1 0.4039 -2.5972 0.1471 11 7 2.2444 -3.5834 0.3447 12 6 1.7181 -4.8238 0.3194 13 8 0.5272 -4.9828 0.5060 14 7 2.5118 -5.8880 0.0872 15 6 1.9396 -7.2363 0.0592 16 6 3.0465 -8.2544 -0.2222 17 7 2.4729 -9.6065 -0.2498 18 6 1.9299 -9.9730 1.0603 19 6 0.9681 -11.1569 0.9124 20 16 1.8994 -12.5804 0.2679 21 6 2.7282 -11.8611 -1.1827 22 6 3.4476 -10.5803 -0.7465 23 6 1.2209 -2.2304 2.1064 24 9 0.4571 -1.0836 2.3488 25 9 0.5769 -3.3444 2.6555 26 9 2.4818 -2.0839 2.6946 27 1 -0.4850 -0.8361 -0.0810 28 1 3.1945 -3.4565 0.1955 29 1 3.4618 -5.7611 -0.0620 30 1 1.4799 -7.4560 1.0227 31 1 1.1850 -7.2946 -0.7252 32 1 3.5060 -8.0345 -1.1859 33 1 3.8015 -8.1963 0.5618 34 1 2.7470 -10.2512 1.7260 35 1 1.3948 -9.1220 1.4816 36 1 0.1704 -10.8959 0.2171 37 1 0.5403 -11.4083 1.8830 38 1 1.9881 -11.6232 -1.9469 39 1 3.4529 -12.5700 -1.5831 40 1 3.9812 -10.1567 -1.5974 41 1 4.1593 -10.8162 0.0447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932921209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -177.271486 kcal Electronic energy + Delta-G solvation = -28287.903782 eV Core-core repulsion = 23721.058485 eV Total energy + Delta-G solvation = -4566.845296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.113 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.75407 -46.30618 -46.20842 -39.64821 -38.69632 -35.32614 -34.43358 -32.74942 -32.01803 -31.32737 -28.57756 -26.92454 -24.46334 -24.16119 -22.84501 -21.71702 -21.19121 -20.41250 -18.54531 -17.51386 -17.40241 -17.10069 -17.02783 -16.51659 -16.06306 -15.73878 -15.46288 -14.95013 -14.65448 -14.30424 -14.20090 -13.92097 -13.82299 -13.50415 -13.34388 -13.22260 -12.99040 -12.84605 -12.73299 -12.55956 -12.48738 -12.43714 -12.38911 -12.12326 -11.87667 -11.69692 -11.30523 -11.09585 -10.99822 -10.77861 -10.22168 -10.07196 -9.74549 -9.56804 -8.93336 -8.89519 -8.45958 -8.34071 -8.04507 -6.80533 -4.51379 1.42086 2.15586 2.81726 3.29413 3.37048 3.48425 3.54355 3.62865 4.19587 4.30756 4.35682 4.39375 4.56892 4.66235 4.71465 4.76658 4.86958 4.89795 4.91642 4.99740 5.14342 5.20221 5.35256 5.40169 5.45298 5.53675 5.58503 5.71294 5.75849 5.84693 6.43311 6.54565 6.56953 6.67408 7.02248 7.16242 7.52069 8.09018 8.37905 8.50674 9.03616 9.17598 10.54497 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002244 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.342814 B =12474.865830 C =12907.755706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.052 3.948 3 Si 1.060 2.940 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.650 4.650 8 H 0.073 0.927 9 C 0.255 3.745 10 H 0.078 0.922 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.584 6.584 14 N -0.753 5.753 15 C 0.143 3.857 16 C 0.051 3.949 17 N -0.548 5.548 18 C 0.047 3.953 19 C -0.073 4.073 20 S -0.278 6.278 21 C -0.075 4.075 22 C 0.057 3.943 23 C 0.413 3.587 24 F -0.176 7.176 25 F -0.205 7.205 26 F -0.199 7.199 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.393 0.607 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.528 -19.093 -1.260 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.162 4.162 3 Si 0.885 3.115 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.685 4.685 8 H 0.091 0.909 9 C 0.148 3.852 10 H 0.096 0.904 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.461 6.461 14 N -0.410 5.410 15 C 0.018 3.982 16 C -0.077 4.077 17 N -0.274 5.274 18 C -0.082 4.082 19 C -0.222 4.222 20 S -0.052 6.052 21 C -0.223 4.223 22 C -0.072 4.072 23 C 0.357 3.643 24 F -0.158 7.158 25 F -0.187 7.187 26 F -0.180 7.180 27 H 0.089 0.911 28 H 0.230 0.770 29 H 0.226 0.774 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.805 -18.675 -0.913 19.897 hybrid contribution 1.662 -0.414 0.256 1.732 sum 8.467 -19.089 -0.658 20.893 Atomic orbital electron populations 1.70747 1.07642 1.31827 1.37169 1.25922 0.95662 1.02838 0.91750 0.83708 0.75526 0.75104 0.77113 1.20355 1.20669 1.20969 1.21564 1.06242 0.93373 1.47356 0.90894 1.19536 0.95064 0.85423 0.85214 0.90412 1.45082 1.12180 1.04290 1.75689 1.16040 0.85335 0.80675 0.78089 1.90926 1.13683 1.84893 1.56570 1.44941 1.11067 1.05549 1.79450 1.21049 0.95322 0.79442 1.02425 1.22197 0.95998 0.87421 1.02069 1.60977 1.37077 1.01997 1.27312 1.22379 0.97914 0.98255 0.89640 1.23519 0.99810 0.94137 1.04693 1.86964 1.61118 1.21525 1.35622 1.23495 1.02305 0.98890 0.97646 1.22214 0.92889 0.91635 1.00478 1.23078 0.72659 0.73003 0.95544 1.93151 1.76015 1.51152 1.95472 1.93100 1.82507 1.54305 1.88766 1.93009 1.42481 1.95646 1.86909 0.91083 0.76960 0.77432 0.91747 0.90807 0.89700 0.93838 0.93125 0.88626 0.88706 0.87303 0.88847 0.87444 0.89443 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 12.35 55.43 0.68 -23.01 16 2 C 0.05 1.38 4.23 -17.82 -0.08 1.30 16 3 Si 1.06 23.23 29.99 -169.99 -5.10 18.14 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.65 -16.51 8.32 -34.44 -0.29 -16.80 16 8 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 9 C 0.25 6.21 2.00 -69.08 -0.14 6.07 16 10 H 0.08 2.12 6.46 -51.93 -0.34 1.78 16 11 N -0.72 -14.39 4.94 -59.81 -0.30 -14.68 16 12 C 0.70 13.54 8.17 -86.93 -0.71 12.83 16 13 O -0.58 -13.73 14.91 5.29 0.08 -13.65 16 14 N -0.75 -10.24 5.56 -65.23 -0.36 -10.60 16 15 C 0.14 1.69 5.60 -4.04 -0.02 1.67 16 16 C 0.05 0.42 5.08 -3.82 -0.02 0.40 16 17 N -0.55 -4.55 4.41 -235.04 -1.04 -5.59 16 18 C 0.05 0.39 5.29 -3.93 -0.02 0.37 16 19 C -0.07 -0.59 6.69 37.29 0.25 -0.34 16 20 S -0.28 -2.48 22.40 -107.50 -2.41 -4.89 16 21 C -0.07 -0.52 6.69 37.28 0.25 -0.27 16 22 C 0.06 0.39 5.42 -3.93 -0.02 0.37 16 23 C 0.41 10.27 2.82 37.16 0.10 10.38 16 24 F -0.18 -4.70 14.71 2.25 0.03 -4.66 16 25 F -0.21 -5.08 15.77 2.25 0.04 -5.05 16 26 F -0.20 -4.70 16.97 2.25 0.04 -4.66 16 27 H 0.28 7.92 7.25 -40.82 -0.30 7.62 16 28 H 0.40 6.76 8.54 -40.82 -0.35 6.42 16 29 H 0.39 4.07 8.49 -40.82 -0.35 3.73 16 30 H 0.06 0.83 6.18 -51.93 -0.32 0.51 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.62 7.84 -51.93 -0.41 0.22 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.42 7.92 -51.93 -0.41 0.01 16 35 H 0.10 0.85 5.77 -51.93 -0.30 0.55 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.49 7.76 -51.93 -0.40 0.09 16 41 H 0.05 0.35 7.91 -51.93 -0.41 -0.06 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -31.28 354.46 -9.00 -40.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.32 Total: 7.06 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -0.69 Total: 15.98 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -1.01 Total: -53.89 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 9 Polarization: -14.48 SS G_CDS: 0.11 Total: -14.37 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.10 Total: 18.14 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.41 Total: -4.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.28 -9.00 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932921209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.993 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds