Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 120.00301 * 2 1 4 4 H 1.48499 * 109.47016 * 269.99898 * 3 2 1 5 5 H 1.48502 * 109.46897 * 30.00044 * 3 2 1 6 6 H 1.48501 * 109.46791 * 149.99806 * 3 2 1 7 7 C 1.38805 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00001 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99713 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99689 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46862 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99787 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99960 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00152 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.32222 * 35.35351 * 14 13 11 16 16 C 1.53023 * 109.32733 * 155.00320 * 14 13 11 17 17 C 1.53968 * 108.83234 * 175.67733 * 16 14 13 18 18 H 1.09004 * 113.67258 * 168.55962 * 17 16 14 19 19 C 1.55427 * 106.41171 * 293.82278 * 17 16 14 20 20 C 1.55171 * 100.35450 * 73.37418 * 19 17 16 21 21 H 1.09002 * 112.48437 * 162.66451 * 20 19 17 22 22 C 1.53887 * 106.65024 * 286.29099 * 20 19 17 23 23 N 1.47792 * 104.25329 * 40.54796 * 20 19 17 24 24 C 1.34781 * 125.85296 * 153.52273 * 23 20 19 25 25 O 1.21344 * 119.99939 * 0.02562 * 24 23 20 26 26 C 1.49454 * 119.99740 * 179.97438 * 24 23 20 27 27 N 1.34773 * 119.99739 * 179.97438 * 26 24 23 28 28 O 1.21350 * 119.99971 * 359.97438 * 26 24 23 29 29 C 1.47086 * 108.28874 * 333.54161 * 23 20 19 30 30 H 0.97004 * 119.99401 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47297 * 60.00664 * 10 9 7 32 32 H 1.08993 * 109.47269 * 299.99593 * 10 9 7 33 33 H 0.97001 * 119.99628 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.57847 * 55.86726 * 16 14 13 35 35 H 1.08999 * 109.57626 * 295.47778 * 16 14 13 36 36 H 1.09004 * 111.23704 * 315.59475 * 19 17 16 37 37 H 1.08998 * 111.27451 * 191.16403 * 19 17 16 38 38 H 1.08995 * 109.53466 * 185.43434 * 22 20 19 39 39 H 1.08999 * 109.53360 * 305.66374 * 22 20 19 40 40 H 0.97001 * 119.99959 * 0.02562 * 27 26 24 41 41 H 0.97001 * 119.99591 * 179.97438 * 27 26 24 42 42 H 1.09006 * 109.97397 * 241.73632 * 29 23 20 43 43 H 1.09000 * 110.00537 * 120.47486 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0864 -2.9847 0.0001 11 6 5.5730 -3.2328 -0.0010 12 8 6.3439 -2.2966 -0.0015 13 7 6.0455 -4.4950 -0.0005 14 6 7.4905 -4.7361 -0.0011 15 1 7.9847 -3.9677 0.5934 16 6 7.7749 -6.1100 0.6098 17 6 9.2838 -6.3980 0.5046 18 1 9.6062 -7.2612 1.0870 19 6 9.6012 -6.5293 -1.0112 20 6 9.5076 -5.0426 -1.4456 21 1 9.9849 -4.8587 -2.4081 22 6 8.0123 -4.6791 -1.4543 23 7 10.1546 -4.3001 -0.3436 24 6 10.7603 -3.1007 -0.4486 25 8 10.8061 -2.5360 -1.5218 26 6 11.3744 -2.4655 0.7568 27 7 11.9804 -1.2664 0.6517 28 8 11.3272 -3.0296 1.8302 29 6 10.0246 -5.0949 0.8872 30 1 -0.4849 0.8401 0.0004 31 1 3.6432 -3.4319 -0.8896 32 1 3.6439 -3.4315 0.8904 33 1 5.4288 -5.2437 0.0002 34 1 7.2185 -6.8737 0.0663 35 1 7.4747 -6.1131 1.6576 36 1 8.8530 -7.1372 -1.5201 37 1 10.6038 -6.9253 -1.1725 38 1 7.8848 -3.6702 -1.8465 39 1 7.4690 -5.3863 -2.0810 40 1 12.0177 -0.8154 -0.2063 41 1 12.3787 -0.8540 1.4342 42 1 9.4472 -4.5419 1.6282 43 1 11.0117 -5.3306 1.2849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047340782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -97.566642 kcal Electronic energy + Delta-G solvation = -27990.864223 eV Core-core repulsion = 23969.331928 eV Total energy + Delta-G solvation = -4021.532295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68926 -40.03666 -38.93963 -38.12170 -35.05607 -34.00407 -32.76824 -32.43641 -31.55223 -30.39458 -28.23606 -26.49810 -25.60835 -25.18946 -22.65174 -21.98998 -20.50535 -20.20739 -19.60795 -18.42660 -17.84861 -17.21237 -17.06117 -16.67901 -16.22136 -15.79360 -15.25116 -15.10113 -14.95861 -14.77398 -14.59839 -14.14033 -13.78277 -13.64494 -13.43677 -13.28277 -12.93743 -12.90948 -12.79890 -12.59749 -12.32016 -12.10133 -11.88396 -11.53592 -11.27994 -11.22108 -11.00652 -10.76958 -10.64426 -10.51634 -10.15497 -9.85274 -9.82995 -9.49838 -9.10563 -9.00274 -8.89992 -8.49467 -6.91420 -6.28985 -4.00470 1.21205 2.11548 2.75911 2.97194 3.00216 3.28264 3.33861 3.38590 3.51020 3.64106 3.97467 4.09325 4.32146 4.33306 4.38412 4.62763 4.74275 4.76739 4.81355 4.90014 5.03336 5.10248 5.12842 5.24935 5.34242 5.40602 5.41520 5.49111 5.61794 5.71102 5.74633 5.76672 5.83453 6.00486 6.03908 6.06361 6.23386 6.56435 6.68050 7.01132 7.46581 7.61844 7.77559 7.94223 8.41480 8.50640 9.17411 10.80306 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.002987 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.874421 B = 9373.012094 C =10611.126065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.517 6.517 13 N -0.734 5.734 14 C 0.145 3.855 15 H 0.091 0.909 16 C -0.125 4.125 17 C -0.099 4.099 18 H 0.111 0.889 19 C -0.129 4.129 20 C 0.136 3.864 21 H 0.105 0.895 22 C -0.142 4.142 23 N -0.584 5.584 24 C 0.522 3.478 25 O -0.517 6.517 26 C 0.517 3.483 27 N -0.822 5.822 28 O -0.519 6.519 29 C 0.106 3.894 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.083 0.917 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.922 -15.906 0.036 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.391 6.391 13 N -0.387 5.387 14 C 0.040 3.960 15 H 0.109 0.891 16 C -0.163 4.163 17 C -0.118 4.118 18 H 0.129 0.871 19 C -0.167 4.167 20 C 0.033 3.967 21 H 0.123 0.877 22 C -0.182 4.182 23 N -0.319 5.319 24 C 0.305 3.695 25 O -0.393 6.393 26 C 0.296 3.704 27 N -0.388 5.388 28 O -0.394 6.394 29 C -0.017 4.017 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.233 0.767 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.245 0.755 41 H 0.244 0.756 42 H 0.102 0.898 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.960 -14.328 0.077 28.780 hybrid contribution -1.040 -0.152 -0.092 1.055 sum 23.920 -14.480 -0.015 27.961 Atomic orbital electron populations 1.69941 1.05915 1.27759 1.48122 1.24709 0.94443 0.98950 0.93169 0.86739 0.81894 0.83296 0.79956 1.19189 1.19916 1.15957 1.22323 0.88299 0.97528 1.58747 0.89396 1.84815 1.09229 1.00085 1.97418 1.23282 0.94044 1.04378 1.05744 1.20310 0.90564 0.82417 0.75100 1.90708 1.58734 1.42185 1.47459 1.46032 1.07073 1.08025 1.77570 1.21288 0.81302 0.97471 0.95988 0.89128 1.22108 0.95653 0.96458 1.02032 1.22689 0.94856 0.97445 0.96830 0.87140 1.23118 1.02951 0.95037 0.95600 1.22365 0.92737 0.90447 0.91152 0.87683 1.22792 0.94220 1.03673 0.97470 1.48369 1.53824 1.17958 1.11763 1.19701 0.79718 0.81088 0.88988 1.90782 1.58278 1.61510 1.28725 1.20018 0.79025 0.82471 0.88902 1.43494 1.58385 1.20598 1.16316 1.90797 1.57313 1.62650 1.28627 1.22401 1.01596 0.91218 0.86461 0.91941 0.88546 0.88500 0.76750 0.90545 0.90507 0.88989 0.90348 0.90465 0.90129 0.75526 0.75648 0.89845 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.03 27.74 -169.99 -4.72 17.32 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 7 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.47 7.80 -10.98 -0.09 9.39 16 12 O -0.52 -11.39 15.53 5.56 0.09 -11.30 16 13 N -0.73 -9.13 5.07 -53.02 -0.27 -9.40 16 14 C 0.14 1.60 2.10 -67.13 -0.14 1.46 16 15 H 0.09 1.30 5.39 -51.93 -0.28 1.02 16 16 C -0.12 -0.87 4.95 -26.21 -0.13 -1.00 16 17 C -0.10 -0.59 4.33 -87.93 -0.38 -0.97 16 18 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 19 C -0.13 -0.74 6.18 -24.29 -0.15 -0.89 16 20 C 0.14 1.24 3.94 -65.61 -0.26 0.99 16 21 H 0.11 0.98 8.02 -51.93 -0.42 0.57 16 22 C -0.14 -1.53 5.40 -25.48 -0.14 -1.67 16 23 N -0.58 -6.31 2.37 -162.30 -0.38 -6.70 16 24 C 0.52 6.68 7.92 -11.58 -0.09 6.59 16 25 O -0.52 -7.68 16.74 5.50 0.09 -7.59 16 26 C 0.52 6.05 8.13 -11.58 -0.09 5.95 16 27 N -0.82 -6.79 8.87 30.91 0.27 -6.52 16 28 O -0.52 -6.88 15.00 5.50 0.08 -6.80 16 29 C 0.11 0.94 4.22 -2.82 -0.01 0.93 16 30 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 32 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 33 H 0.40 3.70 8.60 -40.82 -0.35 3.35 16 34 H 0.08 0.41 7.97 -51.93 -0.41 -0.01 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.40 7.73 -51.93 -0.40 0.00 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 0.71 7.99 -51.93 -0.42 0.30 16 40 H 0.41 2.99 8.30 -40.82 -0.34 2.65 16 41 H 0.41 2.48 8.93 -40.82 -0.36 2.12 16 42 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 43 H 0.08 0.68 7.60 -51.93 -0.39 0.29 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -37.79 363.52 -7.44 -45.23 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.82 Total: 5.37 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.04 Total: 6.51 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.40 Total: -48.58 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.26 Total: -25.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.32 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.79 -7.44 -45.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047340782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.341 kcal (2) G-P(sol) polarization free energy of solvation -37.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds